Guide to the Human Genome
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Name: CHCHD2 Sequence: fasta or formatted (151aa) NCBI GI: 7705851
Description:

coiled-coil-helix-coiled-coil-helix domain containing 2

Referenced in:

Coiled-Coil Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.9         27           3
 C cysteine            2.6          4           1
 D aspartate           1.3          2           1
 E glutamate           4.0          6           1
 F phenylalanine       2.0          3           1
 G glycine             9.9         15           2
 H histidine           1.3          2           1
 I isoleucine          2.6          4           1
 K lysine              2.0          3           1
 L leucine             5.3          8           1
 M methionine          3.3          5           1
 N asparagine          2.6          4           1
 P proline            11.9         18           2
 Q glutamine           9.9         15           4
 R arginine            6.6         10           1
 S serine              6.6         10           2
 T threonine           4.6          7           2
 V valine              4.0          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil-helix-coiled-coil-helix domain containing... 
LOC645317             0.933   PREDICTED: similar to coiled-coil-helix-coiled-coil...
LOC645317             0.933   PREDICTED: similar to coiled-coil-helix-coiled-coil...
LOC645317             0.933   PREDICTED: similar to coiled-coil-helix-coiled-coil...
CHCHD10               0.454   coiled-coil-helix-coiled-coil-helix domain containin...
SAMD1                 0.078   sterile alpha motif domain containing 1 
KAT2A                 0.064   general control of amino acid synthesis 5-like 2 [H...
MED25                 0.060   mediator complex subunit 25 
YTHDF1                0.053   YTH domain family, member 1 
TAF4                  0.053   TBP-associated factor 4 
NACA                  0.053   nascent polypeptide-associated complex alpha subuni...
EIF3F                 0.053   eukaryotic translation initiation factor 3, subunit 5...
FOXD1                 0.053   forkhead box D1 
CNOT3                 0.050   CCR4-NOT transcription complex, subunit 3 
LMTK3                 0.046   lemur tyrosine kinase 3 
BAT2                  0.046   HLA-B associated transcript-2 
NXPH4                 0.043   neurexophilin 4 
CUX1                  0.043   cut-like homeobox 1 isoform a 
PRDM2                 0.043   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.043   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.043   retinoblastoma protein-binding zinc finger protein i...
MUC7                  0.043   mucin 7, secreted precursor 
LOC100293848          0.043   PREDICTED: hypothetical protein 
LOC100290829          0.043   PREDICTED: hypothetical protein XP_002346522 
LOC100288535          0.043   PREDICTED: hypothetical protein XP_002342360 
MUC7                  0.043   mucin 7, secreted precursor 
MUC7                  0.043   mucin 7, secreted precursor 
APC2                  0.043   adenomatosis polyposis coli 2 
ZNF580                0.043   zinc finger protein 580 
RICH2                 0.043   Rho GTPase-activating protein RICH2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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