Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ECSCR Sequence: fasta or formatted (205aa) NCBI GI: 118130809
Description:

endothelial cell-specific chemotaxis regulator

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4          9           2
 C cysteine            1.5          3           1
 D aspartate           2.4          5           1
 E glutamate           4.4          9           1
 F phenylalanine       2.9          6           1
 G glycine            10.2         21           2
 H histidine           1.0          2           1
 I isoleucine          5.4         11           2
 K lysine              3.9          8           1
 L leucine             8.8         18           2
 M methionine          3.4          7           1
 N asparagine          4.4          9           2
 P proline             6.3         13           2
 Q glutamine           3.4          7           1
 R arginine            3.4          7           1
 S serine             16.1         33           3
 T threonine           9.3         19           2
 V valine              7.8         16           4
 W tryptophan          0.5          1           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   endothelial cell-specific chemotaxis regulator [Hom... 
MUC5AC                0.035   mucin 5AC 
MUC5B                 0.035   mucin 5, subtype B, tracheobronchial 
CRB3                  0.029   crumbs 3 isoform b precursor 
MDC1                  0.024   mediator of DNA-damage checkpoint 1 
LZTS2                 0.024   leucine zipper, putative tumor suppressor 2 
MED1                  0.024   mediator complex subunit 1 
MUC17                 0.024   mucin 17 
MUC4                  0.021   mucin 4 isoform a 
TENC1                 0.021   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.021   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.021   tensin like C1 domain containing phosphatase isoform...
CRB3                  0.021   crumbs 3 isoform a precursor 
MLL                   0.021   myeloid/lymphoid or mixed-lineage leukemia protein [...
COL17A1               0.021   alpha 1 type XVII collagen 
NHSL1                 0.019   NHS-like 1 
DCHS1                 0.019   dachsous 1 precursor 
NUP214                0.019   nucleoporin 214kDa 
MUC12                 0.019   PREDICTED: mucin 12 
MUC12                 0.019   PREDICTED: mucin 12, cell surface associated 
ARFIP2                0.019   ADP-ribosylation factor interacting protein 2 
UMODL1                0.019   uromodulin-like 1 isoform 2 precursor 
TMEM27                0.019   transmembrane protein 27 
PDLIM5                0.016   PDZ and LIM domain 5 isoform b 
PDLIM5                0.016   PDZ and LIM domain 5 isoform a 
IKZF5                 0.016   zinc finger protein, subfamily 1A, 5 
LOC100133761          0.016   PREDICTED: similar to Mucin-6, partial 
SP4                   0.016   Sp4 transcription factor 
KCNK2                 0.016   potassium channel, subfamily K, member 2 isoform c ...
BRSK1                 0.016   BR serine/threonine kinase 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press