Guide to the Human Genome
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Name: CRB3 Sequence: fasta or formatted (120aa) NCBI GI: 21040241
Description:

crumbs 3 isoform a precursor

Referenced in:

Epidermal Growth Factor
PDZ Domain

Other entries for this name:
alt prot [123aa] crumbs 3 isoform b precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         12           2
 C cysteine            0.0          0           0
 D aspartate           0.8          1           1
 E glutamate           6.7          8           2
 F phenylalanine       1.7          2           1
 G glycine             7.5          9           1
 H histidine           0.0          0           0
 I isoleucine          4.2          5           2
 K lysine              2.5          3           1
 L leucine            18.3         22           3
 M methionine          0.8          1           1
 N asparagine          4.2          5           1
 P proline             8.3         10           2
 Q glutamine           3.3          4           1
 R arginine            7.5          9           1
 S serine              9.2         11           4
 T threonine           6.7          8           2
 V valine              5.8          7           2
 W tryptophan          1.7          2           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   crumbs 3 isoform a precursor 
CRB3                  0.803   crumbs 3 isoform b precursor 
CRB2                  0.139   crumbs homolog 2 
CRB1                  0.067   crumbs homolog 1 precursor 
SLITRK5               0.043   SLIT and NTRK-like family, member 5 
ECSCR                 0.038   endothelial cell-specific chemotaxis regulator [Hom...
ADRM1                 0.038   adhesion regulating molecule 1 precursor 
ADRM1                 0.038   adhesion regulating molecule 1 precursor 
PTPRA                 0.029   protein tyrosine phosphatase, receptor type, A isofor...
PTPRCAP               0.024   protein tyrosine phosphatase, receptor type, C-associ...
JARID2                0.024   jumonji, AT rich interactive domain 2 protein 
LRRC4                 0.024   leucine rich repeat containing 4 
LILRB2                0.024   leukocyte immunoglobulin-like receptor, subfamily B...
CD300LG               0.024   CD300 molecule-like family member g 
PVRL2                 0.019   poliovirus receptor related 2 isoform delta precurs...
VCAN                  0.019   versican isoform 1 
PNMA3                 0.019   paraneoplastic cancer-testis-brain antigen 
LILRB1                0.014   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB1                0.014   leukocyte immunoglobulin-like receptor, subfamily B...
DNHD1                 0.014   dynein heavy chain domain 1 isoform 1 
LILRB1                0.014   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB1                0.014   leukocyte immunoglobulin-like receptor, subfamily B...
MED13                 0.014   mediator complex subunit 13 
C20orf151             0.014   hypothetical protein LOC140893 
DIS3L2                0.014   DIS3 mitotic control homolog (S. cerevisiae)-like 2...
HSPG2                 0.010   heparan sulfate proteoglycan 2 
LOC727804             0.010   PREDICTED: hypothetical protein 
SF3A1                 0.010   splicing factor 3a, subunit 1, 120kDa isoform 2 [Hom...
SF3A1                 0.010   splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo...
LOC100287824          0.010   PREDICTED: hypothetical protein XP_002342669 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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