Guide to the Human Genome
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Name: LOC100292276 Sequence: fasta or formatted (185aa) NCBI GI: 239754303
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         13           2
 C cysteine            3.8          7           2
 D aspartate           0.0          0           0
 E glutamate           4.3          8           1
 F phenylalanine       4.3          8           1
 G glycine            10.8         20           2
 H histidine           1.6          3           1
 I isoleucine          2.7          5           1
 K lysine              4.9          9           1
 L leucine             8.1         15           1
 M methionine          2.2          4           1
 N asparagine          1.1          2           1
 P proline             9.7         18           1
 Q glutamine           7.0         13           1
 R arginine            7.0         13           2
 S serine              9.7         18           3
 T threonine           8.1         15           2
 V valine              3.2          6           1
 W tryptophan          2.2          4           1
 Y tyrosine            2.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291133          1.000   PREDICTED: hypothetical protein XP_002346816 
LOC100287080          1.000   PREDICTED: hypothetical protein XP_002342635 
DCHS1                 0.038   dachsous 1 precursor 
C1orf229              0.030   hypothetical protein LOC388759 
EMID1                 0.025   EMI domain containing 1 
ITPKA                 0.016   1D-myo-inositol-trisphosphate 3-kinase A 
LOC100127899          0.014   PREDICTED: hypothetical protein 
LOC727967             0.014   PREDICTED: similar to block of proliferation 1 [Hom...
BOP1                  0.014   block of proliferation 1 
WTIP                  0.014   Wilms tumor 1 interacting protein 
VWA5B2                0.011   von Willebrand factor A domain containing 5B2 [Homo...
LOC100291048          0.011   PREDICTED: hypothetical protein XP_002347845 
ZIC5                  0.011   zinc finger protein of the cerebellum 5 
KIAA1522              0.011   hypothetical protein LOC57648 
TTC9B                 0.011   tetratricopeptide repeat domain 9B 
BAHD1                 0.011   bromo adjacent homology domain containing 1 
PLCH2                 0.008   phospholipase C, eta 2 
RLTPR                 0.008   RGD motif, leucine rich repeats, tropomodulin domain...
PTCHD3                0.008   patched domain containing 3 
RHPN1                 0.008   rhophilin 1 
LOC100293286          0.008   PREDICTED: hypothetical protein 
LOC100290832          0.008   PREDICTED: hypothetical protein XP_002347902 
LOC100289128          0.008   PREDICTED: hypothetical protein XP_002343651 
GPR98                 0.008   G protein-coupled receptor 98 precursor 
FAM22F                0.008   hypothetical protein LOC54754 
IGSF9B                0.008   immunoglobulin superfamily, member 9B 
RARA                  0.008   retinoic acid receptor, alpha isoform 1 
RARA                  0.008   retinoic acid receptor, alpha isoform 1 
SUPT5H                0.008   suppressor of Ty 5 homolog isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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