Guide to the Human Genome
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Name: LOC728896 Sequence: fasta or formatted (160aa) NCBI GI: 239756862
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.5         20           2
 C cysteine            1.2          2           1
 D aspartate           4.4          7           1
 E glutamate           6.2         10           2
 F phenylalanine       0.6          1           1
 G glycine            17.5         28           2
 H histidine           1.9          3           1
 I isoleucine          1.9          3           1
 K lysine              1.2          2           1
 L leucine             5.6          9           1
 M methionine          1.9          3           1
 N asparagine          0.6          1           1
 P proline             7.5         12           1
 Q glutamine           0.6          1           1
 R arginine           16.2         26           2
 S serine              8.1         13           2
 T threonine           2.5          4           2
 V valine              6.9         11           1
 W tryptophan          2.5          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130897          0.036   PREDICTED: hypothetical protein 
LOC100130897          0.036   PREDICTED: hypothetical protein 
COL4A3                0.036   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.036   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.036   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.036   alpha 3 type IV collagen isoform 1 precursor 
LOC100293249          0.033   PREDICTED: similar to hCG2040393 
LOC100291245          0.033   PREDICTED: hypothetical protein XP_002347031 
LOC100287846          0.033   PREDICTED: hypothetical protein XP_002342883 
MYO1F                 0.030   myosin IF 
COL27A1               0.026   collagen, type XXVII, alpha 1 
LOC100293809          0.026   PREDICTED: hypothetical protein 
LOC100294366          0.026   PREDICTED: hypothetical protein 
LOC100288658          0.023   PREDICTED: hypothetical protein XP_002342750 
LOC100288658          0.023   PREDICTED: hypothetical protein 
LOC100290893          0.023   PREDICTED: hypothetical protein XP_002347938 
LOC728767             0.023   PREDICTED: hypothetical protein 
LOC100288361          0.023   PREDICTED: hypothetical protein XP_002344205 
LOC728767             0.023   PREDICTED: hypothetical protein 
TUSC1                 0.023   tumor suppressor candidate 1 
SNTB2                 0.023   basic beta 2 syntrophin 
LOC100290372          0.020   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.020   PREDICTED: hypothetical protein XP_002342652 
LOC100293776          0.016   PREDICTED: hypothetical protein 
LOC100293919          0.016   PREDICTED: hypothetical protein 
NPHS2                 0.016   podocin 
CLK3                  0.016   CDC-like kinase 3 isoform a 
MBD2                  0.013   methyl-CpG binding domain protein 2 testis-specific i...
MBD2                  0.013   methyl-CpG binding domain protein 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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