Guide to the Human Genome
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Name: BHLHA15 Sequence: fasta or formatted (189aa) NCBI GI: 29126247
Description:

basic helix-loop-helix family, member a15

Referenced in:

Helix-Loop-Helix Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         17           3
 C cysteine            0.0          0           0
 D aspartate           2.1          4           1
 E glutamate           6.3         12           1
 F phenylalanine       1.1          2           1
 G glycine            10.1         19           2
 H histidine           2.6          5           1
 I isoleucine          3.2          6           1
 K lysine              5.3         10           2
 L leucine             7.9         15           1
 M methionine          1.6          3           1
 N asparagine          3.2          6           2
 P proline            10.1         19           2
 Q glutamine           7.4         14           5
 R arginine           12.7         24           4
 S serine              6.9         13           3
 T threonine           6.3         12           1
 V valine              2.1          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   basic helix-loop-helix family, member a15 
NEUROG3               0.143   neurogenin 3 
ATOH1                 0.137   atonal homolog 1 
BHLHE23               0.137   basic helix-loop-helix domain containing, class B, 4...
SCXB                  0.137   scleraxis homolog B 
SCXA                  0.137   scleraxis homolog A 
ATOH7                 0.132   atonal homolog 7 
NEUROG2               0.129   neurogenin 2 
TCF15                 0.126   basic helix-loop-helix transcription factor 15 [Homo...
ASCL2                 0.118   achaete-scute complex homolog-like 2 
NEUROG1               0.118   neurogenin 1 
PTF1A                 0.118   pancreas specific transcription factor, 1a 
NEUROD2               0.115   neurogenic differentiation 2 
LOC100129654          0.112   PREDICTED: similar to transcription factor 23 [Homo...
LOC100129654          0.112   PREDICTED: similar to transcription factor 23 [Homo...
OLIG1                 0.112   oligodendrocyte transcription factor 1 
HAND1                 0.112   basic helix-loop-helix transcription factor HAND1 [Ho...
TWIST1                0.112   twist 
HAND2                 0.109   basic helix-loop-helix transcription factor HAND2 [H...
BHLHE22               0.104   basic helix-loop-helix domain containing, class B, 5...
NEUROD6               0.104   neurogenic differentiation 6 
NEUROD1               0.104   neurogenic differentiation 1 
ATOH8                 0.098   atonal homolog 8 
OLIG3                 0.098   oligodendrocyte transcription factor 3 
NEUROD4               0.098   neurogenic differentiation 4 
LOC100129654          0.098   PREDICTED: similar to transcription factor 23 [Homo...
OLIG2                 0.095   oligodendrocyte lineage transcription factor 2 [Homo...
LYL1                  0.090   lymphoblastic leukemia derived sequence 1 
MSC                   0.087   musculin 
TWIST2                0.087   twist homolog 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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