Guide to the Human Genome
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Name: LOC728392 Sequence: fasta or formatted (119aa) NCBI GI: 240849329
Description:

hypothetical protein LOC728392

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.3         17           2
 C cysteine            1.7          2           1
 D aspartate           5.0          6           1
 E glutamate           5.0          6           1
 F phenylalanine       5.0          6           1
 G glycine            10.1         12           2
 H histidine           2.5          3           1
 I isoleucine          5.9          7           1
 K lysine              5.0          6           2
 L leucine             6.7          8           1
 M methionine          0.8          1           1
 N asparagine          0.0          0           0
 P proline            14.3         17           3
 Q glutamine           3.4          4           1
 R arginine            9.2         11           3
 S serine              5.9          7           1
 T threonine           1.7          2           1
 V valine              0.0          0           0
 W tryptophan          0.8          1           1
 Y tyrosine            2.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC728392 
LOC100293212          0.070   PREDICTED: hypothetical protein 
LOC100289796          0.070   PREDICTED: hypothetical protein XP_002346485 
LOC100288812          0.070   PREDICTED: hypothetical protein XP_002342329 
FOXD1                 0.066   forkhead box D1 
SCHIP1                0.062   schwannomin interacting protein 1 
AEBP1                 0.053   adipocyte enhancer binding protein 1 precursor [Homo...
LOC100286959          0.053   PREDICTED: hypothetical protein XP_002343921 
ERF                   0.053   Ets2 repressor factor 
PRB4                  0.048   proline-rich protein BstNI subfamily 4 precursor [Ho...
UBN2                  0.048   ubinuclein 2 
LOC100290274          0.048   PREDICTED: hypothetical protein XP_002346984 
LOC100128074          0.048   PREDICTED: hypothetical protein 
LOC100288645          0.048   PREDICTED: hypothetical protein XP_002342846 
ARTN                  0.048   neurotrophic factor artemin isoform 2 
ARTN                  0.048   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.048   neurotrophic factor artemin isoform 3 precursor [Ho...
ARTN                  0.048   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.048   neurotrophic factor artemin isoform 3 precursor [Ho...
COL16A1               0.048   alpha 1 type XVI collagen precursor 
FLJ36031              0.048   hypothetical protein LOC168455 
PRB1                  0.048   proline-rich protein BstNI subfamily 1 isoform 3 pre...
ATXN2                 0.044   ataxin 2 
MEN1                  0.044   menin isoform 1 
MEN1                  0.044   menin isoform 1 
MEN1                  0.044   menin isoform 1 
MEN1                  0.044   menin isoform 1 
MEN1                  0.044   menin isoform 1 
MEN1                  0.044   menin isoform 1 
MEN1                  0.044   menin isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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