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Search of human proteins with 239751298
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751298 PREDICTED: hypothetical protein XP_002347799 [Homo
sapiens]
(236 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756804 PREDICTED: hypothetical protein [Homo sapiens] 484 e-137
gi|239751298 PREDICTED: hypothetical protein XP_002347799 [Homo ... 484 e-137
gi|239745795 PREDICTED: hypothetical protein XP_002343591 [Homo ... 484 e-137
gi|110624765 POU domain, class 3, transcription factor 1 [Homo s... 48 6e-06
gi|239742988 PREDICTED: hypothetical protein [Homo sapiens] 45 5e-05
gi|28875797 small protein rich in arginine and glycine [Homo sap... 44 1e-04
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 42 4e-04
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 42 5e-04
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 42 5e-04
gi|48762934 alpha 2 type I collagen [Homo sapiens] 42 5e-04
gi|156616290 collagen type VI alpha 6 [Homo sapiens] 42 5e-04
gi|169208819 PREDICTED: similar to kinase D-interacting substrat... 42 6e-04
gi|169208593 PREDICTED: similar to kinase D-interacting substrat... 42 6e-04
gi|169168886 PREDICTED: hypothetical protein [Homo sapiens] 42 6e-04
gi|169208169 PREDICTED: similar to kinase D-interacting substrat... 42 6e-04
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 41 8e-04
gi|239743123 PREDICTED: hypothetical protein [Homo sapiens] 41 8e-04
gi|169194607 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|169201944 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|169192119 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|10864053 myozenin 1 [Homo sapiens] 40 0.002
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 39 0.004
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 39 0.004
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 39 0.004
gi|169171388 PREDICTED: hypothetical protein [Homo sapiens] 39 0.004
gi|169169847 PREDICTED: hypothetical protein [Homo sapiens] 39 0.004
gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo ... 39 0.004
gi|239749096 PREDICTED: hypothetical protein [Homo sapiens] 39 0.004
gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo ... 39 0.004
gi|4506501 regulatory factor X-associated protein [Homo sapiens] 39 0.004
>gi|239756804 PREDICTED: hypothetical protein [Homo sapiens]
Length = 236
Score = 484 bits (1246), Expect = e-137
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MHICASEVLTTGRASSRGAPLTFILPPLVLRSRILAKCFCRHLRSWALQGLKLLLGWSPS 60
MHICASEVLTTGRASSRGAPLTFILPPLVLRSRILAKCFCRHLRSWALQGLKLLLGWSPS
Sbjct: 1 MHICASEVLTTGRASSRGAPLTFILPPLVLRSRILAKCFCRHLRSWALQGLKLLLGWSPS 60
Query: 61 SLSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQARAATGGVHPAGHPQA 120
SLSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQARAATGGVHPAGHPQA
Sbjct: 61 SLSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQARAATGGVHPAGHPQA 120
Query: 121 QGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQ 180
QGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQ
Sbjct: 121 QGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQ 180
Query: 181 HDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPGGRTGT 236
HDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPGGRTGT
Sbjct: 181 HDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPGGRTGT 236
>gi|239751298 PREDICTED: hypothetical protein XP_002347799 [Homo
sapiens]
Length = 236
Score = 484 bits (1246), Expect = e-137
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MHICASEVLTTGRASSRGAPLTFILPPLVLRSRILAKCFCRHLRSWALQGLKLLLGWSPS 60
MHICASEVLTTGRASSRGAPLTFILPPLVLRSRILAKCFCRHLRSWALQGLKLLLGWSPS
Sbjct: 1 MHICASEVLTTGRASSRGAPLTFILPPLVLRSRILAKCFCRHLRSWALQGLKLLLGWSPS 60
Query: 61 SLSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQARAATGGVHPAGHPQA 120
SLSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQARAATGGVHPAGHPQA
Sbjct: 61 SLSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQARAATGGVHPAGHPQA 120
Query: 121 QGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQ 180
QGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQ
Sbjct: 121 QGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQ 180
Query: 181 HDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPGGRTGT 236
HDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPGGRTGT
Sbjct: 181 HDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPGGRTGT 236
>gi|239745795 PREDICTED: hypothetical protein XP_002343591 [Homo
sapiens]
Length = 236
Score = 484 bits (1246), Expect = e-137
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MHICASEVLTTGRASSRGAPLTFILPPLVLRSRILAKCFCRHLRSWALQGLKLLLGWSPS 60
MHICASEVLTTGRASSRGAPLTFILPPLVLRSRILAKCFCRHLRSWALQGLKLLLGWSPS
Sbjct: 1 MHICASEVLTTGRASSRGAPLTFILPPLVLRSRILAKCFCRHLRSWALQGLKLLLGWSPS 60
Query: 61 SLSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQARAATGGVHPAGHPQA 120
SLSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQARAATGGVHPAGHPQA
Sbjct: 61 SLSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQARAATGGVHPAGHPQA 120
Query: 121 QGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQ 180
QGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQ
Sbjct: 121 QGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQ 180
Query: 181 HDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPGGRTGT 236
HDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPGGRTGT
Sbjct: 181 HDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPGGRTGT 236
>gi|110624765 POU domain, class 3, transcription factor 1 [Homo
sapiens]
Length = 451
Score = 48.1 bits (113), Expect = 6e-06
Identities = 43/123 (34%), Positives = 48/123 (39%), Gaps = 19/123 (15%)
Query: 110 GGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQ---------LLLGAGRAVDGFV 160
GG P HP A A+ A AAA H GAA R+ L GAG V
Sbjct: 17 GGTGPLMHPDAAAAAAAAAAAE------RLHAGAAYREVQKLMHHEWLGAGAGHPVGLAH 70
Query: 161 AQARP---GPGGQQQGG-HEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRS 216
Q P G GG GG H G+ TGR G GG R + AH G+AW
Sbjct: 71 PQWLPTGGGGGGDWAGGPHLEHGKAGGGGTGRADDGGGGGGFHARLVHQGAAHAGAAWAQ 130
Query: 217 WRT 219
T
Sbjct: 131 GST 133
>gi|239742988 PREDICTED: hypothetical protein [Homo sapiens]
Length = 470
Score = 45.1 bits (105), Expect = 5e-05
Identities = 48/146 (32%), Positives = 61/146 (41%), Gaps = 16/146 (10%)
Query: 98 SGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVD 157
+G +A A TG Q GA A AAA + H+ AH AAR+ L+ A
Sbjct: 305 AGHLAVGAAGLTGAHADLALAQLLGADAAAAAA-VQHE---AHARRAARRRLVRAPARPA 360
Query: 158 GFVAQAR--PGPGGQQQ--GGHEAEGQHDRP--RTGRGRGALGA----GGERGRAGERRR 207
+A R G GGQ++ G H G+ P + GA GA GE G+
Sbjct: 361 AVLADGRLQGGQGGQRRSVGAHALPGRPRVPPWQPPAAAGAPGAYPAAEGEEDHEGDADG 420
Query: 208 AH--GGSAWRSWRTRPGGRGETGRPG 231
AH GG W R+ G GE G G
Sbjct: 421 AHTGGGHGWHCGRSGGRGGGERGAAG 446
>gi|28875797 small protein rich in arginine and glycine [Homo
sapiens]
Length = 248
Score = 43.9 bits (102), Expect = 1e-04
Identities = 50/134 (37%), Positives = 56/134 (41%), Gaps = 20/134 (14%)
Query: 101 VAAQARAATGGVHPAGHPQAQGA--SGATAAARLSHQLLAAHGGAAAR-QLLLGAGRAVD 157
+ A AR A GG G P Q G R + LL GG + R Q LL GRAV
Sbjct: 92 IGALARGAIGG---RGLPIIQRGLPRGGLRGGRATRTLL--RGGMSLRGQNLLRGGRAVA 146
Query: 158 GFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRA-GERRRAHGGSAWRS 216
+ R G G+ G R G GRGA+G GG GR G R GG R
Sbjct: 147 PRMGLRRGGVRGRGGPG----------RGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRG 196
Query: 217 WRTRPGGRGETGRP 230
R R GRG RP
Sbjct: 197 -RGRGRGRGALARP 209
Score = 28.9 bits (63), Expect = 4.0
Identities = 23/78 (29%), Positives = 28/78 (35%), Gaps = 12/78 (15%)
Query: 170 QQQGGHEAEGQHDRPRTGRGRGALGA------------GGERGRAGERRRAHGGSAWRSW 217
Q+ G + + RP RGA+G GG RG R GG + R
Sbjct: 77 QRLGKSNIQARLGRPIGALARGAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQ 136
Query: 218 RTRPGGRGETGRPGGRTG 235
GGR R G R G
Sbjct: 137 NLLRGGRAVAPRMGLRRG 154
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 42.4 bits (98), Expect = 4e-04
Identities = 29/68 (42%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 166 GPGGQQQ-GGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGR 224
G G Q Q GG + G + R GRGRG G GG G G R + G R R GGR
Sbjct: 193 GYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEP----RGRGGGR 248
Query: 225 GETGRPGG 232
G G GG
Sbjct: 249 GGRGGMGG 256
Score = 35.8 bits (81), Expect = 0.033
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 166 GPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGG 211
GPGG G H G + R G GRG GG RGR G+R GG
Sbjct: 454 GPGGGPGGSHMG-GNYGDDRRG-GRGGYDRGGYRGRGGDRGGFRGG 497
Score = 34.3 bits (77), Expect = 0.096
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 153 GRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGS 212
G + G+ Q + G GG G + G R +G G G G G R G R GG
Sbjct: 188 GGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGRGGG 247
Query: 213 AWRSWRTRPGGRGETGRPG 231
R GG G + R G
Sbjct: 248 -----RGGRGGMGGSDRGG 261
Score = 31.6 bits (70), Expect = 0.62
Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 24/106 (22%)
Query: 153 GRAVDGFVAQARPGPGGQQQG-----------GHEAEGQHDRPRTGRGRGALGA------ 195
G+ G +Q +P GGQQQ G+ + Q++ G G G G
Sbjct: 123 GQPQSGSYSQ-QPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQDQ 181
Query: 196 ------GGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPGGRTG 235
GG G G + ++ GG + + GGRG G GG G
Sbjct: 182 SSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGG 227
Score = 30.8 bits (68), Expect = 1.1
Identities = 17/45 (37%), Positives = 19/45 (42%)
Query: 187 GRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPG 231
G GRG G GG GR G GG + + GG G R G
Sbjct: 380 GNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQQRAG 424
Score = 29.6 bits (65), Expect = 2.4
Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 110 GGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAA--RQLLLGAGRAVDGFVAQARPGP 167
GG G Q+ +SG + +Q + GG+ +Q G GR G G
Sbjct: 172 GGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSG-------GG 224
Query: 168 GGQQQGGHEAEGQHDRPRTGRGRGALGAGGERG 200
GG GG+ PR GRG G G GG G
Sbjct: 225 GGGGGGGYNRSSGGYEPR-GRGGGRGGRGGMGG 256
Score = 28.9 bits (63), Expect = 4.0
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 164 RPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRP 221
R G GG +GG+ G DR GRG GG+RG G + G + R RP
Sbjct: 473 RGGRGGYDRGGYRGRGG-DRGGFRGGRG----GGDRGGFGPGKMDSRGEHRQDRRERP 525
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 42.0 bits (97), Expect = 5e-04
Identities = 44/141 (31%), Positives = 50/141 (35%), Gaps = 23/141 (16%)
Query: 92 QGLLHPSGRVAAQARAATGGVH-PAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLL 150
QGL P G G PAG P AQG G Q + GAA +
Sbjct: 713 QGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGL--------QGMPGERGAAG----I 760
Query: 151 GAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHG 210
+ G V + P + GG G P G GA GE+G G A
Sbjct: 761 AGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPP------GPAGANGEKGEVGPPGPAGS 814
Query: 211 GSAWRSWRTRPGGRGETGRPG 231
A R PG RGETG PG
Sbjct: 815 AGA----RGAPGERGETGPPG 831
Score = 37.7 bits (86), Expect = 0.009
Identities = 51/168 (30%), Positives = 59/168 (35%), Gaps = 32/168 (19%)
Query: 92 QGLLHPSGRVAAQ-ARAATGGVHPAGHPQAQGASG-------------ATAAARLSHQLL 137
QG P+G + AR GGV P G P +GA G A L
Sbjct: 479 QGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGL 538
Query: 138 AAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQ--QGGHEAEGQHDR-----PRTGRGR 190
A GA G RPG G Q G A G+ R P+ RG+
Sbjct: 539 AGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQ 598
Query: 191 -------GALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPG 231
G GA GE G+AGE+ G R PG GETG G
Sbjct: 599 PGVMGFPGPKGANGEPGKAGEK----GLPGAPGLRGLPGKDGETGAAG 642
Score = 34.3 bits (77), Expect = 0.096
Identities = 40/141 (28%), Positives = 48/141 (34%), Gaps = 25/141 (17%)
Query: 105 ARAATGGVHPAGHPQAQGASGATAAARL--SHQLLAAHGGAAARQLLLGAG----RAVDG 158
AR G P G P G+ G A+ + + A G A A + G R G
Sbjct: 382 ARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPG 441
Query: 159 FVAQARP-GPGGQQ-----QGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGS 212
P GP GQ G +G P +GA G GE G+ G
Sbjct: 442 PQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGA-------- 493
Query: 213 AWRSWRTRPGGRGETGRPGGR 233
R PGG G G PG R
Sbjct: 494 -----RGEPGGVGPIGPPGER 509
Score = 33.5 bits (75), Expect = 0.16
Identities = 44/139 (31%), Positives = 55/139 (39%), Gaps = 19/139 (13%)
Query: 108 ATGGVHPAGHPQAQGASGATA--AARLSHQLLAAHG--GAAARQLLLGAGRAVDGFVAQA 163
A G P+G P QG +G T AR + A G GAA R +G +
Sbjct: 862 APGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGR---VGPPGSNGNPGPPG 918
Query: 164 RPGPGGQQQGGHEAEGQHDRP-RTGRG--RGALGAGGERGRAGERRRA--------HGGS 212
PGP G + G A G P R G +G G GE+G G+ + G +
Sbjct: 919 PPGPSG-KDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLA 977
Query: 213 AWRSWRTRPGGRGETGRPG 231
R PG RGE G PG
Sbjct: 978 GQRGIVGLPGQRGERGFPG 996
Score = 33.5 bits (75), Expect = 0.16
Identities = 46/151 (30%), Positives = 53/151 (35%), Gaps = 23/151 (15%)
Query: 97 PSGRVAAQ-ARAATGGVHPAGHPQAQGASG-------------ATAAARLSHQLLAAHGG 142
PSG+ + AR +G AG P QG +G + A Q LA G
Sbjct: 922 PSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRG 981
Query: 143 AAARQLLLGAGRAVDGFVAQARPGPGGQ--QQGGHEAEGQHDRPRTGRGRGALGAGGERG 200
L R GF PGP G+ +QG A G P G G GE G
Sbjct: 982 IVG----LPGQRGERGF--PGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPG 1035
Query: 201 RAGERRRAHGGSAWRSWRTRPGGRGETGRPG 231
R G A G G RGETG G
Sbjct: 1036 REGS-PGADGPPGRDGAAGVKGDRGETGAVG 1065
Score = 32.0 bits (71), Expect = 0.48
Identities = 40/143 (27%), Positives = 49/143 (34%), Gaps = 29/143 (20%)
Query: 108 ATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGP 167
A G P G P QGA+G L + G A + G Q PGP
Sbjct: 430 APGFPGPRGPPGPQGATGP-----LGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGP 484
Query: 168 GGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGER-----------------RRAHG 210
G++ G A G+ G G +G GERG G R R G
Sbjct: 485 AGEE-GKRGARGEPG------GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSG 537
Query: 211 GSAWRSWRTRPGGRGETGRPGGR 233
+ + PG GE G PG R
Sbjct: 538 LAGPKGANGDPGRPGEPGLPGAR 560
Score = 31.6 bits (70), Expect = 0.62
Identities = 44/149 (29%), Positives = 53/149 (35%), Gaps = 18/149 (12%)
Query: 91 VQGLLHPSGRVAAQARAATGGVHPA----GHPQAQGASGATAAARLSHQLLAAHGGAAAR 146
V G P G +A G+ A G P G +GA G A
Sbjct: 601 VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPP--------GPAGPAGE 652
Query: 147 QLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERR 206
+ GA GF Q PGP G G + G P G +G GERG GE R
Sbjct: 653 RGEQGAP-GPSGF--QGLPGPPGPPGEGGKP-GDQGVPGEAGAPGLVGPRGERGFPGE-R 707
Query: 207 RAHGGSAWRSWRTRPGGRGETGRPGGRTG 235
+ G + R PG G G P G +G
Sbjct: 708 GSPGAQGLQGPRGLPGTPGTDG-PKGASG 735
Score = 31.6 bits (70), Expect = 0.62
Identities = 41/153 (26%), Positives = 53/153 (34%), Gaps = 26/153 (16%)
Query: 85 LPVHQCVQGLLHPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAA 144
+P + G+ P G R G P G P G G T + G A
Sbjct: 751 MPGERGAAGIAGPKGD-----RGDVGEKGPEGAPGKDGGRGLTGP-------IGPPGPAG 798
Query: 145 ARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGE 204
A G A AR PG + + G P G+ GA GE+G AG+
Sbjct: 799 ANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQP--GAKGEQGEAGQ 856
Query: 205 RRRAHGGSAWRSWRTRPGGRGETGRPG--GRTG 235
+ A PG +G +G PG G TG
Sbjct: 857 KGDAGA----------PGPQGPSGAPGPQGPTG 879
Score = 30.0 bits (66), Expect = 1.8
Identities = 40/140 (28%), Positives = 45/140 (32%), Gaps = 21/140 (15%)
Query: 92 QGLLHPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLG 151
QG + PSG A AR G P G G G L H G Q L G
Sbjct: 1094 QGPMGPSG--PAGARGIQGPQGPRGDKGEAGEPGERG--------LKGHRGFTGLQGLPG 1143
Query: 152 AGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGG 211
A GP G + G G + G +G G RGR+GE A
Sbjct: 1144 PPGPSGDQGASGPAGPSGPR-GPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPA--- 1199
Query: 212 SAWRSWRTRPGGRGETGRPG 231
PG G G PG
Sbjct: 1200 -------GPPGNPGPPGPPG 1212
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 42.0 bits (97), Expect = 5e-04
Identities = 44/141 (31%), Positives = 50/141 (35%), Gaps = 23/141 (16%)
Query: 92 QGLLHPSGRVAAQARAATGGVH-PAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLL 150
QGL P G G PAG P AQG G Q + GAA +
Sbjct: 644 QGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGL--------QGMPGERGAAG----I 691
Query: 151 GAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHG 210
+ G V + P + GG G P G GA GE+G G A
Sbjct: 692 AGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPP------GPAGANGEKGEVGPPGPAGS 745
Query: 211 GSAWRSWRTRPGGRGETGRPG 231
A R PG RGETG PG
Sbjct: 746 AGA----RGAPGERGETGPPG 762
Score = 37.7 bits (86), Expect = 0.009
Identities = 51/168 (30%), Positives = 59/168 (35%), Gaps = 32/168 (19%)
Query: 92 QGLLHPSGRVAAQ-ARAATGGVHPAGHPQAQGASG-------------ATAAARLSHQLL 137
QG P+G + AR GGV P G P +GA G A L
Sbjct: 410 QGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGL 469
Query: 138 AAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQ--QGGHEAEGQHDR-----PRTGRGR 190
A GA G RPG G Q G A G+ R P+ RG+
Sbjct: 470 AGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQ 529
Query: 191 -------GALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPG 231
G GA GE G+AGE+ G R PG GETG G
Sbjct: 530 PGVMGFPGPKGANGEPGKAGEK----GLPGAPGLRGLPGKDGETGAAG 573
Score = 34.3 bits (77), Expect = 0.096
Identities = 40/141 (28%), Positives = 48/141 (34%), Gaps = 25/141 (17%)
Query: 105 ARAATGGVHPAGHPQAQGASGATAAARL--SHQLLAAHGGAAARQLLLGAG----RAVDG 158
AR G P G P G+ G A+ + + A G A A + G R G
Sbjct: 313 ARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPG 372
Query: 159 FVAQARP-GPGGQQ-----QGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGS 212
P GP GQ G +G P +GA G GE G+ G
Sbjct: 373 PQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGA-------- 424
Query: 213 AWRSWRTRPGGRGETGRPGGR 233
R PGG G G PG R
Sbjct: 425 -----RGEPGGVGPIGPPGER 440
Score = 33.5 bits (75), Expect = 0.16
Identities = 44/139 (31%), Positives = 55/139 (39%), Gaps = 19/139 (13%)
Query: 108 ATGGVHPAGHPQAQGASGATA--AARLSHQLLAAHG--GAAARQLLLGAGRAVDGFVAQA 163
A G P+G P QG +G T AR + A G GAA R +G +
Sbjct: 793 APGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGR---VGPPGSNGNPGPPG 849
Query: 164 RPGPGGQQQGGHEAEGQHDRP-RTGRG--RGALGAGGERGRAGERRRA--------HGGS 212
PGP G + G A G P R G +G G GE+G G+ + G +
Sbjct: 850 PPGPSG-KDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLA 908
Query: 213 AWRSWRTRPGGRGETGRPG 231
R PG RGE G PG
Sbjct: 909 GQRGIVGLPGQRGERGFPG 927
Score = 33.5 bits (75), Expect = 0.16
Identities = 46/151 (30%), Positives = 53/151 (35%), Gaps = 23/151 (15%)
Query: 97 PSGRVAAQ-ARAATGGVHPAGHPQAQGASG-------------ATAAARLSHQLLAAHGG 142
PSG+ + AR +G AG P QG +G + A Q LA G
Sbjct: 853 PSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRG 912
Query: 143 AAARQLLLGAGRAVDGFVAQARPGPGGQ--QQGGHEAEGQHDRPRTGRGRGALGAGGERG 200
L R GF PGP G+ +QG A G P G G GE G
Sbjct: 913 IVG----LPGQRGERGF--PGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPG 966
Query: 201 RAGERRRAHGGSAWRSWRTRPGGRGETGRPG 231
R G A G G RGETG G
Sbjct: 967 REGS-PGADGPPGRDGAAGVKGDRGETGAVG 996
Score = 32.0 bits (71), Expect = 0.48
Identities = 40/143 (27%), Positives = 49/143 (34%), Gaps = 29/143 (20%)
Query: 108 ATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGP 167
A G P G P QGA+G L + G A + G Q PGP
Sbjct: 361 APGFPGPRGPPGPQGATGP-----LGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGP 415
Query: 168 GGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGER-----------------RRAHG 210
G++ G A G+ G G +G GERG G R R G
Sbjct: 416 AGEE-GKRGARGEPG------GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSG 468
Query: 211 GSAWRSWRTRPGGRGETGRPGGR 233
+ + PG GE G PG R
Sbjct: 469 LAGPKGANGDPGRPGEPGLPGAR 491
Score = 31.6 bits (70), Expect = 0.62
Identities = 44/149 (29%), Positives = 53/149 (35%), Gaps = 18/149 (12%)
Query: 91 VQGLLHPSGRVAAQARAATGGVHPA----GHPQAQGASGATAAARLSHQLLAAHGGAAAR 146
V G P G +A G+ A G P G +GA G A
Sbjct: 532 VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPP--------GPAGPAGE 583
Query: 147 QLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERR 206
+ GA GF Q PGP G G + G P G +G GERG GE R
Sbjct: 584 RGEQGAP-GPSGF--QGLPGPPGPPGEGGKP-GDQGVPGEAGAPGLVGPRGERGFPGE-R 638
Query: 207 RAHGGSAWRSWRTRPGGRGETGRPGGRTG 235
+ G + R PG G G P G +G
Sbjct: 639 GSPGAQGLQGPRGLPGTPGTDG-PKGASG 666
Score = 31.6 bits (70), Expect = 0.62
Identities = 41/153 (26%), Positives = 53/153 (34%), Gaps = 26/153 (16%)
Query: 85 LPVHQCVQGLLHPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAA 144
+P + G+ P G R G P G P G G T + G A
Sbjct: 682 MPGERGAAGIAGPKGD-----RGDVGEKGPEGAPGKDGGRGLTGP-------IGPPGPAG 729
Query: 145 ARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGE 204
A G A AR PG + + G P G+ GA GE+G AG+
Sbjct: 730 ANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQP--GAKGEQGEAGQ 787
Query: 205 RRRAHGGSAWRSWRTRPGGRGETGRPG--GRTG 235
+ A PG +G +G PG G TG
Sbjct: 788 KGDAGA----------PGPQGPSGAPGPQGPTG 810
Score = 30.0 bits (66), Expect = 1.8
Identities = 40/140 (28%), Positives = 45/140 (32%), Gaps = 21/140 (15%)
Query: 92 QGLLHPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLG 151
QG + PSG A AR G P G G G L H G Q L G
Sbjct: 1025 QGPMGPSG--PAGARGIQGPQGPRGDKGEAGEPGERG--------LKGHRGFTGLQGLPG 1074
Query: 152 AGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGG 211
A GP G + G G + G +G G RGR+GE A
Sbjct: 1075 PPGPSGDQGASGPAGPSGPR-GPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPA--- 1130
Query: 212 SAWRSWRTRPGGRGETGRPG 231
PG G G PG
Sbjct: 1131 -------GPPGNPGPPGPPG 1143
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 42.0 bits (97), Expect = 5e-04
Identities = 42/128 (32%), Positives = 55/128 (42%), Gaps = 16/128 (12%)
Query: 109 TGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQL--LLGAGRAVDGFVAQARPG 166
+G V P G+P A G +GA AA L + A G R + +GA A PG
Sbjct: 291 SGPVGPPGNPGANGLTGAKGAAGLP-GVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPG 349
Query: 167 PGGQQ-QGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRG 225
P G + + G++ E P + +G G GE G+ G A GSA PG G
Sbjct: 350 PAGSKGESGNKGE-----PGSAGPQGPPGPSGEEGKRGPNGEA--GSA-----GPPGPPG 397
Query: 226 ETGRPGGR 233
G PG R
Sbjct: 398 LRGSPGSR 405
Score = 36.2 bits (82), Expect = 0.025
Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 165 PGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGR 224
PGP G G Q+D G G G +G G RG G A G ++ PG
Sbjct: 65 PGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPPG-AAGAPGPQGFQGPAGEPGEP 123
Query: 225 GETGRPGGR 233
G+TG G R
Sbjct: 124 GQTGPAGAR 132
Score = 34.7 bits (78), Expect = 0.073
Identities = 44/146 (30%), Positives = 53/146 (36%), Gaps = 17/146 (11%)
Query: 93 GLLHPSGRV-AAQARAATGGVHPAGHPQAQGASG-ATAAARLSHQLLAAHGGAAARQLLL 150
GL+ P G AA A G PAG P G +G A A A G +
Sbjct: 94 GLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRP 153
Query: 151 GAGRAVDGFVAQARPG----PGGQQQGGHEA-EGQHDRPRTGRGRGALGAGGERGRAGER 205
G V A+ PG PG + GH +G +P +G GA GE G G+
Sbjct: 154 GERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQT 213
Query: 206 RRAHGGSAWRSWRTRPGGRGETGRPG 231
R PG RG G PG
Sbjct: 214 GA----------RGLPGERGRVGAPG 229
Score = 34.7 bits (78), Expect = 0.073
Identities = 46/158 (29%), Positives = 52/158 (32%), Gaps = 24/158 (15%)
Query: 92 QGLLHPSGRVAAQARAATGGVH-------PAGHPQAQGASGATAAA--------RLSHQL 136
+G P G AQ GV P G P QG G + A R H
Sbjct: 519 RGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGE 578
Query: 137 LAAHGGAAARQLLLGAGRAVDGFVAQARP-GPGGQQ--QGGHEAEGQHDRPRTGRGRGAL 193
G A R R G A P GP G + G +G P G
Sbjct: 579 FGLPGPAGPR-----GERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTA 633
Query: 194 GAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPG 231
G G G GER A G + + PG RGE G PG
Sbjct: 634 GPSGPSGLPGERGAA-GIPGGKGEKGEPGLRGEIGNPG 670
Score = 34.3 bits (77), Expect = 0.096
Identities = 47/171 (27%), Positives = 62/171 (36%), Gaps = 28/171 (16%)
Query: 92 QGLLHPSGRVAAQARAATGGVH-------PAGHPQAQGASGATAAARLSHQLLA------ 138
QGL PSG + G+H PAG +G G + AA + + +
Sbjct: 555 QGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGP 614
Query: 139 -AHGGAAARQLLLGAGRAVDGFVAQARPG-------PGGQQQGGHEA-EGQHDRPRTGRG 189
G ++GA PG PGG+ + G G+ P
Sbjct: 615 PGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGA 674
Query: 190 RGA---LGAGGERGRAGERRR--AHGGSAWRSWRTRPGGRGETGRPGGRTG 235
RGA +GA G G G+R A G + R PG RGE G P G G
Sbjct: 675 RGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVG-PAGPNG 724
Score = 33.9 bits (76), Expect = 0.13
Identities = 44/157 (28%), Positives = 55/157 (35%), Gaps = 22/157 (14%)
Query: 86 PVHQCVQGLLHPSGRVAAQARAATGGVH-PAGHPQAQGASGATAAARLSHQLLAAHGGAA 144
P + GL G A G+ P G P GA+GAT A + L G A
Sbjct: 297 PGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGA-----RGLVGEPGPA 351
Query: 145 ARQLLLGAGRAVDGFVAQARPGPGGQQ-----QGGHEAEGQHDRPRTGRGRGALGAGGER 199
+ G Q PGP G++ G + G P G+ G G
Sbjct: 352 GSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGAD 411
Query: 200 GRAG-----ERRRAHGGSAWRSWRTRPGGRGETGRPG 231
GRAG R A G + R G G+ GRPG
Sbjct: 412 GRAGVMGPPGSRGASGPAGVR------GPNGDAGRPG 442
Score = 31.6 bits (70), Expect = 0.62
Identities = 41/134 (30%), Positives = 46/134 (34%), Gaps = 24/134 (17%)
Query: 98 SGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVD 157
+G A T G P G P QG GA +L G R L AG
Sbjct: 843 AGEKGPSGEAGTAG--PPGTPGPQGLLGAPG-------ILGLPGSRGERGLPGVAG---- 889
Query: 158 GFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSW 217
A PGP G G P G GA GE GR G + G R
Sbjct: 890 ---AVGEPGPLGIAG----PPGARGPPGAVGSPGVNGAPGEAGRDGNP--GNDGPPGRDG 940
Query: 218 RTRPGGRGETGRPG 231
+ PG +GE G PG
Sbjct: 941 Q--PGHKGERGYPG 952
Score = 31.2 bits (69), Expect = 0.81
Identities = 41/149 (27%), Positives = 54/149 (36%), Gaps = 23/149 (15%)
Query: 93 GLLHPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGA 152
G++ P+G V A A G P G ++G G + GAA R G
Sbjct: 751 GVVGPTGPVGAAGPAGPNG--PPGPAGSRGDGGPPG--------MTGFPGAAGRTGPPGP 800
Query: 153 GRAVDGFVAQARPGPGGQQ--QGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRA-- 208
+ G PGP G++ +G +G R G G GE+G +GE A
Sbjct: 801 S-GISG--PPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGP 857
Query: 209 ------HGGSAWRSWRTRPGGRGETGRPG 231
G PG RGE G PG
Sbjct: 858 PGTPGPQGLLGAPGILGLPGSRGERGLPG 886
>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
Length = 2263
Score = 42.0 bits (97), Expect = 5e-04
Identities = 42/146 (28%), Positives = 54/146 (36%), Gaps = 12/146 (8%)
Query: 97 PSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQL-LAAHGGAAARQLLLGAGRA 155
P G ++ + A G GH QG +G L L L G + G
Sbjct: 1541 PPGTPGSRRKTAAHGRR--GHTGPQGTAGIPGPDGLEGSLGLKGPQGPRGEAGVKGEKGG 1598
Query: 156 VDGFVAQARPGPGGQ--QQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSA 213
V Q PGPGG+ QG ++G P +GA+G G RG G GS
Sbjct: 1599 VGSKGPQGPPGPGGEAGNQGRLGSQGNKGEPGDLGEKGAVGFPGPRGLQGNDGSPGYGSV 1658
Query: 214 WR-------SWRTRPGGRGETGRPGG 232
R + G +GE G PGG
Sbjct: 1659 GRKGAKGQEGFPGESGPKGEIGDPGG 1684
Score = 33.5 bits (75), Expect = 0.16
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 165 PGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGR 224
PG G++ G ++G + T RGA G G+ G G G + + R R G R
Sbjct: 1478 PGRKGEK-GDEGSQGSPGKRGTPGDRGAKGLRGDPGAPGVDSSIEGPTGLKGERGRQGRR 1536
Query: 225 GETGRPG 231
G G PG
Sbjct: 1537 GWPGPPG 1543
>gi|169208819 PREDICTED: similar to kinase D-interacting substrate
220 [Homo sapiens]
Length = 380
Score = 41.6 bits (96), Expect = 6e-04
Identities = 55/173 (31%), Positives = 66/173 (38%), Gaps = 29/173 (16%)
Query: 62 LSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQARA-ATGGVHPAGHPQA 120
L + R +A L L L H CVQ L P GR AA A A + P G P
Sbjct: 145 LRLDRTNRAGLTALQLAAARGHGT----CVQALTGPWGRAAAAAAARGSNSDSPPGRP-- 198
Query: 121 QGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQ 180
AA H+ + R LL RA G +A G G+ G H A+G
Sbjct: 199 ------APAASPEHRRPSPR--RLPRPLLARFARAAGGHGGEA--GSAGKNSGRHRAQGS 248
Query: 181 HDRPRTGRGRG-ALGAGGE----RGRAG------ERRRAHGGSAWRSWRTRPG 222
+RP GR ALGA E R RAG ++ G WRS G
Sbjct: 249 -ERPELGRSMSLALGAVTEEEAARLRAGALMALPNSPQSSGTGRWRSQEVLEG 300
>gi|169208593 PREDICTED: similar to kinase D-interacting substrate
220 [Homo sapiens]
Length = 380
Score = 41.6 bits (96), Expect = 6e-04
Identities = 55/173 (31%), Positives = 66/173 (38%), Gaps = 29/173 (16%)
Query: 62 LSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQARA-ATGGVHPAGHPQA 120
L + R +A L L L H CVQ L P GR AA A A + P G P
Sbjct: 145 LRLDRTNRAGLTALQLAAARGHGT----CVQALTGPWGRAAAAAAARGSNSDSPPGRP-- 198
Query: 121 QGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQ 180
AA H+ + R LL RA G +A G G+ G H A+G
Sbjct: 199 ------APAASPEHRRPSPR--RLPRPLLARFARAAGGHGGEA--GSAGKNSGRHRAQGS 248
Query: 181 HDRPRTGRGRG-ALGAGGE----RGRAG------ERRRAHGGSAWRSWRTRPG 222
+RP GR ALGA E R RAG ++ G WRS G
Sbjct: 249 -ERPELGRSMSLALGAVTEEEAARLRAGALMALPNSPQSSGTGRWRSQEVLEG 300
>gi|169168886 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 41.6 bits (96), Expect = 6e-04
Identities = 49/146 (33%), Positives = 61/146 (41%), Gaps = 18/146 (12%)
Query: 98 SGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVD 157
+G A A A G A Q GA A AAA + H+ AH AAR+ L+ A
Sbjct: 115 AGLTGAHADLAVG--RGAELAQLLGADAAAAAA-VQHE---AHARRAARRRLVRAPARPA 168
Query: 158 GFVAQAR--PGPGGQQQ--GGHEAEGQHDRP--RTGRGRGALGA----GGERGRAGERRR 207
+A R G GGQ++ G H G+ P + GA GA GE G+
Sbjct: 169 AVLADGRLQGGQGGQRRSVGAHALPGRPRVPPWQPPAAAGAPGAYPAAEGEEDHEGDADG 228
Query: 208 AH--GGSAWRSWRTRPGGRGETGRPG 231
AH GG W R+ G GE G G
Sbjct: 229 AHTGGGHGWHCGRSGGRGGGERGAAG 254
>gi|169208169 PREDICTED: similar to kinase D-interacting substrate
220 [Homo sapiens]
Length = 380
Score = 41.6 bits (96), Expect = 6e-04
Identities = 55/173 (31%), Positives = 66/173 (38%), Gaps = 29/173 (16%)
Query: 62 LSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQARA-ATGGVHPAGHPQA 120
L + R +A L L L H CVQ L P GR AA A A + P G P
Sbjct: 145 LRLDRTNRAGLTALQLAAARGHGT----CVQALTGPWGRAAAAAAARGSNSDSPPGRP-- 198
Query: 121 QGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQ 180
AA H+ + R LL RA G +A G G+ G H A+G
Sbjct: 199 ------APAASPEHRRPSPR--RLPRPLLARFARAAGGHGGEA--GSAGKNSGRHRAQGS 248
Query: 181 HDRPRTGRGRG-ALGAGGE----RGRAG------ERRRAHGGSAWRSWRTRPG 222
+RP GR ALGA E R RAG ++ G WRS G
Sbjct: 249 -ERPELGRSMSLALGAVTEEEAARLRAGALMALPNSPQSSGTGRWRSQEVLEG 300
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 41.2 bits (95), Expect = 8e-04
Identities = 40/136 (29%), Positives = 44/136 (32%), Gaps = 24/136 (17%)
Query: 106 RAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARP 165
R A GG G P +G G H+ GG G G + +
Sbjct: 723 RGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGG--------GMGNSSGH---RPHE 771
Query: 166 GPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRG 225
GPGG GH RP G G G GG R G GGS R GG G
Sbjct: 772 GPGGGMGSGH-------RPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMG 824
Query: 226 ETG------RPGGRTG 235
G PGG G
Sbjct: 825 AGGGHRPHEGPGGSMG 840
Score = 37.4 bits (85), Expect = 0.011
Identities = 39/124 (31%), Positives = 48/124 (38%), Gaps = 13/124 (10%)
Query: 110 GGV-HPAGHPQAQGASGATAAARLSHQLLAAH-GGAAARQLLLGAGRAVDGFVAQARP-- 165
GG+ + +GH +G G + H+ GG + G G + G RP
Sbjct: 759 GGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGH-RPHE 817
Query: 166 GPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRG 225
GPGG G A G H RP G G G+GG R G HGG PG RG
Sbjct: 818 GPGG----GMGAGGGH-RPHEGPGGSMGGSGGHRPHEGP---GHGGPHGHRPHDVPGHRG 869
Query: 226 ETGR 229
R
Sbjct: 870 HDHR 873
Score = 33.5 bits (75), Expect = 0.16
Identities = 42/157 (26%), Positives = 50/157 (31%), Gaps = 43/157 (27%)
Query: 114 PAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGF----------VAQA 163
P HP + + ++ Q+L HG LLG G +GF +
Sbjct: 592 PNSHPSEELLKQPDYSDKIK-QMLVPHG-------LLGPGPIANGFPPGGPGGPKGMQHF 643
Query: 164 RPGPGGQQQGGHEAEGQHDRPR---------------TGRG---RGALGAGGERGRAGER 205
PGPGG G H G PR G G RG GG G
Sbjct: 644 PPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPY 703
Query: 206 RRAHGGSAWRS-------WRTRPGGRGETGRPGGRTG 235
R GG +R GGR G P GR G
Sbjct: 704 HRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGG 740
Score = 29.3 bits (64), Expect = 3.1
Identities = 40/152 (26%), Positives = 45/152 (29%), Gaps = 33/152 (21%)
Query: 110 GGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPG- 168
GG P H G G RL GG G G + G + PGPG
Sbjct: 648 GGPMPGPH----GGPGGPVGPRLLGPPPPPRGGDPFWD---GPGDPMRGGPMRGGPGPGP 700
Query: 169 GQQQGGHEAEGQHDRP---------------------RTGRGRGALGAGGERGRAGERRR 207
G G G ++ P R G G G +G GG R G
Sbjct: 701 GPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGG 760
Query: 208 AHGGSAWRSWRTRPGGRGETGR----PGGRTG 235
S R GG G R PGG G
Sbjct: 761 MGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMG 792
>gi|239743123 PREDICTED: hypothetical protein [Homo sapiens]
Length = 123
Score = 41.2 bits (95), Expect = 8e-04
Identities = 36/113 (31%), Positives = 45/113 (39%), Gaps = 14/113 (12%)
Query: 96 HPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAH-----GGAAARQLLL 150
H G A A GG AG + + SG R Q A GAAAR L
Sbjct: 18 HKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADAL 77
Query: 151 GAGRAVDGFVAQARPGPGGQ--QQGGHEAEGQHDRPRTGRGRGALGAGGERGR 201
AG++ A P PGG+ ++G A + GRG GA + GE R
Sbjct: 78 TAGKS-------AEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEPER 123
>gi|169194607 PREDICTED: hypothetical protein [Homo sapiens]
Length = 436
Score = 40.8 bits (94), Expect = 0.001
Identities = 42/142 (29%), Positives = 51/142 (35%), Gaps = 19/142 (13%)
Query: 98 SGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVD 157
+G+ +AR G GHP +GA+G A +A R+ G A
Sbjct: 256 AGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPE--------SSADRR---GCDCAAW 304
Query: 158 GFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGG--------ERGRAGERRRAH 209
G P G+ GH D P T RG G G + G A RA
Sbjct: 305 GVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAE 364
Query: 210 GGSAWRSWRTRPGGRGETGRPG 231
SA RS RP GR G PG
Sbjct: 365 AVSAARSDAPRPKGREIRGEPG 386
Score = 27.7 bits (60), Expect = 9.0
Identities = 26/90 (28%), Positives = 29/90 (32%), Gaps = 5/90 (5%)
Query: 142 GAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGR 201
G R+LL R A R GG+ GG G R R R +
Sbjct: 193 GRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPP--- 249
Query: 202 AGERRRAHGGSAWRSWRTRPGGRGETGRPG 231
RRR G R RT G G PG
Sbjct: 250 --PRRRRRAGQTHRRARTEVAGNVHVGHPG 277
>gi|169201944 PREDICTED: hypothetical protein [Homo sapiens]
Length = 436
Score = 40.8 bits (94), Expect = 0.001
Identities = 42/142 (29%), Positives = 51/142 (35%), Gaps = 19/142 (13%)
Query: 98 SGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVD 157
+G+ +AR G GHP +GA+G A +A R+ G A
Sbjct: 256 AGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPE--------SSADRR---GCDCAAW 304
Query: 158 GFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGG--------ERGRAGERRRAH 209
G P G+ GH D P T RG G G + G A RA
Sbjct: 305 GVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAE 364
Query: 210 GGSAWRSWRTRPGGRGETGRPG 231
SA RS RP GR G PG
Sbjct: 365 AVSAARSDAPRPKGREIRGEPG 386
Score = 27.7 bits (60), Expect = 9.0
Identities = 26/90 (28%), Positives = 29/90 (32%), Gaps = 5/90 (5%)
Query: 142 GAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGR 201
G R+LL R A R GG+ GG G R R R +
Sbjct: 193 GRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPP--- 249
Query: 202 AGERRRAHGGSAWRSWRTRPGGRGETGRPG 231
RRR G R RT G G PG
Sbjct: 250 --PRRRRRAGQTHRRARTEVAGNVHVGHPG 277
>gi|169192119 PREDICTED: hypothetical protein [Homo sapiens]
Length = 436
Score = 40.8 bits (94), Expect = 0.001
Identities = 42/142 (29%), Positives = 51/142 (35%), Gaps = 19/142 (13%)
Query: 98 SGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVD 157
+G+ +AR G GHP +GA+G A +A R+ G A
Sbjct: 256 AGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPE--------SSADRR---GCDCAAW 304
Query: 158 GFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGG--------ERGRAGERRRAH 209
G P G+ GH D P T RG G G + G A RA
Sbjct: 305 GVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAE 364
Query: 210 GGSAWRSWRTRPGGRGETGRPG 231
SA RS RP GR G PG
Sbjct: 365 AVSAARSDAPRPKGREIRGEPG 386
Score = 27.7 bits (60), Expect = 9.0
Identities = 26/90 (28%), Positives = 29/90 (32%), Gaps = 5/90 (5%)
Query: 142 GAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGR 201
G R+LL R A R GG+ GG G R R R +
Sbjct: 193 GRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPP--- 249
Query: 202 AGERRRAHGGSAWRSWRTRPGGRGETGRPG 231
RRR G R RT G G PG
Sbjct: 250 --PRRRRRAGQTHRRARTEVAGNVHVGHPG 277
>gi|10864053 myozenin 1 [Homo sapiens]
Length = 299
Score = 40.0 bits (92), Expect = 0.002
Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 14/79 (17%)
Query: 153 GRAVDGFVAQARPGPGGQQQGGHEAEGQH---DRPRTGRGRGALGAGGERGRAGERRRAH 209
G A GF G GG Q GG + GQ+ + G G GA G GG G+AG
Sbjct: 99 GTAGQGFSYSKSNGRGGSQAGGSGSAGQYGSDQQHHLGSGSGAGGTGGPAGQAG-----R 153
Query: 210 GGSAWRSWRTRPGGRGETG 228
GG+A + G GETG
Sbjct: 154 GGAAGTA------GVGETG 166
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 38.9 bits (89), Expect = 0.004
Identities = 36/134 (26%), Positives = 47/134 (35%), Gaps = 18/134 (13%)
Query: 114 PAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQ----------- 162
P G P GA G L +GG ++ + A A + Q
Sbjct: 485 PPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPG 544
Query: 163 -----ARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSW 217
RPGP G G A+G+ P RG G G G+ G+R R G R
Sbjct: 545 PMGLTGRPGPVGGP-GSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRP-GADGGRGM 602
Query: 218 RTRPGGRGETGRPG 231
PG +G+ G G
Sbjct: 603 PGEPGAKGDRGFDG 616
Score = 35.8 bits (81), Expect = 0.033
Identities = 46/161 (28%), Positives = 62/161 (38%), Gaps = 27/161 (16%)
Query: 92 QGLLHPSGRVAAQARAATGGVH----PAGHPQAQGASGATAA-------ARLSHQLLAAH 140
QG + P G Q + G+ P GHP +G SG A + +
Sbjct: 717 QGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGV 776
Query: 141 GGAAARQLLLGA--GRAVDGFVAQARPGPGGQQ--QGGHEAEGQ-----HDRPRTGRGR- 190
GA + L G+ + DGF PG G +G GQ D P +GR
Sbjct: 777 KGADGVRGLKGSKGEKGEDGF-----PGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRA 831
Query: 191 GALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPG 231
G G G G+AGE+ + G + R G +G TG PG
Sbjct: 832 GPTGDPGPSGQAGEKGKL-GVPGLPGYPGRQGPKGSTGFPG 871
Score = 33.5 bits (75), Expect = 0.16
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 16/83 (19%)
Query: 165 PGPGGQQQ-GGHEAE-------------GQHDRPRTGRGRGALGAGGERGRAGER-RRAH 209
PGP GQ GG + E G+ P RG GA G GR GE+ +
Sbjct: 1335 PGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGE 1394
Query: 210 GGSAWRSWRTRP-GGRGETGRPG 231
G+ +T P G +G G+PG
Sbjct: 1395 AGAEGPPGKTGPVGPQGPAGKPG 1417
Score = 32.0 bits (71), Expect = 0.48
Identities = 35/125 (28%), Positives = 42/125 (33%), Gaps = 20/125 (16%)
Query: 109 TGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPG 168
+G P G P +G GA GA RQ GA + GP
Sbjct: 1362 SGEAGPPGPPGKRGPPGAA--------------GAEGRQGEKGAKGEAGAEGPPGKTGPV 1407
Query: 169 GQQ--QGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGE 226
G Q G EG P +G GA G+ G G G + PG +GE
Sbjct: 1408 GPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPM----GPPGLPGLKGDPGSKGE 1463
Query: 227 TGRPG 231
G PG
Sbjct: 1464 KGHPG 1468
Score = 30.4 bits (67), Expect = 1.4
Identities = 37/134 (27%), Positives = 45/134 (33%), Gaps = 29/134 (21%)
Query: 106 RAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARP 165
R + G P G P +G SG G + G V + P
Sbjct: 900 RGSRGARGPTGKPGPKGTSGGDGPP-----------GPPGERGPQGPQGPVGFPGPKGPP 948
Query: 166 GPGGQ--------QQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSW 217
GP G+ Q+G +G+ P G G G GE G GE R H G
Sbjct: 949 GPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGE--RGHPGP----- 1001
Query: 218 RTRPGGRGETGRPG 231
PG GE G PG
Sbjct: 1002 ---PGPPGEQGLPG 1012
Score = 30.4 bits (67), Expect = 1.4
Identities = 43/151 (28%), Positives = 51/151 (33%), Gaps = 18/151 (11%)
Query: 96 HPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRA 155
HP R + TG P G QG +G T + + G Q L GA
Sbjct: 959 HPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGP--IGERGHPGPPGPPGEQGLPGAA-G 1015
Query: 156 VDGFVAQARPGPGGQQ-----------QGGHEAEGQHDRPRTGRGRGALGAGGERGRAGE 204
+G A+ PGP G G G P G G G G G GE
Sbjct: 1016 KEG--AKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGE 1073
Query: 205 RRRAHGGSAWRSWRTRPGGRGETGRPGGRTG 235
R A G + RPG +G G P G G
Sbjct: 1074 RGSA-GTAGPIGLPGRPGPQGPPG-PAGEKG 1102
Score = 30.0 bits (66), Expect = 1.8
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 24/84 (28%)
Query: 165 PGPGGQ-----------------QQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRR 207
PGP GQ +QG + G P +GA G G+ G G+R
Sbjct: 837 PGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQR-- 894
Query: 208 AHGGSAWRSWRTRPGGRGETGRPG 231
G + R R G RG TG+PG
Sbjct: 895 --GPTGPRGSR---GARGPTGKPG 913
Score = 30.0 bits (66), Expect = 1.8
Identities = 37/143 (25%), Positives = 46/143 (32%), Gaps = 34/143 (23%)
Query: 91 VQGLLHPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLL 150
+QGL P G + G V P G P G G GA Q
Sbjct: 1211 LQGLPGPPGE-----KGENGDVGPMGPPGPPGPRGPQGP-----------NGADGPQGPP 1254
Query: 151 GAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRA-- 208
G+ +V G + PG G EA G GG +G GE+ A
Sbjct: 1255 GSVGSVGGVGEKGEPGEAGNPGPPGEA----------------GVGGPKGERGEKGEAGP 1298
Query: 209 HGGSAWRSWRTRPGGRGETGRPG 231
G + + PG G G PG
Sbjct: 1299 PGAAGPPGAKGPPGDDGPKGNPG 1321
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 38.9 bits (89), Expect = 0.004
Identities = 36/134 (26%), Positives = 47/134 (35%), Gaps = 18/134 (13%)
Query: 114 PAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQ----------- 162
P G P GA G L +GG ++ + A A + Q
Sbjct: 434 PPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPG 493
Query: 163 -----ARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSW 217
RPGP G G A+G+ P RG G G G+ G+R R G R
Sbjct: 494 PMGLTGRPGPVGGP-GSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRP-GADGGRGM 551
Query: 218 RTRPGGRGETGRPG 231
PG +G+ G G
Sbjct: 552 PGEPGAKGDRGFDG 565
Score = 35.8 bits (81), Expect = 0.033
Identities = 46/161 (28%), Positives = 62/161 (38%), Gaps = 27/161 (16%)
Query: 92 QGLLHPSGRVAAQARAATGGVH----PAGHPQAQGASGATAA-------ARLSHQLLAAH 140
QG + P G Q + G+ P GHP +G SG A + +
Sbjct: 666 QGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGV 725
Query: 141 GGAAARQLLLGA--GRAVDGFVAQARPGPGGQQ--QGGHEAEGQ-----HDRPRTGRGR- 190
GA + L G+ + DGF PG G +G GQ D P +GR
Sbjct: 726 KGADGVRGLKGSKGEKGEDGF-----PGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRA 780
Query: 191 GALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPG 231
G G G G+AGE+ + G + R G +G TG PG
Sbjct: 781 GPTGDPGPSGQAGEKGKL-GVPGLPGYPGRQGPKGSTGFPG 820
Score = 33.5 bits (75), Expect = 0.16
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 16/83 (19%)
Query: 165 PGPGGQQQ-GGHEAE-------------GQHDRPRTGRGRGALGAGGERGRAGER-RRAH 209
PGP GQ GG + E G+ P RG GA G GR GE+ +
Sbjct: 1284 PGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGE 1343
Query: 210 GGSAWRSWRTRP-GGRGETGRPG 231
G+ +T P G +G G+PG
Sbjct: 1344 AGAEGPPGKTGPVGPQGPAGKPG 1366
Score = 32.0 bits (71), Expect = 0.48
Identities = 35/125 (28%), Positives = 42/125 (33%), Gaps = 20/125 (16%)
Query: 109 TGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPG 168
+G P G P +G GA GA RQ GA + GP
Sbjct: 1311 SGEAGPPGPPGKRGPPGAA--------------GAEGRQGEKGAKGEAGAEGPPGKTGPV 1356
Query: 169 GQQ--QGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGE 226
G Q G EG P +G GA G+ G G G + PG +GE
Sbjct: 1357 GPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPM----GPPGLPGLKGDPGSKGE 1412
Query: 227 TGRPG 231
G PG
Sbjct: 1413 KGHPG 1417
Score = 30.4 bits (67), Expect = 1.4
Identities = 37/134 (27%), Positives = 45/134 (33%), Gaps = 29/134 (21%)
Query: 106 RAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARP 165
R + G P G P +G SG G + G V + P
Sbjct: 849 RGSRGARGPTGKPGPKGTSGGDGPP-----------GPPGERGPQGPQGPVGFPGPKGPP 897
Query: 166 GPGGQ--------QQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSW 217
GP G+ Q+G +G+ P G G G GE G GE R H G
Sbjct: 898 GPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGE--RGHPGP----- 950
Query: 218 RTRPGGRGETGRPG 231
PG GE G PG
Sbjct: 951 ---PGPPGEQGLPG 961
Score = 30.4 bits (67), Expect = 1.4
Identities = 43/151 (28%), Positives = 51/151 (33%), Gaps = 18/151 (11%)
Query: 96 HPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRA 155
HP R + TG P G QG +G T + + G Q L GA
Sbjct: 908 HPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGP--IGERGHPGPPGPPGEQGLPGAA-G 964
Query: 156 VDGFVAQARPGPGGQQ-----------QGGHEAEGQHDRPRTGRGRGALGAGGERGRAGE 204
+G A+ PGP G G G P G G G G G GE
Sbjct: 965 KEG--AKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGE 1022
Query: 205 RRRAHGGSAWRSWRTRPGGRGETGRPGGRTG 235
R A G + RPG +G G P G G
Sbjct: 1023 RGSA-GTAGPIGLPGRPGPQGPPG-PAGEKG 1051
Score = 30.0 bits (66), Expect = 1.8
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 24/84 (28%)
Query: 165 PGPGGQ-----------------QQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRR 207
PGP GQ +QG + G P +GA G G+ G G+R
Sbjct: 786 PGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQR-- 843
Query: 208 AHGGSAWRSWRTRPGGRGETGRPG 231
G + R R G RG TG+PG
Sbjct: 844 --GPTGPRGSR---GARGPTGKPG 862
Score = 30.0 bits (66), Expect = 1.8
Identities = 37/143 (25%), Positives = 46/143 (32%), Gaps = 34/143 (23%)
Query: 91 VQGLLHPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLL 150
+QGL P G + G V P G P G G GA Q
Sbjct: 1160 LQGLPGPPGE-----KGENGDVGPMGPPGPPGPRGPQGP-----------NGADGPQGPP 1203
Query: 151 GAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRA-- 208
G+ +V G + PG G EA G GG +G GE+ A
Sbjct: 1204 GSVGSVGGVGEKGEPGEAGNPGPPGEA----------------GVGGPKGERGEKGEAGP 1247
Query: 209 HGGSAWRSWRTRPGGRGETGRPG 231
G + + PG G G PG
Sbjct: 1248 PGAAGPPGAKGPPGDDGPKGNPG 1270
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 38.9 bits (89), Expect = 0.004
Identities = 36/134 (26%), Positives = 47/134 (35%), Gaps = 18/134 (13%)
Query: 114 PAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQ----------- 162
P G P GA G L +GG ++ + A A + Q
Sbjct: 473 PPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPG 532
Query: 163 -----ARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSW 217
RPGP G G A+G+ P RG G G G+ G+R R G R
Sbjct: 533 PMGLTGRPGPVGGP-GSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRP-GADGGRGM 590
Query: 218 RTRPGGRGETGRPG 231
PG +G+ G G
Sbjct: 591 PGEPGAKGDRGFDG 604
Score = 35.8 bits (81), Expect = 0.033
Identities = 46/161 (28%), Positives = 62/161 (38%), Gaps = 27/161 (16%)
Query: 92 QGLLHPSGRVAAQARAATGGVH----PAGHPQAQGASGATAA-------ARLSHQLLAAH 140
QG + P G Q + G+ P GHP +G SG A + +
Sbjct: 705 QGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGV 764
Query: 141 GGAAARQLLLGA--GRAVDGFVAQARPGPGGQQ--QGGHEAEGQ-----HDRPRTGRGR- 190
GA + L G+ + DGF PG G +G GQ D P +GR
Sbjct: 765 KGADGVRGLKGSKGEKGEDGF-----PGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRA 819
Query: 191 GALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPG 231
G G G G+AGE+ + G + R G +G TG PG
Sbjct: 820 GPTGDPGPSGQAGEKGKL-GVPGLPGYPGRQGPKGSTGFPG 859
Score = 33.5 bits (75), Expect = 0.16
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 16/83 (19%)
Query: 165 PGPGGQQQ-GGHEAE-------------GQHDRPRTGRGRGALGAGGERGRAGER-RRAH 209
PGP GQ GG + E G+ P RG GA G GR GE+ +
Sbjct: 1323 PGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGE 1382
Query: 210 GGSAWRSWRTRP-GGRGETGRPG 231
G+ +T P G +G G+PG
Sbjct: 1383 AGAEGPPGKTGPVGPQGPAGKPG 1405
Score = 32.0 bits (71), Expect = 0.48
Identities = 35/125 (28%), Positives = 42/125 (33%), Gaps = 20/125 (16%)
Query: 109 TGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPG 168
+G P G P +G GA GA RQ GA + GP
Sbjct: 1350 SGEAGPPGPPGKRGPPGAA--------------GAEGRQGEKGAKGEAGAEGPPGKTGPV 1395
Query: 169 GQQ--QGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGE 226
G Q G EG P +G GA G+ G G G + PG +GE
Sbjct: 1396 GPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPM----GPPGLPGLKGDPGSKGE 1451
Query: 227 TGRPG 231
G PG
Sbjct: 1452 KGHPG 1456
Score = 30.4 bits (67), Expect = 1.4
Identities = 37/134 (27%), Positives = 45/134 (33%), Gaps = 29/134 (21%)
Query: 106 RAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARP 165
R + G P G P +G SG G + G V + P
Sbjct: 888 RGSRGARGPTGKPGPKGTSGGDGPP-----------GPPGERGPQGPQGPVGFPGPKGPP 936
Query: 166 GPGGQ--------QQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSW 217
GP G+ Q+G +G+ P G G G GE G GE R H G
Sbjct: 937 GPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGE--RGHPGP----- 989
Query: 218 RTRPGGRGETGRPG 231
PG GE G PG
Sbjct: 990 ---PGPPGEQGLPG 1000
Score = 30.4 bits (67), Expect = 1.4
Identities = 43/151 (28%), Positives = 51/151 (33%), Gaps = 18/151 (11%)
Query: 96 HPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRA 155
HP R + TG P G QG +G T + + G Q L GA
Sbjct: 947 HPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGP--IGERGHPGPPGPPGEQGLPGAA-G 1003
Query: 156 VDGFVAQARPGPGGQQ-----------QGGHEAEGQHDRPRTGRGRGALGAGGERGRAGE 204
+G A+ PGP G G G P G G G G G GE
Sbjct: 1004 KEG--AKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGE 1061
Query: 205 RRRAHGGSAWRSWRTRPGGRGETGRPGGRTG 235
R A G + RPG +G G P G G
Sbjct: 1062 RGSA-GTAGPIGLPGRPGPQGPPG-PAGEKG 1090
Score = 30.0 bits (66), Expect = 1.8
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 24/84 (28%)
Query: 165 PGPGGQ-----------------QQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRR 207
PGP GQ +QG + G P +GA G G+ G G+R
Sbjct: 825 PGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQR-- 882
Query: 208 AHGGSAWRSWRTRPGGRGETGRPG 231
G + R R G RG TG+PG
Sbjct: 883 --GPTGPRGSR---GARGPTGKPG 901
Score = 30.0 bits (66), Expect = 1.8
Identities = 37/143 (25%), Positives = 46/143 (32%), Gaps = 34/143 (23%)
Query: 91 VQGLLHPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLL 150
+QGL P G + G V P G P G G GA Q
Sbjct: 1199 LQGLPGPPGE-----KGENGDVGPMGPPGPPGPRGPQGP-----------NGADGPQGPP 1242
Query: 151 GAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRA-- 208
G+ +V G + PG G EA G GG +G GE+ A
Sbjct: 1243 GSVGSVGGVGEKGEPGEAGNPGPPGEA----------------GVGGPKGERGEKGEAGP 1286
Query: 209 HGGSAWRSWRTRPGGRGETGRPG 231
G + + PG G G PG
Sbjct: 1287 PGAAGPPGAKGPPGDDGPKGNPG 1309
>gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 38.9 bits (89), Expect = 0.004
Identities = 34/104 (32%), Positives = 43/104 (41%), Gaps = 14/104 (13%)
Query: 105 ARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAH-----GGAAARQLLLGAGRAVDGF 159
A A GG AG + + SG R Q A GAAAR L AG++
Sbjct: 58 AGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKS---- 113
Query: 160 VAQARPGPGGQ--QQGGHEAEGQHDRPRTGRGRGALGAGGERGR 201
A P PGG+ ++G A + GRG GA + GE R
Sbjct: 114 ---AEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEPER 154
>gi|169169847 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 38.9 bits (89), Expect = 0.004
Identities = 42/125 (33%), Positives = 53/125 (42%), Gaps = 16/125 (12%)
Query: 119 QAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQAR--PGPGGQQQ--GG 174
Q GA A AAA + H+ AH AR+ L+ A +A R G GGQ++ G
Sbjct: 151 QLLGADAAAAAA-VQHE---AHARRTARRWLVRAPARPAAVLADGRLQGGQGGQRRSVGA 206
Query: 175 HEAEGQHDRP--RTGRGRGALGA----GGERGRAGERRRAH--GGSAWRSWRTRPGGRGE 226
H G+ P + GA GA GE G+ AH GG W R+ G GE
Sbjct: 207 HALPGRPRVPPWQPPAAAGAPGAYPAAEGEEDHEGDADGAHTGGGHGWHCGRSGGRGGGE 266
Query: 227 TGRPG 231
G G
Sbjct: 267 RGAAG 271
>gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo
sapiens]
Length = 304
Score = 38.9 bits (89), Expect = 0.004
Identities = 34/95 (35%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 141 GGAAARQLLLGAG-RAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGER 199
GG AA +L AG R+ G A PG G + G G R T RGRG G
Sbjct: 63 GGPAAGSAILRAGSRSPRG----AGPGAAGPRAAGRGGAGGGGRCCT-RGRGRFPCAGSG 117
Query: 200 GRAGERRRAHGGSAWRS----WRTRPGGRGETGRP 230
GR R H S RS W P RG P
Sbjct: 118 GRGARSRGCHSPSCCRSSSCAWHRWPQLRGREAEP 152
>gi|239749096 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 38.9 bits (89), Expect = 0.004
Identities = 34/104 (32%), Positives = 43/104 (41%), Gaps = 14/104 (13%)
Query: 105 ARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAH-----GGAAARQLLLGAGRAVDGF 159
A A GG AG + + SG R Q A GAAAR L AG++
Sbjct: 58 AGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKS---- 113
Query: 160 VAQARPGPGGQ--QQGGHEAEGQHDRPRTGRGRGALGAGGERGR 201
A P PGG+ ++G A + GRG GA + GE R
Sbjct: 114 ---AEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEPER 154
>gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo
sapiens]
Length = 304
Score = 38.9 bits (89), Expect = 0.004
Identities = 34/95 (35%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 141 GGAAARQLLLGAG-RAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGER 199
GG AA +L AG R+ G A PG G + G G R T RGRG G
Sbjct: 63 GGPAAGSAILRAGSRSPRG----AGPGAAGPRAAGRGGAGGGGRCCT-RGRGRFPCAGSG 117
Query: 200 GRAGERRRAHGGSAWRS----WRTRPGGRGETGRP 230
GR R H S RS W P RG P
Sbjct: 118 GRGARSRGCHSPSCCRSSSCAWHRWPQLRGREAEP 152
>gi|4506501 regulatory factor X-associated protein [Homo sapiens]
Length = 272
Score = 38.9 bits (89), Expect = 0.004
Identities = 44/144 (30%), Positives = 57/144 (39%), Gaps = 15/144 (10%)
Query: 92 QGLLHPSGRVAAQARAATGGVHPAGHPQAQGASGATAAAR---LSHQLLAAHGGAAARQL 148
QG+ +G AA + PA P AS A AA++ L Q A AAA
Sbjct: 4 QGVAEGAGPGAASGVPHPAALAPAAAPTLAPASVAAAASQFTLLVMQPCAGQDEAAAPGG 63
Query: 149 LLGAGRAVDGFVAQARPGPGGQQQGGHEAE--GQHDRPRTGRGRGALG--------AGGE 198
+GAG+ V A G G ++ G EA+ D P G +L +GGE
Sbjct: 64 SVGAGKPVRYLCEGA--GDGEEEAGEDEADLLDTSDPPGGGESAASLEDLEDEETHSGGE 121
Query: 199 RGRAGERRRAHGGSAWRSWRTRPG 222
G RRR GG + T G
Sbjct: 122 GSSGGARRRGSGGGSMSKTCTYEG 145
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,263,218
Number of Sequences: 37866
Number of extensions: 624793
Number of successful extensions: 5388
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 416
Number of HSP's that attempted gapping in prelim test: 3709
Number of HSP's gapped (non-prelim): 1534
length of query: 236
length of database: 18,247,518
effective HSP length: 99
effective length of query: 137
effective length of database: 14,498,784
effective search space: 1986333408
effective search space used: 1986333408
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.