Guide to the Human Genome
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Name: TMEM27 Sequence: fasta or formatted (222aa) NCBI GI: 15042969
Description:

transmembrane protein 27

Referenced in:

Kidney

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         18           1
 C cysteine            1.8          4           1
 D aspartate           5.4         12           2
 E glutamate           6.8         15           2
 F phenylalanine       5.9         13           2
 G glycine             3.2          7           2
 H histidine           1.8          4           1
 I isoleucine          9.5         21           3
 K lysine              5.0         11           1
 L leucine             9.5         21           2
 M methionine          3.6          8           1
 N asparagine          6.3         14           2
 P proline             5.9         13           2
 Q glutamine           2.3          5           1
 R arginine            5.0         11           3
 S serine              5.0         11           1
 T threonine           5.4         12           1
 V valine              6.8         15           2
 W tryptophan          2.3          5           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 27 
ACE2                  0.287   angiotensin I converting enzyme 2 precursor 
MUC1                  0.019   mucin 1 isoform 3 precursor 
MUC1                  0.019   mucin 1 isoform 2 precursor 
MUC1                  0.019   mucin 1 isoform 1 precursor 
PTPRJ                 0.019   protein tyrosine phosphatase, receptor type, J isof...
GRID2                 0.016   glutamate receptor, ionotropic, delta 2 
ECSCR                 0.016   endothelial cell-specific chemotaxis regulator [Hom...
LOC652614             0.016   PREDICTED: similar to MHC class I antigen 
CDH11                 0.014   cadherin 11, type 2 preproprotein 
ITGA8                 0.014   integrin, alpha 8 
MUC1                  0.012   mucin 1 isoform 5 precursor 
ITGAV                 0.012   integrin alpha-V isoform 3 precursor 
ITGAV                 0.012   integrin alpha-V isoform 2 
ITGAV                 0.012   integrin alpha-V isoform 1 precursor 
CDH20                 0.012   cadherin 20, type 2 preproprotein 
ITGA2B                0.012   integrin alpha 2b preproprotein 
PTPRS                 0.009   protein tyrosine phosphatase, receptor type, sigma ...
ITGA11                0.009   integrin, alpha 11 precursor 
ACSBG1                0.009   lipidosin 
OPN1LW                0.009   opsin 1 (cone pigments), long-wave-sensitive 
KIR3DL3               0.009   killer cell immunoglobulin-like receptor, three doma...
PCDH7                 0.009   protocadherin 7 isoform b precursor 
PCDH7                 0.009   protocadherin 7 isoform c precursor 
PCDH7                 0.009   protocadherin 7 isoform a precursor 
DPCR1                 0.007   diffuse panbronchiolitis critical region 1 protein ...
PTPRS                 0.007   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.007   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.007   protein tyrosine phosphatase, receptor type, sigma ...
SLC26A6               0.007   solute carrier family 26, member 6 isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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