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Search of human proteins with 239751466
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751466 PREDICTED: hypothetical protein XP_002347845 [Homo
sapiens]
(80 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751466 PREDICTED: hypothetical protein XP_002347845 [Homo ... 175 8e-45
gi|239756961 PREDICTED: hypothetical protein [Homo sapiens] 161 1e-40
gi|239745970 PREDICTED: hypothetical protein XP_002343628 [Homo ... 122 6e-29
gi|239756227 PREDICTED: hypothetical protein [Homo sapiens] 97 2e-21
gi|239752641 PREDICTED: hypothetical protein [Homo sapiens] 97 2e-21
gi|239745050 PREDICTED: hypothetical protein XP_002343356 [Homo ... 97 2e-21
gi|7706501 WW domain binding protein 11 [Homo sapiens] 35 0.010
gi|34101282 sodium channel, nonvoltage-gated 1, delta isoform 2 ... 32 0.084
gi|194353989 sodium channel, nonvoltage-gated 1, delta isoform 1... 32 0.084
gi|38158015 mastermind-like 3 [Homo sapiens] 32 0.11
gi|32307128 nuclear receptor coactivator 6 [Homo sapiens] 31 0.19
gi|87239981 tankyrase, TRF1-interacting ankyrin-related ADP-ribo... 31 0.19
gi|8922157 proline rich 13 isoform 1 [Homo sapiens] 30 0.32
gi|239754940 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 30 0.42
gi|33636717 hypothetical protein LOC80256 [Homo sapiens] 30 0.42
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 30 0.42
gi|62945417 dystrophia myotonica-containing WD repeat motif prot... 30 0.42
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 30 0.54
gi|20143482 melanoma antigen family E, 1 [Homo sapiens] 30 0.54
gi|239754303 PREDICTED: hypothetical protein [Homo sapiens] 29 0.71
gi|239748842 PREDICTED: hypothetical protein XP_002346816 [Homo ... 29 0.71
gi|239742869 PREDICTED: hypothetical protein XP_002342635 [Homo ... 29 0.71
gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens] 29 0.71
gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens] 29 0.71
gi|13787217 FAT tumor suppressor 2 precursor [Homo sapiens] 29 0.71
gi|7705851 coiled-coil-helix-coiled-coil-helix domain containing... 29 0.71
gi|241982780 programmed cell death 6 interacting protein isoform... 29 0.93
gi|22027538 programmed cell death 6 interacting protein isoform ... 29 0.93
gi|94421475 paternally expressed 10 isoform RF1/2 [Homo sapiens] 29 0.93
>gi|239751466 PREDICTED: hypothetical protein XP_002347845 [Homo
sapiens]
Length = 80
Score = 175 bits (443), Expect = 8e-45
Identities = 80/80 (100%), Positives = 80/80 (100%)
Query: 1 MSPGLGVHLQRKHVTKHLPVPGPISVGPQAAPPGATGHADGNIPAGPGLCSPQLLLPGGQ 60
MSPGLGVHLQRKHVTKHLPVPGPISVGPQAAPPGATGHADGNIPAGPGLCSPQLLLPGGQ
Sbjct: 1 MSPGLGVHLQRKHVTKHLPVPGPISVGPQAAPPGATGHADGNIPAGPGLCSPQLLLPGGQ 60
Query: 61 LFWAPEVLRSPFPGPGTPSA 80
LFWAPEVLRSPFPGPGTPSA
Sbjct: 61 LFWAPEVLRSPFPGPGTPSA 80
>gi|239756961 PREDICTED: hypothetical protein [Homo sapiens]
Length = 105
Score = 161 bits (407), Expect = 1e-40
Identities = 80/105 (76%), Positives = 80/105 (76%), Gaps = 25/105 (23%)
Query: 1 MSPGLGVHLQRKHVTKHLPVPGPISVGPQAAPPGAT------------------------ 36
MSPGLGVHLQRKHVTKHLPVPGPISVGPQAAPPGAT
Sbjct: 1 MSPGLGVHLQRKHVTKHLPVPGPISVGPQAAPPGATVTHPPTKPLICSGGFIPGTRPRLC 60
Query: 37 -GHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRSPFPGPGTPSA 80
GHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRSPFPGPGTPSA
Sbjct: 61 SGHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRSPFPGPGTPSA 105
>gi|239745970 PREDICTED: hypothetical protein XP_002343628 [Homo
sapiens]
Length = 138
Score = 122 bits (306), Expect = 6e-29
Identities = 70/138 (50%), Positives = 70/138 (50%), Gaps = 58/138 (42%)
Query: 1 MSPGLGVHLQRKHVTKHLPV------------PGPISVGPQAAP---------------- 32
MSPGLGVHLQRKHVTKHLPV PG P P
Sbjct: 1 MSPGLGVHLQRKHVTKHLPVPGPISVGPQAAPPGATVTHPPTKPLICSGGFIPGTRPRLC 60
Query: 33 ------------------------------PGATGHADGNIPAGPGLCSPQLLLPGGQLF 62
PG GHADGNIPAGPGLCSPQLLLPGGQLF
Sbjct: 61 SREGEGRKGEALGRQGPLRSSSLLPPLPTWPGREGHADGNIPAGPGLCSPQLLLPGGQLF 120
Query: 63 WAPEVLRSPFPGPGTPSA 80
WAPEVLRSPFPGPGTPSA
Sbjct: 121 WAPEVLRSPFPGPGTPSA 138
>gi|239756227 PREDICTED: hypothetical protein [Homo sapiens]
Length = 50
Score = 97.4 bits (241), Expect = 2e-21
Identities = 44/48 (91%), Positives = 44/48 (91%)
Query: 33 PGATGHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRSPFPGPGTPSA 80
PG GHADGNIPAGPGLCSPQLLL G QLFWAPEVLRSPFPGPGTPSA
Sbjct: 3 PGREGHADGNIPAGPGLCSPQLLLLGWQLFWAPEVLRSPFPGPGTPSA 50
>gi|239752641 PREDICTED: hypothetical protein [Homo sapiens]
Length = 50
Score = 97.4 bits (241), Expect = 2e-21
Identities = 44/48 (91%), Positives = 44/48 (91%)
Query: 33 PGATGHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRSPFPGPGTPSA 80
PG GHADGNIPAGPGLCSPQLLL G QLFWAPEVLRSPFPGPGTPSA
Sbjct: 3 PGREGHADGNIPAGPGLCSPQLLLLGWQLFWAPEVLRSPFPGPGTPSA 50
>gi|239745050 PREDICTED: hypothetical protein XP_002343356 [Homo
sapiens]
Length = 50
Score = 97.4 bits (241), Expect = 2e-21
Identities = 44/48 (91%), Positives = 44/48 (91%)
Query: 33 PGATGHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRSPFPGPGTPSA 80
PG GHADGNIPAGPGLCSPQLLL G QLFWAPEVLRSPFPGPGTPSA
Sbjct: 3 PGREGHADGNIPAGPGLCSPQLLLLGWQLFWAPEVLRSPFPGPGTPSA 50
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 35.4 bits (80), Expect = 0.010
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 19 PVPGPISVGPQAAPPGATGHADGNIPAGPGLCSPQLLLPGGQ--LFWAPEVLRSPFPGPG 76
P+PGP +GP APP +P GP +P L P G L L P P PG
Sbjct: 406 PMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPG 465
Query: 77 TP 78
P
Sbjct: 466 RP 467
>gi|34101282 sodium channel, nonvoltage-gated 1, delta isoform 2
[Homo sapiens]
Length = 638
Score = 32.3 bits (72), Expect = 0.084
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 19 PVPGPISVGPQAA--PPGATGHADGNIPAGPGLCSPQLLLPG 58
P G S+ P+A+ PP A G +D P+GP L P+++LPG
Sbjct: 577 PASGASSIKPEASQMPPPAGGTSDDPEPSGPHL--PRVMLPG 616
>gi|194353989 sodium channel, nonvoltage-gated 1, delta isoform 1
[Homo sapiens]
Length = 704
Score = 32.3 bits (72), Expect = 0.084
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 19 PVPGPISVGPQAA--PPGATGHADGNIPAGPGLCSPQLLLPG 58
P G S+ P+A+ PP A G +D P+GP L P+++LPG
Sbjct: 643 PASGASSIKPEASQMPPPAGGTSDDPEPSGPHL--PRVMLPG 682
>gi|38158015 mastermind-like 3 [Homo sapiens]
Length = 1133
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 13 HVTKHLPVPGPISVGPQ--AAPPGATGHADGNIPAGPGLCSPQ 53
H + PV P + GP + PPG+ G G PAGPG Q
Sbjct: 687 HGQEQHPVGLPRTTGPMQSSVPPGSGGMVSGASPAGPGFLGSQ 729
>gi|32307128 nuclear receptor coactivator 6 [Homo sapiens]
Length = 2063
Score = 31.2 bits (69), Expect = 0.19
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 11 RKHVTKHLPV-PGPISVGPQAAPPGATGHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLR 69
RK V + P P + A+ P A+G ++P GP ++LP QL ++
Sbjct: 1110 RKMVYQESPQNPSSSPLAEMASLPEASGSEAPSVPGGPNNMPSHVVLPQNQL-----MMT 1164
Query: 70 SPFPGPGTPSA 80
P PGP SA
Sbjct: 1165 GPKPGPSPLSA 1175
>gi|87239981 tankyrase, TRF1-interacting ankyrin-related
ADP-ribose polymerase [Homo sapiens]
Length = 1327
Score = 31.2 bits (69), Expect = 0.19
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 8 HLQRKHVTKHLPVPGPISVGPQAAPPGATGHADGNIPAGP---GL---CSPQ--LLLPGG 59
H H + P PG + P PP + G A G PA P GL SP+ L LP G
Sbjct: 9 HHHHHHQQQLQPAPGASAPPPPPPPPLSPGLAPGTTPASPTASGLAPFASPRHGLALPEG 68
Query: 60 Q-LFWAPEVLRSPFPGPGT 77
P+ RSP P GT
Sbjct: 69 DGSRDPPDRPRSPDPVDGT 87
>gi|8922157 proline rich 13 isoform 1 [Homo sapiens]
Length = 148
Score = 30.4 bits (67), Expect = 0.32
Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 19 PVPGPISVGPQAAPPGATGHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRSPFPGPGTP 78
P+ P GP PPGA P GP PQ PG Q P P P PG P
Sbjct: 31 PINPPFPPGPCPPPPGAPHGNPAFPPGGPPHPVPQPGYPGCQPL-GPYPPPYPPPAPGIP 89
>gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 30.0 bits (66), Expect = 0.42
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 12/60 (20%)
Query: 19 PVPGPISVGPQAAPPGATGHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRSPFPGPGTP 78
P PGP+ P + PP P P + + Q LP W P+ RSP P P
Sbjct: 112 PSPGPLPARPSSPPPS---------PPSPPVPTAQSSLPAP---WPPQGPRSPAPSLRAP 159
Score = 25.8 bits (55), Expect = 7.8
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 21 PGPISVGPQAAPPGATGHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRSPFP--GPGTP 78
P P ++ P+ AP + G +PA P SP P + A L +P+P GP +P
Sbjct: 95 PLPPALQPRGAPAVPAAPSPGPLPARPS--SPPPSPPSPPVPTAQSSLPAPWPPQGPRSP 152
Query: 79 S 79
+
Sbjct: 153 A 153
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 30.0 bits (66), Expect = 0.42
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 6/32 (18%)
Query: 19 PVPGPISVGPQAAPPGATGHADGNIPA-GPGL 49
P PGP+S PQ PPG G +PA GP L
Sbjct: 644 PPPGPLSKAPQPVPPGV-----GELPARGPRL 670
Score = 28.1 bits (61), Expect = 1.6
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 21 PGPISVGPQAAPPGATGHADGNIPAGPGLCSPQLLLPGGQLFWAPE--VLRSPFPGPGTP 78
PGP S G A PP + + P S Q GG WA E P PGP TP
Sbjct: 839 PGPPS-GATALPPTSAAPSAQGSPQPSASSSSQFSTSGGP--WARERRAGEEPVPGPMTP 895
Query: 79 S 79
+
Sbjct: 896 T 896
>gi|33636717 hypothetical protein LOC80256 [Homo sapiens]
Length = 538
Score = 30.0 bits (66), Expect = 0.42
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 25 SVGPQAAPPGATGHADGNIPAGPGLCSP----QLLLPGGQLFWAPEV 67
S+ P+ +P A GH+ + P GPG P + LLP G+ AP+V
Sbjct: 210 SLWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAGE---APDV 253
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 30.0 bits (66), Expect = 0.42
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 21/60 (35%)
Query: 21 PGPISVGPQAAPPGATG-------------------HAD--GNIPAGPGLCSPQLLLPGG 59
PGP+ GP PPG G HAD ++P GPG+ + PGG
Sbjct: 609 PGPMGPGPNMGPPGPMGGPMHPDMHPDMHPDMHPDMHADMHADMPMGPGMNPGPPMGPGG 668
>gi|62945417 dystrophia myotonica-containing WD repeat motif
protein [Homo sapiens]
Length = 674
Score = 30.0 bits (66), Expect = 0.42
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 19 PVPGPISVGPQAAPPGATGHADGNIPAGPG 48
P PGP S A+ PGA G A PAGPG
Sbjct: 61 PPPGPAS----ASGPGAAGPASSPPPAGPG 86
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 29.6 bits (65), Expect = 0.54
Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 16/69 (23%)
Query: 16 KHLPVPGPISVGPQAAPPGATGHADGNIPAGPGLCSPQLLLPGGQLFW--------APEV 67
+H P PGP GP P G G P GP L P GG FW +
Sbjct: 641 QHFP-PGP--GGPMPGPHGGPGG-----PVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPM 692
Query: 68 LRSPFPGPG 76
P PGPG
Sbjct: 693 RGGPGPGPG 701
>gi|20143482 melanoma antigen family E, 1 [Homo sapiens]
Length = 957
Score = 29.6 bits (65), Expect = 0.54
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 15 TKHLPVPGP-ISVGPQAAPPGATGHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRSPFP 73
T LP+PG +S + PP A+ +D ++P PG + L+ P VL +P
Sbjct: 354 TSVLPIPGEGLST---SVPPTASDGSDTSVPPTPGEGASTLVQPTAPDGPGSSVLPNPGE 410
Query: 74 GPGT 77
GP T
Sbjct: 411 GPST 414
>gi|239754303 PREDICTED: hypothetical protein [Homo sapiens]
Length = 185
Score = 29.3 bits (64), Expect = 0.71
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 19 PVPGPISVGPQAAPPGATGHADGNIPAGPGLCS-PQLLLPGGQLFWAPEVL---RSPFPG 74
P PGP++ GP+++ G G C P P +L WA E RS FP
Sbjct: 68 PKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAGGRSRFPM 127
Query: 75 P 75
P
Sbjct: 128 P 128
>gi|239748842 PREDICTED: hypothetical protein XP_002346816 [Homo
sapiens]
Length = 185
Score = 29.3 bits (64), Expect = 0.71
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 19 PVPGPISVGPQAAPPGATGHADGNIPAGPGLCS-PQLLLPGGQLFWAPEVL---RSPFPG 74
P PGP++ GP+++ G G C P P +L WA E RS FP
Sbjct: 68 PKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAGGRSRFPM 127
Query: 75 P 75
P
Sbjct: 128 P 128
>gi|239742869 PREDICTED: hypothetical protein XP_002342635 [Homo
sapiens]
Length = 185
Score = 29.3 bits (64), Expect = 0.71
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 19 PVPGPISVGPQAAPPGATGHADGNIPAGPGLCS-PQLLLPGGQLFWAPEVL---RSPFPG 74
P PGP++ GP+++ G G C P P +L WA E RS FP
Sbjct: 68 PKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAGGRSRFPM 127
Query: 75 P 75
P
Sbjct: 128 P 128
>gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens]
Length = 516
Score = 29.3 bits (64), Expect = 0.71
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 25 SVGPQAAPPGATGHADGNIPAGPGLCSPQLLLPGGQLF-WAPEVLRSPFPGP 75
S G P A G +P G C+ LP G+L+ WA E SP P P
Sbjct: 213 SWGADPVPTKAPGEGQEGLPL-TGACAGGPGLPAGELYGWAVETTPSPGPQP 263
>gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens]
Length = 503
Score = 29.3 bits (64), Expect = 0.71
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 25 SVGPQAAPPGATGHADGNIPAGPGLCSPQLLLPGGQLF-WAPEVLRSPFPGP 75
S G P A G +P G C+ LP G+L+ WA E SP P P
Sbjct: 200 SWGADPVPTKAPGEGQEGLPL-TGACAGGPGLPAGELYGWAVETTPSPGPQP 250
>gi|13787217 FAT tumor suppressor 2 precursor [Homo sapiens]
Length = 4349
Score = 29.3 bits (64), Expect = 0.71
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Query: 21 PGPISVGPQAAPPGATGHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRS---PFP---- 73
P SV P+ P H+D S +++ PGG + W P R+ +P
Sbjct: 4139 PVVCSVPPRLPPAAVPSHSDNEPVIKRTWSSEEMVYPGGAMVWPPTYSRNERWEYPHSEV 4198
Query: 74 --GPGTPSA 80
GP PSA
Sbjct: 4199 TQGPLPPSA 4207
>gi|7705851 coiled-coil-helix-coiled-coil-helix domain containing
2 [Homo sapiens]
Length = 151
Score = 29.3 bits (64), Expect = 0.71
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 19 PVPGPISVGPQAAPPGATGHADGNIPAGPGLCSPQLLLPGG 59
P P P++ P AAPP A G + P PGL + G
Sbjct: 26 PRPAPVAQPPAAAPPSAVG-SSAAAPRQPGLMAQMATTAAG 65
>gi|241982780 programmed cell death 6 interacting protein isoform 2
[Homo sapiens]
Length = 873
Score = 28.9 bits (63), Expect = 0.93
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 15/72 (20%)
Query: 21 PGPISVGPQAAPPGATGHADGNIPAGPGLCSPQLLLPGGQLFWA--------PEVL---- 68
P P A PP A G P PG C Q+ +P G +A P V
Sbjct: 789 PAPSQTPGSAPPPQAQGPPYPTYPGYPGYC--QMPMPMGYNPYAYGQYNMPYPPVYHQSP 846
Query: 69 -RSPFPGPGTPS 79
++P+PGP PS
Sbjct: 847 GQAPYPGPQQPS 858
>gi|22027538 programmed cell death 6 interacting protein isoform 1
[Homo sapiens]
Length = 868
Score = 28.9 bits (63), Expect = 0.93
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 15/72 (20%)
Query: 21 PGPISVGPQAAPPGATGHADGNIPAGPGLCSPQLLLPGGQLFWA--------PEVL---- 68
P P A PP A G P PG C Q+ +P G +A P V
Sbjct: 784 PAPSQTPGSAPPPQAQGPPYPTYPGYPGYC--QMPMPMGYNPYAYGQYNMPYPPVYHQSP 841
Query: 69 -RSPFPGPGTPS 79
++P+PGP PS
Sbjct: 842 GQAPYPGPQQPS 853
>gi|94421475 paternally expressed 10 isoform RF1/2 [Homo sapiens]
Length = 708
Score = 28.9 bits (63), Expect = 0.93
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 34 GATGHADGNIPAGPGLCSPQLLLPG----GQLFWAPEVLRSPFPGPGTP 78
G GH N PA SP LPG G PE++RSP +P
Sbjct: 299 GTGGHYADNCPAKASKSSPAGKLPGPAVEGPSATGPEIIRSPQDDASSP 347
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.142 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,776,803
Number of Sequences: 37866
Number of extensions: 393976
Number of successful extensions: 1556
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 1434
Number of HSP's gapped (non-prelim): 249
length of query: 80
length of database: 18,247,518
effective HSP length: 52
effective length of query: 28
effective length of database: 16,278,486
effective search space: 455797608
effective search space used: 455797608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.