Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100293809 Sequence: fasta or formatted (79aa) NCBI GI: 239757603
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4          9           1
 C cysteine            0.0          0           0
 D aspartate           1.3          1           1
 E glutamate           3.8          3           1
 F phenylalanine       3.8          3           1
 G glycine            13.9         11           1
 H histidine           0.0          0           0
 I isoleucine          2.5          2           1
 K lysine              5.1          4           1
 L leucine             1.3          1           1
 M methionine          1.3          1           1
 N asparagine          1.3          1           1
 P proline            11.4          9           1
 Q glutamine           3.8          3           1
 R arginine           24.1         19           4
 S serine              7.6          6           1
 T threonine           3.8          3           1
 V valine              2.5          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100294366          1.000   PREDICTED: hypothetical protein 
LOC100288573          0.599   PREDICTED: hypothetical protein XP_002343799 
DEDD2                 0.080   death effector domain-containing  DNA binding protei...
LOC100291634          0.073   PREDICTED: hypothetical protein XP_002346062 
LOC100291096          0.073   PREDICTED: hypothetical protein XP_002346952 
LOC100287232          0.073   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.073   PREDICTED: hypothetical protein 
C19orf29              0.066   chromosome 19 open reading frame 29 
C19orf29              0.066   chromosome 19 open reading frame 29 
NPHS2                 0.058   podocin 
LOC100292916          0.058   PREDICTED: hypothetical protein 
LOC100290781          0.058   PREDICTED: hypothetical protein XP_002347101 
LOC100286938          0.058   PREDICTED: hypothetical protein XP_002342984 
LOC728896             0.058   PREDICTED: hypothetical protein 
LOC100287002          0.058   PREDICTED: hypothetical protein XP_002343745 
LOC100293776          0.051   PREDICTED: hypothetical protein 
LOC100288658          0.051   PREDICTED: hypothetical protein XP_002342750 
LOC100288658          0.051   PREDICTED: hypothetical protein 
SMAD6                 0.051   SMAD family member 6 isoform 1 
BAG1                  0.051   BCL2-associated athanogene isoform 1L 
BHLHA15               0.051   basic helix-loop-helix family, member a15 
FAM38A                0.051   family with sequence similarity 38, member A 
KIAA0368              0.044   KIAA0368 protein 
RRS1                  0.044   homolog of yeast ribosome biogenesis regulatory prot...
LOC100292122          0.044   PREDICTED: hypothetical protein XP_002345138 
LOC100286986          0.044   PREDICTED: hypothetical protein XP_002344191 
LOC100286967          0.044   PREDICTED: hypothetical protein XP_002342247 
ZNF318                0.044   zinc finger protein 318 
LOC728392             0.036   hypothetical protein LOC728392 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press