Guide to the Human Genome
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Name: LOC100133761 Sequence: fasta or formatted (350aa) NCBI GI: 169217460
Description:

PREDICTED: similar to Mucin-6, partial

Referenced in:

Mucins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         22           2
 C cysteine            0.0          0           0
 D aspartate           0.0          0           0
 E glutamate           0.6          2           1
 F phenylalanine       2.3          8           1
 G glycine             3.7         13           1
 H histidine           6.3         22           2
 I isoleucine          2.9         10           1
 K lysine              1.1          4           1
 L leucine             4.3         15           1
 M methionine          1.4          5           1
 N asparagine          1.4          5           1
 P proline            13.1         46           3
 Q glutamine           2.3          8           1
 R arginine            1.1          4           1
 S serine             17.4         61           2
 T threonine          31.4        110           4
 V valine              3.1         11           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Mucin-6, partial 
MUC6                  0.796   mucin 6, gastric 
MUC2                  0.200   mucin 2 precursor 
LOC100294420          0.194   PREDICTED: similar to mucin 2 
MUC3A                 0.159   PREDICTED: mucin 3A, cell surface associated, parti...
MUC5AC                0.144   mucin 5AC 
LOC100133408          0.142   PREDICTED: similar to mucin 
MUC5B                 0.141   mucin 5, subtype B, tracheobronchial 
LOC100134138          0.137   PREDICTED: similar to mucin, partial 
MUC3A                 0.128   PREDICTED: mucin 3A, intestinal 
MUC17                 0.128   mucin 17 
MUC3B                 0.125   PREDICTED: mucin 3B, cell surface associated, parti...
LOC100131514          0.122   PREDICTED: similar to hCG1747327, partial 
LOC100133790          0.120   PREDICTED: intestinal mucin-like, partial 
LOC729792             0.113   PREDICTED: hypothetical protein 
LOC729792             0.113   PREDICTED: hypothetical protein 
LOC729792             0.113   PREDICTED: hypothetical protein 
LOC100294501          0.113   PREDICTED: hypothetical protein 
LOC100294249          0.113   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.113   PREDICTED: hypothetical protein 
LOC100294204          0.113   PREDICTED: hypothetical protein 
LOC100294136          0.113   PREDICTED: hypothetical protein 
LOC100294091          0.113   PREDICTED: hypothetical protein 
LOC730401             0.113   PREDICTED: hypothetical protein 
LOC732156             0.112   PREDICTED: similar to Mucin-3A 
LOC100128719          0.110   PREDICTED: hypothetical protein, partial 
LOC100128719          0.110   PREDICTED: hypothetical protein, partial 
MUC12                 0.110   PREDICTED: mucin 12 
MUC4                  0.110   mucin 4 isoform a 
LOC100130716          0.109   PREDICTED: similar to mucin 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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