Search of human proteins with 239752001

Search of human proteins with 239752001

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239752001 PREDICTED: hypothetical protein XP_002348063 [Homo
sapiens]
         (271 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757486 PREDICTED: hypothetical protein [Homo sapiens]           553   e-158
gi|239752001 PREDICTED: hypothetical protein XP_002348063 [Homo ...   553   e-158
gi|239746486 PREDICTED: hypothetical protein XP_002343772 [Homo ...   547   e-156
gi|237757326 synaptojanin 1 isoform d [Homo sapiens]                   37   0.014
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ...    37   0.024
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ...    37   0.024
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    36   0.041
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    36   0.041
gi|13994236 cat eye syndrome chromosome region, candidate 6 isof...    34   0.12 
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap...    34   0.12 
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap...    34   0.12 
gi|214010175 CLIP-associating protein 1 isoform 3 [Homo sapiens]       34   0.15 
gi|214010173 CLIP-associating protein 1 isoform 2 [Homo sapiens]       34   0.15 
gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]    34   0.15 
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]            33   0.20 
gi|4506607 ribosomal protein L18 [Homo sapiens]                        33   0.26 
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        33   0.26 
gi|222418604 hypothetical protein LOC257407 [Homo sapiens]             32   0.45 
gi|31563537 CLIP-associating protein 1 isoform 1 [Homo sapiens]        32   0.59 
gi|158303333 synaptopodin isoform B [Homo sapiens]                     32   0.77 
gi|40353727 synaptopodin isoform A [Homo sapiens]                      32   0.77 
gi|5730073 KH domain containing, RNA binding, signal transductio...    32   0.77 
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]                32   0.77 
gi|238908524 hypothetical protein LOC389333 [Homo sapiens]             31   1.0  
gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]            31   1.0  
gi|169167715 PREDICTED: hypothetical protein [Homo sapiens]            31   1.0  
gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapi...    31   1.0  
gi|239756804 PREDICTED: hypothetical protein [Homo sapiens]            31   1.3  
gi|239756268 PREDICTED: hypothetical protein XP_002344877 [Homo ...    31   1.3  
gi|239754668 PREDICTED: mucin 12 [Homo sapiens]                        31   1.3  

>gi|239757486 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 271

 Score =  553 bits (1426), Expect = e-158
 Identities = 271/271 (100%), Positives = 271/271 (100%)

Query: 1   MVHLLPGRVEIPLMGLSAPISLLCQNQEALDELSRHHLVKPVLERTRRVLAQKPPGGNSQ 60
           MVHLLPGRVEIPLMGLSAPISLLCQNQEALDELSRHHLVKPVLERTRRVLAQKPPGGNSQ
Sbjct: 1   MVHLLPGRVEIPLMGLSAPISLLCQNQEALDELSRHHLVKPVLERTRRVLAQKPPGGNSQ 60

Query: 61  VALEASNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGPLSTAAAKGATHLP 120
           VALEASNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGPLSTAAAKGATHLP
Sbjct: 61  VALEASNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGPLSTAAAKGATHLP 120

Query: 121 VSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHAPCCGLTRRPGV 180
           VSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHAPCCGLTRRPGV
Sbjct: 121 VSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHAPCCGLTRRPGV 180

Query: 181 EWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPHDKEATLVSRRRKYRRERE 240
           EWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPHDKEATLVSRRRKYRRERE
Sbjct: 181 EWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPHDKEATLVSRRRKYRRERE 240

Query: 241 LRPRAVGTDASSPAASPGGAEAQRQTLEDLG 271
           LRPRAVGTDASSPAASPGGAEAQRQTLEDLG
Sbjct: 241 LRPRAVGTDASSPAASPGGAEAQRQTLEDLG 271


>gi|239752001 PREDICTED: hypothetical protein XP_002348063 [Homo
           sapiens]
          Length = 271

 Score =  553 bits (1426), Expect = e-158
 Identities = 271/271 (100%), Positives = 271/271 (100%)

Query: 1   MVHLLPGRVEIPLMGLSAPISLLCQNQEALDELSRHHLVKPVLERTRRVLAQKPPGGNSQ 60
           MVHLLPGRVEIPLMGLSAPISLLCQNQEALDELSRHHLVKPVLERTRRVLAQKPPGGNSQ
Sbjct: 1   MVHLLPGRVEIPLMGLSAPISLLCQNQEALDELSRHHLVKPVLERTRRVLAQKPPGGNSQ 60

Query: 61  VALEASNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGPLSTAAAKGATHLP 120
           VALEASNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGPLSTAAAKGATHLP
Sbjct: 61  VALEASNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGPLSTAAAKGATHLP 120

Query: 121 VSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHAPCCGLTRRPGV 180
           VSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHAPCCGLTRRPGV
Sbjct: 121 VSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHAPCCGLTRRPGV 180

Query: 181 EWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPHDKEATLVSRRRKYRRERE 240
           EWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPHDKEATLVSRRRKYRRERE
Sbjct: 181 EWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPHDKEATLVSRRRKYRRERE 240

Query: 241 LRPRAVGTDASSPAASPGGAEAQRQTLEDLG 271
           LRPRAVGTDASSPAASPGGAEAQRQTLEDLG
Sbjct: 241 LRPRAVGTDASSPAASPGGAEAQRQTLEDLG 271


>gi|239746486 PREDICTED: hypothetical protein XP_002343772 [Homo
           sapiens]
          Length = 271

 Score =  547 bits (1410), Expect = e-156
 Identities = 269/271 (99%), Positives = 269/271 (99%)

Query: 1   MVHLLPGRVEIPLMGLSAPISLLCQNQEALDELSRHHLVKPVLERTRRVLAQKPPGGNSQ 60
           MVHLLPGRVEIPLMGLSAPISLLCQNQEALDELSRHHLVKPVLERTRRVLAQKPPGGNSQ
Sbjct: 1   MVHLLPGRVEIPLMGLSAPISLLCQNQEALDELSRHHLVKPVLERTRRVLAQKPPGGNSQ 60

Query: 61  VALEASNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGPLSTAAAKGATHLP 120
           VALEASNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARG LSTAAAKGATH P
Sbjct: 61  VALEASNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGRLSTAAAKGATHPP 120

Query: 121 VSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHAPCCGLTRRPGV 180
           VSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHAPCCGLTRRPGV
Sbjct: 121 VSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHAPCCGLTRRPGV 180

Query: 181 EWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPHDKEATLVSRRRKYRRERE 240
           EWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPHDKEATLVSRRRKYRRERE
Sbjct: 181 EWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPHDKEATLVSRRRKYRRERE 240

Query: 241 LRPRAVGTDASSPAASPGGAEAQRQTLEDLG 271
           LRPRAVGTDASSPAASPGGAEAQRQTLEDLG
Sbjct: 241 LRPRAVGTDASSPAASPGGAEAQRQTLEDLG 271


>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
          Length = 1526

 Score = 37.4 bits (85), Expect = 0.014
 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 40   KPVLERTRRVLAQKPP--GGNSQVALEASNARSRGRAAKVAEPCFPPSRG--TKPPRRVA 95
            +PV   TR    Q+PP   G SQ + +A  A         A P  PP  G  + P     
Sbjct: 1107 RPVAPPTRPAPPQRPPPPSGRSQPSPQAGLAGPGPAGYSTARPTIPPRAGVISAPQSHAR 1166

Query: 96   ARTGGLTTARGPLSTAAAKGATHLP 120
            A  G LT      ++  +KG+T LP
Sbjct: 1167 ASAGRLTPESQSKTSETSKGSTFLP 1191


>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
           sapiens]
          Length = 647

 Score = 36.6 bits (83), Expect = 0.024
 Identities = 57/214 (26%), Positives = 73/214 (34%), Gaps = 26/214 (12%)

Query: 69  RSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGPLSTAAAKGATHLPVSFPRTRE 128
           R+   A ++A     P RG       AA  G       PLS    K +   P + PR   
Sbjct: 214 RAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAAPLSGVVQKASYLRPKNLPRLLS 273

Query: 129 SWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHAPCCGLTR----RPGVEWRR 184
              A +      L +  G +      G + +  G  G   A   GL R    +P   W  
Sbjct: 274 MPSAAARPCGAALPRS-GFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWAL 332

Query: 185 RPDRQRGKNQDVCRFR-EMGCGGVRWRRTARDGEGLRPHDKEATLV----SRRRKYRR-- 237
              R R       RF  + GC     +R  RDG G   H  E   V     RR++ RR  
Sbjct: 333 AA-RPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAG--NHASEPARVWSPPPRRQRPRRLP 389

Query: 238 ----ERE-------LRPRAVGTDASSPAASPGGA 260
               + E        RP   G     PAA PGGA
Sbjct: 390 RASLQEEPKRRPPCARPSGAGPAREGPAAWPGGA 423


>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
           sapiens]
          Length = 647

 Score = 36.6 bits (83), Expect = 0.024
 Identities = 57/214 (26%), Positives = 73/214 (34%), Gaps = 26/214 (12%)

Query: 69  RSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGPLSTAAAKGATHLPVSFPRTRE 128
           R+   A ++A     P RG       AA  G       PLS    K +   P + PR   
Sbjct: 214 RAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAAPLSGVVQKASYLRPKNLPRLLS 273

Query: 129 SWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHAPCCGLTR----RPGVEWRR 184
              A +      L +  G +      G + +  G  G   A   GL R    +P   W  
Sbjct: 274 MPSAAARPCGAALPRS-GFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWAL 332

Query: 185 RPDRQRGKNQDVCRFR-EMGCGGVRWRRTARDGEGLRPHDKEATLV----SRRRKYRR-- 237
              R R       RF  + GC     +R  RDG G   H  E   V     RR++ RR  
Sbjct: 333 AA-RPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAG--NHASEPARVWSPPPRRQRPRRLP 389

Query: 238 ----ERE-------LRPRAVGTDASSPAASPGGA 260
               + E        RP   G     PAA PGGA
Sbjct: 390 RASLQEEPKRRPPCARPSGAGPAREGPAAWPGGA 423


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
            sapiens]
          Length = 1487

 Score = 35.8 bits (81), Expect = 0.041
 Identities = 56/224 (25%), Positives = 75/224 (33%), Gaps = 48/224 (21%)

Query: 51   AQKPPGGNSQVALEASNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTG--GLTTARGPL 108
            A  PPG +    ++      RG    V  P  P   G+  P     + G  G   A+GP+
Sbjct: 1042 ADGPPGRDGAAGVKGD----RGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPM 1097

Query: 109  STAAAKGATHLP-VSFPRTRESWGAHSGKEDETLHQG-QGLTSLAAFPGAS--------- 157
              +   GA  +     PR  +      G+     H+G  GL  L   PG S         
Sbjct: 1098 GPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPA 1157

Query: 158  -----------VSPDGESGADHAPC-------------CGLTRRPGVEWRRRPDRQRGKN 193
                       V P G+ GA+  P               G    PG      P    G  
Sbjct: 1158 GPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPG 1217

Query: 194  QDVCRF-----REMGCGGVRWRRTARDGEGLRPHDKE--ATLVS 230
             D+  F     RE G   +++ R  +   GLR HD E  ATL S
Sbjct: 1218 IDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDAEVDATLKS 1261


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
            sapiens]
          Length = 1418

 Score = 35.8 bits (81), Expect = 0.041
 Identities = 56/224 (25%), Positives = 75/224 (33%), Gaps = 48/224 (21%)

Query: 51   AQKPPGGNSQVALEASNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTG--GLTTARGPL 108
            A  PPG +    ++      RG    V  P  P   G+  P     + G  G   A+GP+
Sbjct: 973  ADGPPGRDGAAGVKGD----RGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPM 1028

Query: 109  STAAAKGATHLP-VSFPRTRESWGAHSGKEDETLHQG-QGLTSLAAFPGAS--------- 157
              +   GA  +     PR  +      G+     H+G  GL  L   PG S         
Sbjct: 1029 GPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPA 1088

Query: 158  -----------VSPDGESGADHAPC-------------CGLTRRPGVEWRRRPDRQRGKN 193
                       V P G+ GA+  P               G    PG      P    G  
Sbjct: 1089 GPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPG 1148

Query: 194  QDVCRF-----REMGCGGVRWRRTARDGEGLRPHDKE--ATLVS 230
             D+  F     RE G   +++ R  +   GLR HD E  ATL S
Sbjct: 1149 IDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDAEVDATLKS 1192


>gi|13994236 cat eye syndrome chromosome region, candidate 6 isoform
           a [Homo sapiens]
          Length = 578

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 38/134 (28%), Positives = 48/134 (35%), Gaps = 13/134 (9%)

Query: 56  GGNSQVALEASNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGPLSTAAAKG 115
           GG S  +   +       +  V++P  P +    PP +V A  G    A    S+AA   
Sbjct: 64  GGGSPSSSTGAEREDDDESLSVSKPLVPNAALLGPPAQVGAPAGPAPVAFS--SSAATSS 121

Query: 116 ATHLPVSF-PRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHAPCC-- 172
           +T  P S    T   +G   G        G G  S     G        SGA   PCC  
Sbjct: 122 STSTPTSSCSMTAADFG---GGAAAGAVGGPGSRSAGGAGGTGTG----SGASCCPCCCC 174

Query: 173 -GLTRRPGVEWRRR 185
            G   RPG   RRR
Sbjct: 175 CGCPDRPGRRGRRR 188


>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
          Length = 2462

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 39/146 (26%), Positives = 55/146 (37%), Gaps = 10/146 (6%)

Query: 38   LVKPVL---ERTRRVLAQKPPGGNSQVALEASNARSRGRAAKVAEPCFPPSRGTKPPRRV 94
            L++PVL   E  R    ++P        L    ARS        EP   PS+G++P   V
Sbjct: 1923 LMEPVLLPKEAPRVARPERPRADTGHAFLAKPPARSG------LEPASSPSKGSEPRPLV 1976

Query: 95   AARTGGLTTARGPLSTAAAKGATHLPVSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFP 154
               +G  T AR P    A   A+  P + P +         +      Q   L SL  + 
Sbjct: 1977 PPVSGHATIARTPAKNLAPHHASPDPPAPPASASDPHREKTQSKPFSIQELELRSL-GYH 2035

Query: 155  GASVSPDGESGADHAPCCGLTRRPGV 180
            G+S SP+G           LT   G+
Sbjct: 2036 GSSYSPEGVEPVSPVSSPSLTHDKGL 2061


>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
          Length = 2524

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 39/146 (26%), Positives = 55/146 (37%), Gaps = 10/146 (6%)

Query: 38   LVKPVL---ERTRRVLAQKPPGGNSQVALEASNARSRGRAAKVAEPCFPPSRGTKPPRRV 94
            L++PVL   E  R    ++P        L    ARS        EP   PS+G++P   V
Sbjct: 1939 LMEPVLLPKEAPRVARPERPRADTGHAFLAKPPARSG------LEPASSPSKGSEPRPLV 1992

Query: 95   AARTGGLTTARGPLSTAAAKGATHLPVSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFP 154
               +G  T AR P    A   A+  P + P +         +      Q   L SL  + 
Sbjct: 1993 PPVSGHATIARTPAKNLAPHHASPDPPAPPASASDPHREKTQSKPFSIQELELRSL-GYH 2051

Query: 155  GASVSPDGESGADHAPCCGLTRRPGV 180
            G+S SP+G           LT   G+
Sbjct: 2052 GSSYSPEGVEPVSPVSSPSLTHDKGL 2077


>gi|214010175 CLIP-associating protein 1 isoform 3 [Homo sapiens]
          Length = 1471

 Score = 33.9 bits (76), Expect = 0.15
 Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 11/149 (7%)

Query: 48  RVLAQKPPGGNSQVALEASNARSRGRAAKV--------AEPCFPPSRGTKPPRRVAARTG 99
           R+  ++   G++       + R R RA  V        A P    SR + P + + +  G
Sbjct: 639 RIRTRRQSSGSATNVASTPDNRGRSRAKVVSQSQRSRSANPAGAGSRSSSPGKLLGSGYG 698

Query: 100 GLT--TARGPLSTAAAKGATHLPVSFPRTRESWGAHSGKEDETLHQ-GQGLTSLAAFPGA 156
           GLT  ++RGP  T +++  + +P S   +RE+     G +   L Q G+   S+ A    
Sbjct: 699 GLTGGSSRGPPVTPSSEKRSKIPRSQGCSRETSPNRIGLDRFGLGQPGRIPGSVNAMRVL 758

Query: 157 SVSPDGESGADHAPCCGLTRRPGVEWRRR 185
           S S D E+    A   G +R      RRR
Sbjct: 759 STSTDLEAAVADALLLGDSRSKKKPVRRR 787


>gi|214010173 CLIP-associating protein 1 isoform 2 [Homo sapiens]
          Length = 1479

 Score = 33.9 bits (76), Expect = 0.15
 Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 11/149 (7%)

Query: 48  RVLAQKPPGGNSQVALEASNARSRGRAAKV--------AEPCFPPSRGTKPPRRVAARTG 99
           R+  ++   G++       + R R RA  V        A P    SR + P + + +  G
Sbjct: 647 RIRTRRQSSGSATNVASTPDNRGRSRAKVVSQSQRSRSANPAGAGSRSSSPGKLLGSGYG 706

Query: 100 GLT--TARGPLSTAAAKGATHLPVSFPRTRESWGAHSGKEDETLHQ-GQGLTSLAAFPGA 156
           GLT  ++RGP  T +++  + +P S   +RE+     G +   L Q G+   S+ A    
Sbjct: 707 GLTGGSSRGPPVTPSSEKRSKIPRSQGCSRETSPNRIGLDRFGLGQPGRIPGSVNAMRVL 766

Query: 157 SVSPDGESGADHAPCCGLTRRPGVEWRRR 185
           S S D E+    A   G +R      RRR
Sbjct: 767 STSTDLEAAVADALLLGDSRSKKKPVRRR 795


>gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]
          Length = 2608

 Score = 33.9 bits (76), Expect = 0.15
 Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 32   ELSRHHLVKPVLERTRRVLAQKPPGGNSQVALEASNARSRGRAAKVAEPCFPPSRGT--K 89
            ++ R  +   V     R   Q+PPG     AL    A+ + + +  AEP   PSR     
Sbjct: 1693 KIKRRSVKAKVGTTLERAPGQRPPG-----ALGKKKAKGKAKGSLRAEPGATPSRDALFN 1747

Query: 90   PPRRVAARTGGLTTARGPLSTAAAKGATHLPV 121
            P R  A R  G   A   L  A  KG    PV
Sbjct: 1748 PSRAFACREEGSQLASERLKRATRKGTVLQPV 1779


>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 819

 Score = 33.5 bits (75), Expect = 0.20
 Identities = 55/223 (24%), Positives = 77/223 (34%), Gaps = 16/223 (7%)

Query: 47  RRVLAQKPPGGNSQVALEASNARSRGRAA-----KVAEPCFPPSRGTKPPRRVAARTGGL 101
           +++  QK   G  +  L        G+ A     K A      +RG    +  AA T  L
Sbjct: 57  KKLRRQKAAAGGKKARLRGQKGAVAGKEARQHWQKAAGAGGAENRGGGEQKAAAAGTKSL 116

Query: 102 TTARGPLSTAAAKGATHLPVSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPD 161
              RG       + A       PR R    A +G ++    +G G    AA   A V   
Sbjct: 117 G-GRGRKPRRRGQKAAATGSKKPRWRAQKSAAAGSKN----RGAGAQKAAA--AAGVKSQ 169

Query: 162 GESGADHAPCCGLTRRPGVEWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRP 221
           G      A   G   R G + RRR  + RG      R RE      +  R  R  +  RP
Sbjct: 170 GGEKPQKAAAAGAKSRSGKKPRRRGAKSRGDEDKKGRQREAKSRFGK-TRGGRRKKHRRP 228

Query: 222 HDKEATLVSRR---RKYRRERELRPRAVGTDASSPAASPGGAE 261
                   SRR   +K +++R    +A     S    S GG +
Sbjct: 229 KPAAGGAKSRRGGGKKPQKQRRRGQKAATGGKSRVGKSRGGGD 271


>gi|4506607 ribosomal protein L18 [Homo sapiens]
          Length = 188

 Score = 33.1 bits (74), Expect = 0.26
 Identities = 30/117 (25%), Positives = 42/117 (35%)

Query: 26  NQEALDELSRHHLVKPVLERTRRVLAQKPPGGNSQVALEASNARSRGRAAKVAEPCFPPS 85
           NQ  L  L      +P L  +R +   K PG  ++ A+         R  +V +      
Sbjct: 44  NQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCAL 103

Query: 86  RGTKPPRRVAARTGGLTTARGPLSTAAAKGATHLPVSFPRTRESWGAHSGKEDETLH 142
           R T   R    R GG       L+  + KG   + +S PR       H GK   T H
Sbjct: 104 RVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPH 160


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 33.1 bits (74), Expect = 0.26
 Identities = 50/199 (25%), Positives = 76/199 (38%), Gaps = 17/199 (8%)

Query: 54   PPGGNSQVALEASNARSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGPLSTAAA 113
            P G +S  +      +SR           P ++   PPRR ++R+    T +  LS  + 
Sbjct: 1649 PEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRS- 1707

Query: 114  KGATHLPVSF----PRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDGESGADHA 169
            + A+  P +     PR R S    S +  E     +   S ++    + S  G S +   
Sbjct: 1708 RSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKP 1767

Query: 170  PCCGL------TRRPGVEWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLR--- 220
               GL      +RR      RR DR  G +Q   R R+      R  R  R G G     
Sbjct: 1768 R--GLQRSRSRSRREKTRTTRRRDRS-GSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRS 1824

Query: 221  PHDKEATLVSRRRKYRRER 239
            P  +E++  S RR+  R R
Sbjct: 1825 PARQESSRTSSRRRRGRSR 1843


>gi|222418604 hypothetical protein LOC257407 [Homo sapiens]
          Length = 295

 Score = 32.3 bits (72), Expect = 0.45
 Identities = 23/64 (35%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 56  GGNSQVALEAS---NARSRGRAAKVAEPCFPPSRGTKPPRRVAARTGGLTTARGPLSTAA 112
           GG  QV L        +SR      A   FPP  G   P   AA   G   ARG    A 
Sbjct: 28  GGRGQVLLVGELWEREQSRALLRDFARAVFPPEPGAAKPGGAAAEGAGPGAARGAQRAAR 87

Query: 113 AKGA 116
           A GA
Sbjct: 88  AAGA 91


>gi|31563537 CLIP-associating protein 1 isoform 1 [Homo sapiens]
          Length = 1538

 Score = 32.0 bits (71), Expect = 0.59
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 15/136 (11%)

Query: 48  RVLAQKPPGGNSQVALEASNARSRGRAAKV--------AEPCFPPSRGTKPPRRVAARTG 99
           R+  ++   G++       + R R RA  V        A P    SR + P + + +  G
Sbjct: 639 RIRTRRQSSGSATNVASTPDNRGRSRAKVVSQSQRSRSANPAGAGSRSSSPGKLLGSGYG 698

Query: 100 GLT--TARGPLSTAAAKGATHLPVSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGAS 157
           GLT  ++RGP  T +++  + +P S   +RE+     G     L +   +   +   G S
Sbjct: 699 GLTGGSSRGPPVTPSSEKRSKIPRSQGCSRETSPNRIG-----LARSSRIPRPSMSQGCS 753

Query: 158 VSPDGESGADHAPCCG 173
                ES  D +P  G
Sbjct: 754 RDTSRESSRDTSPARG 769


>gi|158303333 synaptopodin isoform B [Homo sapiens]
          Length = 685

 Score = 31.6 bits (70), Expect = 0.77
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 38  LVKP--VLERTRRVLAQKPPGGNSQVALEASNARSR-GRAAKVAEPCFPPSRGTKPPRRV 94
           L KP  V+ RT R    + PGG SQ+       R   G  A   +P   P R  +P R +
Sbjct: 229 LAKPPSVVNRTARPFGIQAPGGTSQMERSPMLERRHFGEKAPAPQPPSLPDRSPRPQRHI 288

Query: 95  AART 98
            +R+
Sbjct: 289 MSRS 292


>gi|40353727 synaptopodin isoform A [Homo sapiens]
          Length = 903

 Score = 31.6 bits (70), Expect = 0.77
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 38  LVKP--VLERTRRVLAQKPPGGNSQVALEASNARSR-GRAAKVAEPCFPPSRGTKPPRRV 94
           L KP  V+ RT R    + PGG SQ+       R   G  A   +P   P R  +P R +
Sbjct: 229 LAKPPSVVNRTARPFGIQAPGGTSQMERSPMLERRHFGEKAPAPQPPSLPDRSPRPQRHI 288

Query: 95  AART 98
            +R+
Sbjct: 289 MSRS 292


>gi|5730073 KH domain containing, RNA binding, signal transduction
           associated 3 [Homo sapiens]
          Length = 346

 Score = 31.6 bits (70), Expect = 0.77
 Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 10/106 (9%)

Query: 68  ARSRGRAAKVAEPC-FPPSRGTKPPRRVAARTGGLTTARGPLSTAAAKGAT---HLPVSF 123
           A +RGR    A P      RGT  PR V +  G ++  RG L T  A+G     + P   
Sbjct: 201 AITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG-LLTPRARGVPPTGYRPPPP 259

Query: 124 PRTRESWGAHSGKED-ETLHQGQGLTSLAAFPGASVSPDGESGADH 168
           P T+E++G +   +   T +  Q   S       S S   +SGAD+
Sbjct: 260 PPTQETYGEYDYDDGYGTAYDEQSYDSY----DNSYSTPAQSGADY 301


>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
          Length = 2303

 Score = 31.6 bits (70), Expect = 0.77
 Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 19/80 (23%)

Query: 109  STAAAKGATHLPVSFPRTRESWGAHSGKEDET---------------LHQGQGLTSLAAF 153
            ST  A GAT LPV+ P  R + G   G ED T               L +   ++SL +F
Sbjct: 1112 STWRAPGATSLPVAIPAPRRNRGRGLGVEDATPSSSSENYVQETPLVLSRCSSVSSLGSF 1171

Query: 154  PGASVSPDGESGADHAPCCG 173
               S++    S     PC G
Sbjct: 1172 ESPSIA----SSIPSEPCSG 1187


>gi|238908524 hypothetical protein LOC389333 [Homo sapiens]
          Length = 1015

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 11/92 (11%)

Query: 60  QVALEASNARSRGRAAKVAE------PCFPPSRGTKPPRRVAARTGGLTTARGPLSTAAA 113
           +VALE   A +R R     +      P  PP     P  R+  RTG L  + GPL  AA 
Sbjct: 190 EVALEEGAAPARPRTVPKRQIELRPRPQSPPRAAGAPRPRLLLRTGSLDESLGPLQAAAG 249

Query: 114 KGATHL-----PVSFPRTRESWGAHSGKEDET 140
              T L     P +   +  ++G+    E ET
Sbjct: 250 FVQTALARKLSPEAPAPSSATFGSTGRSEPET 281


>gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 465

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 53/222 (23%), Positives = 78/222 (35%), Gaps = 51/222 (22%)

Query: 47  RRVLAQKPPGGNSQVALEASNARSRGRAAKVAEPCF--PPSRGT--KPPRRVAARTGGLT 102
           R  L ++PP   S    +     S+      +  C   P +RG   K PRR  A   G  
Sbjct: 104 RGCLGKEPPSQESWTRSDPRRCLSQDAVRSGSRVCRSRPQTRGGGGKQPRRQKAAVAGAK 163

Query: 103 TARGPLSTAAAKGATHLPVSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSPDG 162
           +  G                 P+ R    A +G +     +G G+ SL    G      G
Sbjct: 164 SRGGEGKK-------------PQRRGQKAATAGAKS----RGGGVRSL----GGKKMRRG 202

Query: 163 ESGADHAPCCGLTRRPGVEWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPH 222
           + GA  A  CG  ++P         R+RG+       +    GGVR +            
Sbjct: 203 QKGAAGAKRCGGGKQP---------RRRGQ-------KASKSGGVRCQTP---------- 236

Query: 223 DKEATLVSRRRKYRRERELRPRAVGTDASSPAASPGGAEAQR 264
            K A    + RK  R+R  +  A G +A++     GG E  R
Sbjct: 237 QKAAAQGVKSRKKLRQRGQKAAAAGQEAAAGKTCGGGGEKHR 278


>gi|169167715 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 285

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 187 DRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPHDKEATLVSRRRKYRRERELRPRAV 246
           DRQR ++++  R+R+      RW    R+ E  R  ++E     R+R+  RER+ R R +
Sbjct: 89  DRQRKRDRERQRWRDRDRKRERWGDRDRETETERQEERERQR-DRKREKDRERQ-RQREI 146

Query: 247 GTDASSPAASPGGAEAQRQ 265
           G D      +    + +R+
Sbjct: 147 GIDKDREIETEKDRDRERE 165



 Score = 29.6 bits (65), Expect = 2.9
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query: 181 EWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPHDKEATLVSRRRKYRRERE 240
           E  R+ DR+R K+++  R RE+G    R   T +D +  R   +      R R+ +++RE
Sbjct: 125 ERERQRDRKREKDRERQRQREIGIDKDREIETEKDRDREREMGETERYRDRERERQKQRE 184

Query: 241 LR 242
            R
Sbjct: 185 TR 186



 Score = 28.1 bits (61), Expect = 8.5
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 173 GLTRRPGVEWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPHDKEATLVSRR 232
           G+ +   +E  +  DR+R   +   R+R+      + R T RD +  R  +KE     R 
Sbjct: 147 GIDKDREIETEKDRDREREMGETE-RYRDRERERQKQRETRRDRDRERQREKEDRERDRD 205

Query: 233 RKYRRERE-LRPRAVGTD 249
           R+  RE++  R R  G D
Sbjct: 206 RQKEREKDRYRERETGRD 223


>gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo
           sapiens]
          Length = 1031

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 175 TRRPGVEWRRRPDRQRGKNQDVCRFREMGCGGVRWRRTARDGEGLRPHDKEATLVSRRRK 234
           +R P  +  +R D +R +++D  R RE      + R  +RD + LR         SR R+
Sbjct: 24  SRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRSRSRDRKRLRRSRSRERDRSRERR 83

Query: 235 YRRERE-LRPRAVGTDASSPAASPG 258
             R R+  R R+      S ++SPG
Sbjct: 84  RSRSRDRRRSRSRSRGRRSRSSSPG 108


>gi|239756804 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 236

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 41/154 (26%), Positives = 49/154 (31%), Gaps = 20/154 (12%)

Query: 90  PPRRVAARTGGLTTARGPLSTAAAKGATHLPVSFPRTRESWGAHSGKEDETLHQGQGLTS 149
           P  RVAA+    T    P     A+GA+    +   + +   AH G     L  G G   
Sbjct: 97  PSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAV 156

Query: 150 LAAFPGASVSPDGESGADHAPCCGLTRRPGVEWRRRPDRQRGKNQDVCRFREMGCGGVRW 209
                 A   P G+    H          G   R R  R RG          +G GG R 
Sbjct: 157 DGFVAQARPGPGGQQQGGH-------EAEGQHDRPRTGRGRG---------ALGAGGER- 199

Query: 210 RRTARDGEGLRPHDKEATLVSRRRKYRRERELRP 243
               R GE  R H   A    R R   R    RP
Sbjct: 200 ---GRAGERRRAHGGSAWRSWRTRPGGRGETGRP 230


>gi|239756268 PREDICTED: hypothetical protein XP_002344877 [Homo
           sapiens]
          Length = 252

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 41  PVLERTRRVLAQKP----PGGNSQVALEASNARSRGRAAKVA-EPCFPPSRGTKPPRRVA 95
           P+L+     LA +P    P   +      S A   GR  K+A  P   P R ++PP +  
Sbjct: 155 PLLQAAASTLAGRPRAPPPAPAAGQRGLGSGALGLGRREKLAARPAATPRRASRPPWQGC 214

Query: 96  ARTGGLTTARGPLSTAAA 113
               GL   RGPL   AA
Sbjct: 215 RGARGLGGGRGPLREDAA 232


>gi|239754668 PREDICTED: mucin 12 [Homo sapiens]
          Length = 1952

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 109 STAAAKGATHLPVSFPRTRESWGAHSGKEDETLHQGQGLTSLAAFPGASVSP--DGESGA 166
           S+  +   THLP S   +  S      +E  T H   G T   AFPG++  P    ES A
Sbjct: 562 SSPRSPDTTHLPASMTSSGVS------EESTTSHSRPGSTHTTAFPGSTTMPGLSQESTA 615

Query: 167 DHA 169
            H+
Sbjct: 616 SHS 618


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.133    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,557,967
Number of Sequences: 37866
Number of extensions: 646167
Number of successful extensions: 2868
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 2755
Number of HSP's gapped (non-prelim): 237
length of query: 271
length of database: 18,247,518
effective HSP length: 101
effective length of query: 170
effective length of database: 14,423,052
effective search space: 2451918840
effective search space used: 2451918840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.