Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239751287
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751287 PREDICTED: hypothetical protein XP_002347786 [Homo
sapiens]
(196 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756815 PREDICTED: hypothetical protein [Homo sapiens] 410 e-115
gi|239751287 PREDICTED: hypothetical protein XP_002347786 [Homo ... 410 e-115
gi|239745782 PREDICTED: hypothetical protein XP_002343553 [Homo ... 410 e-115
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 42 3e-04
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 38 0.006
gi|239756453 PREDICTED: hypothetical protein XP_002344992 [Homo ... 37 0.014
gi|55769533 PRKC, apoptosis, WT1, regulator [Homo sapiens] 35 0.031
gi|239754474 PREDICTED: similar to mucin [Homo sapiens] 35 0.031
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 35 0.031
gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo ... 35 0.041
gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo ... 35 0.041
gi|239745169 PREDICTED: hypothetical protein XP_002343388 [Homo ... 35 0.041
gi|239508698 PREDICTED: similar to mucin [Homo sapiens] 35 0.041
gi|239756562 PREDICTED: hypothetical protein [Homo sapiens] 35 0.053
gi|62362414 c-abl oncogene 1, receptor tyrosine kinase isoform a... 34 0.070
gi|62362412 c-abl oncogene 1, receptor tyrosine kinase isoform b... 34 0.070
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 34 0.091
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 34 0.091
gi|239751791 PREDICTED: hypothetical protein [Homo sapiens] 33 0.12
gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo ... 33 0.12
gi|239757099 PREDICTED: hypothetical protein [Homo sapiens] 33 0.16
gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo ... 33 0.16
gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo ... 33 0.16
gi|188536004 zinc finger protein 469 [Homo sapiens] 33 0.16
gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens] 33 0.16
gi|56606114 trichohyalin-like 1 [Homo sapiens] 33 0.16
gi|153285461 fibroblast growth factor 2 [Homo sapiens] 33 0.20
gi|199559779 coiled-coil domain containing 8 [Homo sapiens] 33 0.20
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom... 32 0.26
gi|66529407 tensin [Homo sapiens] 32 0.26
>gi|239756815 PREDICTED: hypothetical protein [Homo sapiens]
Length = 196
Score = 410 bits (1055), Expect = e-115
Identities = 196/196 (100%), Positives = 196/196 (100%)
Query: 1 MAAASVPPESSIIHPASSAIKRTDGGRLELEIRIGIFAQFWSACLLFPRCSQPRQPRSWG 60
MAAASVPPESSIIHPASSAIKRTDGGRLELEIRIGIFAQFWSACLLFPRCSQPRQPRSWG
Sbjct: 1 MAAASVPPESSIIHPASSAIKRTDGGRLELEIRIGIFAQFWSACLLFPRCSQPRQPRSWG 60
Query: 61 PRVNAFALWPATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQ 120
PRVNAFALWPATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQ
Sbjct: 61 PRVNAFALWPATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQ 120
Query: 121 GKIRSPAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTP 180
GKIRSPAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTP
Sbjct: 121 GKIRSPAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTP 180
Query: 181 SQPPLSGYKTPNKRNL 196
SQPPLSGYKTPNKRNL
Sbjct: 181 SQPPLSGYKTPNKRNL 196
>gi|239751287 PREDICTED: hypothetical protein XP_002347786 [Homo
sapiens]
Length = 196
Score = 410 bits (1055), Expect = e-115
Identities = 196/196 (100%), Positives = 196/196 (100%)
Query: 1 MAAASVPPESSIIHPASSAIKRTDGGRLELEIRIGIFAQFWSACLLFPRCSQPRQPRSWG 60
MAAASVPPESSIIHPASSAIKRTDGGRLELEIRIGIFAQFWSACLLFPRCSQPRQPRSWG
Sbjct: 1 MAAASVPPESSIIHPASSAIKRTDGGRLELEIRIGIFAQFWSACLLFPRCSQPRQPRSWG 60
Query: 61 PRVNAFALWPATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQ 120
PRVNAFALWPATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQ
Sbjct: 61 PRVNAFALWPATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQ 120
Query: 121 GKIRSPAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTP 180
GKIRSPAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTP
Sbjct: 121 GKIRSPAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTP 180
Query: 181 SQPPLSGYKTPNKRNL 196
SQPPLSGYKTPNKRNL
Sbjct: 181 SQPPLSGYKTPNKRNL 196
>gi|239745782 PREDICTED: hypothetical protein XP_002343553 [Homo
sapiens]
Length = 196
Score = 410 bits (1055), Expect = e-115
Identities = 196/196 (100%), Positives = 196/196 (100%)
Query: 1 MAAASVPPESSIIHPASSAIKRTDGGRLELEIRIGIFAQFWSACLLFPRCSQPRQPRSWG 60
MAAASVPPESSIIHPASSAIKRTDGGRLELEIRIGIFAQFWSACLLFPRCSQPRQPRSWG
Sbjct: 1 MAAASVPPESSIIHPASSAIKRTDGGRLELEIRIGIFAQFWSACLLFPRCSQPRQPRSWG 60
Query: 61 PRVNAFALWPATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQ 120
PRVNAFALWPATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQ
Sbjct: 61 PRVNAFALWPATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQ 120
Query: 121 GKIRSPAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTP 180
GKIRSPAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTP
Sbjct: 121 GKIRSPAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTP 180
Query: 181 SQPPLSGYKTPNKRNL 196
SQPPLSGYKTPNKRNL
Sbjct: 181 SQPPLSGYKTPNKRNL 196
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 42.0 bits (97), Expect = 3e-04
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 12/93 (12%)
Query: 70 PATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPE 129
P +R + +R +P+ + H G+ R + R K SP+P
Sbjct: 640 PPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTR------------EARSPQPNKRHSPSPR 687
Query: 130 PAGGEASSSPAPEERGPSHCSQANVSPASCTLP 162
P + SSSP P RG S Q SP+ T P
Sbjct: 688 PRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRP 720
Score = 30.4 bits (67), Expect = 1.0
Identities = 46/162 (28%), Positives = 61/162 (37%), Gaps = 15/162 (9%)
Query: 49 RCSQPRQPRSWGPRVNAFALWPATRR-----PAHTGRRVTPARACS---HTSGTGAGRKR 100
R P + S PR P RR P T RR +P+ A + T R+R
Sbjct: 521 RRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRR 580
Query: 101 KGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEER-GPSHCSQANVS---- 155
+R S R + SP+P P AS P P+ R PS + VS
Sbjct: 581 TPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPP 640
Query: 156 PASCTLP-GKTRIHSLCREGNAGRTPSQPPLSGYK-TPNKRN 195
P + P K R SL + G +PS+ PNKR+
Sbjct: 641 PKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRH 682
Score = 27.7 bits (60), Expect = 6.5
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 98 RKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEER 144
R+RK S +R S RRE+ + RSP S SPAPE++
Sbjct: 173 RRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTK--SRSPSPAPEKK 217
Score = 27.7 bits (60), Expect = 6.5
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 89 SHTSGTGAGRKRKGGETSFQREWSENRREKGQG----KIRSPAPEPAGGEASSSPAPEER 144
SH GR+R+ S S +R+K + RSP+P P S SPAP R
Sbjct: 510 SHVKNGEVGRRRRHSP-SRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPR 568
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 37.7 bits (86), Expect = 0.006
Identities = 38/140 (27%), Positives = 49/140 (35%), Gaps = 15/140 (10%)
Query: 51 SQPRQPRSWGPRVNAFALWPATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSFQRE 110
S P +P S PRV A A PA +P A S G G + GG + +R
Sbjct: 333 SPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSA---PSSQGRGGRAAGG--AGRRR 387
Query: 111 WSENRREKGQGKIRSPA------PEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGK 164
RR + + +P P PA SS R S +P PG
Sbjct: 388 RRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGS 447
Query: 165 TRIHSLCREGNAGRTPSQPP 184
R H G+ R +PP
Sbjct: 448 ERGHG----GHGKRAKERPP 463
>gi|239756453 PREDICTED: hypothetical protein XP_002344992 [Homo
sapiens]
Length = 474
Score = 36.6 bits (83), Expect = 0.014
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 91 TSGTGA---GRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEERGP 146
T G+GA R+R+GG + R SE RR +G G+ R P P G + PAP ER P
Sbjct: 420 TDGSGALPLRRQRRGGSFNLCRCSSE-RRPRGPGRRRHPDP---GTSSQPRPAPRERAP 474
>gi|55769533 PRKC, apoptosis, WT1, regulator [Homo sapiens]
Length = 340
Score = 35.4 bits (80), Expect = 0.031
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 14/93 (15%)
Query: 102 GGETSFQREWSENRREKGQGKIRSPAPEPAGG---EASSSPAPEERGPSHCSQANV---- 154
G T F EW +REK + K P P P GG +A+ P G + AN
Sbjct: 14 GSTTDFLEEWKA-KREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNN 72
Query: 155 ----SPASCTLPGKTRIHSLCREGNAGRTPSQP 183
+PA+ +PG ++ C G+A T + P
Sbjct: 73 LPGGAPAAPAVPGPGGVN--CAVGSAMLTRAAP 103
>gi|239754474 PREDICTED: similar to mucin [Homo sapiens]
Length = 417
Score = 35.4 bits (80), Expect = 0.031
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 11/104 (10%)
Query: 98 RKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGE-----ASSSPAPEERGPSHCSQA 152
R RK E+S +W EN + K + P +PAGG + SSP+ +++G +
Sbjct: 11 RLRKLRESSEGDQWLENEKTKPLRPQQQPQCQPAGGTGQRRGSGSSPSADQQGAQDREE- 69
Query: 153 NVSPASCTLPGKTRIHSLCREGNAGRTPSQPPLSGYKTPNKRNL 196
+ P + + RE A P P SG++T ++ L
Sbjct: 70 ----EAAAAPAADQQRAQDREEEAAAAP-VPTSSGHRTEKRKRL 108
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 35.4 bits (80), Expect = 0.031
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 13/134 (9%)
Query: 51 SQPRQPRSWGPRVNAFALWPATRRPAHTGRRVTPAR-ACSHTSGTGAGRKRKGGETSFQR 109
S+ R P+ W R + W +R P GR +P R S + T +R+G S +R
Sbjct: 506 SRSRSPQ-WR-RSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNT----QRRGRSRSARR 559
Query: 110 EWSENRREKGQGKIRSPAPEPAGGEASSSPA---PEERGPSHCSQANVSPASCTLPGKTR 166
S +R +G+ RS P G S +PA R P+ + +PA G++R
Sbjct: 560 GRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPAR---RGRSR 616
Query: 167 IHSLCREGNAGRTP 180
+ R + R+P
Sbjct: 617 SRTPARRRSRTRSP 630
Score = 35.4 bits (80), Expect = 0.031
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 15/127 (11%)
Query: 72 TRRPAHTGRRV--TPARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPE 129
+R PA GR TPAR S T A R+ + + +R S +G+ + R+PA
Sbjct: 564 SRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARR 623
Query: 130 PAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNA-GRTPSQPPLSGY 188
+ + R P+ S G++R + R G + RTP++ S
Sbjct: 624 RSRTRSPVRRRSRSRSPARRS------------GRSRSRTPARRGRSRSRTPARRGRSRS 671
Query: 189 KTPNKRN 195
+TP +R+
Sbjct: 672 RTPARRS 678
Score = 33.1 bits (74), Expect = 0.16
Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 15/144 (10%)
Query: 51 SQPRQPRSWGPRVNAFALWPATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSFQRE 110
S+ R P G + W +R GR +P R G +R G S +
Sbjct: 495 SRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRR-----GRSRSPQRPGWSRSRNTQ 549
Query: 111 WSENRREKGQGKIRSPAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSL 170
R +G+ S +P G S +PA R S +PA ++R +
Sbjct: 550 RRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSR------TPAR----RRSRSRTP 599
Query: 171 CREGNAGRTPSQPPLSGYKTPNKR 194
R + RTP++ S +TP +R
Sbjct: 600 TRRRSRSRTPARRGRSRSRTPARR 623
Score = 31.6 bits (70), Expect = 0.45
Identities = 31/127 (24%), Positives = 48/127 (37%), Gaps = 4/127 (3%)
Query: 70 PATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQGKIRSP--A 127
P ++ +H R ++ SHT GR R R S ++G + RSP
Sbjct: 457 PTSKNRSHG--RAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWR 514
Query: 128 PEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTPSQPPLSG 187
+ S +P+ RG S Q S + R S R + R+P+ S
Sbjct: 515 RSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSR 574
Query: 188 YKTPNKR 194
+TP +R
Sbjct: 575 SRTPARR 581
Score = 31.6 bits (70), Expect = 0.45
Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Query: 72 TRRPAHTGRRVTPARACSHT-SGTGAGRKRKGGETSFQR-----EWSENRREKGQGKIRS 125
TRR +G + +R + S + R+R+GG R E S + +G+ R+
Sbjct: 1785 TRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRT 1844
Query: 126 PAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTPSQ 182
P + +SPAP +R S S A + P +R S R R S+
Sbjct: 1845 PPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSR 1901
>gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo
sapiens]
Length = 238
Score = 35.0 bits (79), Expect = 0.041
Identities = 35/117 (29%), Positives = 42/117 (35%), Gaps = 16/117 (13%)
Query: 84 PARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPA--GGEASSSPAP 141
P RA HT GAGR W + G+ +PAP A G +SP P
Sbjct: 69 PERAAVHTRSLGAGR-----VVRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPP 123
Query: 142 EERG-------PSHCSQANVSPASCTLPGKTRIHSLCREGNAG--RTPSQPPLSGYK 189
E G P A+ SP T P RE TPS P+S +K
Sbjct: 124 GEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHK 180
>gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo
sapiens]
Length = 238
Score = 35.0 bits (79), Expect = 0.041
Identities = 35/117 (29%), Positives = 42/117 (35%), Gaps = 16/117 (13%)
Query: 84 PARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPA--GGEASSSPAP 141
P RA HT GAGR W + G+ +PAP A G +SP P
Sbjct: 69 PERAAVHTRSLGAGR-----VVRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPP 123
Query: 142 EERG-------PSHCSQANVSPASCTLPGKTRIHSLCREGNAG--RTPSQPPLSGYK 189
E G P A+ SP T P RE TPS P+S +K
Sbjct: 124 GEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHK 180
>gi|239745169 PREDICTED: hypothetical protein XP_002343388 [Homo
sapiens]
Length = 238
Score = 35.0 bits (79), Expect = 0.041
Identities = 35/117 (29%), Positives = 42/117 (35%), Gaps = 16/117 (13%)
Query: 84 PARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPA--GGEASSSPAP 141
P RA HT GAGR W + G+ +PAP A G +SP P
Sbjct: 69 PERAAVHTRSLGAGR-----VVRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPP 123
Query: 142 EERG-------PSHCSQANVSPASCTLPGKTRIHSLCREGNAG--RTPSQPPLSGYK 189
E G P A+ SP T P RE TPS P+S +K
Sbjct: 124 GEEGRAGAWRSPGEAGAADGSPHVSTSPTPAPGRRGGREARLRPMPTPSWIPVSSHK 180
>gi|239508698 PREDICTED: similar to mucin [Homo sapiens]
Length = 265
Score = 35.0 bits (79), Expect = 0.041
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 98 RKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGE-----ASSSPAPEERGPSHCSQA 152
R RK E+S +W EN + K + P +PAGG + SSP+ +++G +
Sbjct: 11 RLRKLRESSEGDQWLENEKTKPLRPQQQPQCQPAGGTGQRRGSGSSPSADQQGAQDREE- 69
Query: 153 NVSPASCTLPGKTRIHSLCREGNAGRTPSQPPLSGYKTPNKR 194
+ P + + RE A P+ P SG++T ++
Sbjct: 70 ----EAAAAPAADQQRAQDREEEAAAAPA-PTSSGHRTEKRK 106
>gi|239756562 PREDICTED: hypothetical protein [Homo sapiens]
Length = 235
Score = 34.7 bits (78), Expect = 0.053
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 51 SQPRQPRSWGPRVNAFALWPATRRP--AHTGRRVTPARACSHTSGTGAGRKRKGGETSFQ 108
+QP Q + A PA RRP +H GRR+TPA A S G +R+ + +
Sbjct: 32 AQPAQAADEVLELPALLQRPAGRRPCASHRGRRITPATALLLLSHRGRA-ERRSMQAAAA 90
Query: 109 REWSENRREKGQGKIRSPAPEPAGGEASSSPAPEERGPS 147
+ S RR G+G P E+ + AP +R PS
Sbjct: 91 KAGSPGRRRVGKG--------PPSRESWTRSAP-QRCPS 120
>gi|62362414 c-abl oncogene 1, receptor tyrosine kinase isoform a
[Homo sapiens]
Length = 1130
Score = 34.3 bits (77), Expect = 0.070
Identities = 38/127 (29%), Positives = 47/127 (37%), Gaps = 30/127 (23%)
Query: 83 TPARACSHTSGTGAGRKRKGGETSFQREWSENRREK--------GQGKIR--SPAPEP-- 130
TPA A T + AG GG + E S RR K +GK+ PAP P
Sbjct: 844 TPAAAEPVTPTSKAGSGAPGGTSKGPAEESRVRRHKHSSESPGRDKGKLSRLKPAPPPPP 903
Query: 131 ------AGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTPSQPP 184
AGG+ S SP+ E G + L KT+ SL N+ P
Sbjct: 904 AASAGKAGGKPSQSPSQEAAGEA------------VLGAKTKATSLVDAVNSDAAKPSQP 951
Query: 185 LSGYKTP 191
G K P
Sbjct: 952 GEGLKKP 958
>gi|62362412 c-abl oncogene 1, receptor tyrosine kinase isoform b
[Homo sapiens]
Length = 1149
Score = 34.3 bits (77), Expect = 0.070
Identities = 38/127 (29%), Positives = 47/127 (37%), Gaps = 30/127 (23%)
Query: 83 TPARACSHTSGTGAGRKRKGGETSFQREWSENRREK--------GQGKIR--SPAPEP-- 130
TPA A T + AG GG + E S RR K +GK+ PAP P
Sbjct: 863 TPAAAEPVTPTSKAGSGAPGGTSKGPAEESRVRRHKHSSESPGRDKGKLSRLKPAPPPPP 922
Query: 131 ------AGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTPSQPP 184
AGG+ S SP+ E G + L KT+ SL N+ P
Sbjct: 923 AASAGKAGGKPSQSPSQEAAGEA------------VLGAKTKATSLVDAVNSDAAKPSQP 970
Query: 185 LSGYKTP 191
G K P
Sbjct: 971 GEGLKKP 977
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 33.9 bits (76), Expect = 0.091
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 124 RSPAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKT-RIHSLCREGNAGRTPSQ 182
R+P+P P G EA+ SP+ +R PS S V S T R L E A PS
Sbjct: 684 RAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEHGSPRTRDPTPRPPGLPEEATALAAPSP 743
Query: 183 P 183
P
Sbjct: 744 P 744
Score = 33.5 bits (75), Expect = 0.12
Identities = 30/109 (27%), Positives = 41/109 (37%), Gaps = 16/109 (14%)
Query: 84 PARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEE 143
P A S + + + + GG + E R + +G+I G S SP+PE
Sbjct: 606 PLPASSDSERSASSVEGPGGALYARVARREARPARARGEI---------GGLSLSPSPER 656
Query: 144 RGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTPSQPPLSGYKTPN 192
R P P T P + IH AGR PS PP P+
Sbjct: 657 RKPP-------PPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGSEAAPS 698
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 33.9 bits (76), Expect = 0.091
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 124 RSPAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKT-RIHSLCREGNAGRTPSQ 182
R+P+P P G EA+ SP+ +R PS S V S T R L E A PS
Sbjct: 679 RAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEHGSPRTRDPTPRPPGLPEEATALAAPSP 738
Query: 183 P 183
P
Sbjct: 739 P 739
Score = 33.5 bits (75), Expect = 0.12
Identities = 30/109 (27%), Positives = 41/109 (37%), Gaps = 16/109 (14%)
Query: 84 PARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEE 143
P A S + + + + GG + E R + +G+I G S SP+PE
Sbjct: 601 PLPASSDSERSASSVEGPGGALYARVARREARPARARGEI---------GGLSLSPSPER 651
Query: 144 RGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTPSQPPLSGYKTPN 192
R P P T P + IH AGR PS PP P+
Sbjct: 652 RKPP-------PPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGSEAAPS 693
>gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]
Length = 650
Score = 33.5 bits (75), Expect = 0.12
Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 93 GTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEERGPSHCSQA 152
G GR+R G R W RR K + + R P P PAG P+ G C +
Sbjct: 62 GNSGGRRRAGN-----RAWGSGRRGKSR-RSRGPGPWPAGSGGPRCPSAPSDGVRRCPRL 115
Query: 153 NVSPA 157
A
Sbjct: 116 TAHAA 120
Score = 29.6 bits (65), Expect = 1.7
Identities = 27/91 (29%), Positives = 32/91 (35%), Gaps = 15/91 (16%)
Query: 48 PRCSQPRQPRSWGPRVNAFALWPATRRPAHTGRRVTPARACS-----HTSGTGAGRKRKG 102
PR R WG A L P +RPA +R + R CS S T A R
Sbjct: 198 PRPGPTSSRRPWG---RAGGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRPTAP 254
Query: 103 GETSFQREWSENRREKGQGKIRSPAPEPAGG 133
+ RR R+P P AGG
Sbjct: 255 SSVAQPSSARSQRR-------RAPCPHRAGG 278
>gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo
sapiens]
Length = 725
Score = 33.5 bits (75), Expect = 0.12
Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 93 GTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEERGPSHCSQA 152
G GR+R G R W RR K + + R P P PAG P+ G C +
Sbjct: 62 GNSGGRRRAGN-----RAWGSGRRGKSR-RSRGPGPWPAGSGGPRCPSAPSDGVRRCPRL 115
Query: 153 NVSPA 157
A
Sbjct: 116 TAHAA 120
Score = 29.6 bits (65), Expect = 1.7
Identities = 27/91 (29%), Positives = 32/91 (35%), Gaps = 15/91 (16%)
Query: 48 PRCSQPRQPRSWGPRVNAFALWPATRRPAHTGRRVTPARACS-----HTSGTGAGRKRKG 102
PR R WG A L P +RPA +R + R CS S T A R
Sbjct: 198 PRPGPTSSRRPWG---RAGGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRPTAP 254
Query: 103 GETSFQREWSENRREKGQGKIRSPAPEPAGG 133
+ RR R+P P AGG
Sbjct: 255 SSVAQPSSARSQRR-------RAPCPHRAGG 278
>gi|239757099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 33.1 bits (74), Expect = 0.16
Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 93 GTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEERGPSHCSQA 152
GT RKG + S + + ++ P G EAS PAP R +H +
Sbjct: 35 GTAGHDLRKGHRKQLEDTGSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRL 94
Query: 153 NVSPASCTLPGKTRIHSLCRE---GNAGRTPS--QPPLSGYKTP 191
PAS T P +TR GR PS +PP+S P
Sbjct: 95 ---PASPTGPPETRARLAWAPRFLPTNGRRPSPPRPPMSAPTPP 135
>gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo
sapiens]
Length = 208
Score = 33.1 bits (74), Expect = 0.16
Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 93 GTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEERGPSHCSQA 152
GT RKG + S + + ++ P G EAS PAP R +H +
Sbjct: 35 GTAGHDLRKGHRKQLEDTGSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRL 94
Query: 153 NVSPASCTLPGKTRIHSLCRE---GNAGRTPS--QPPLSGYKTP 191
PAS T P +TR GR PS +PP+S P
Sbjct: 95 ---PASPTGPPETRARLAWAPRFLPTNGRRPSPPRPPMSAPTPP 135
>gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo
sapiens]
Length = 208
Score = 33.1 bits (74), Expect = 0.16
Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 93 GTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEERGPSHCSQA 152
GT RKG + S + + ++ P G EAS PAP R +H +
Sbjct: 35 GTAGHDLRKGHRKQLEDTGSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRL 94
Query: 153 NVSPASCTLPGKTRIHSLCRE---GNAGRTPS--QPPLSGYKTP 191
PAS T P +TR GR PS +PP+S P
Sbjct: 95 ---PASPTGPPETRARLAWAPRFLPTNGRRPSPPRPPMSAPTPP 135
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 33.1 bits (74), Expect = 0.16
Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 17/113 (15%)
Query: 94 TGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPE--PAGGEASS-SPAPEERG----- 145
TG G + + Q E + K RSPAPE PA +A S + P E G
Sbjct: 3716 TGGGSQPQPASGQLQSE-TATTPAKPSFPSRSPAPERLPARAQAKSCTKGPREAGEQGPH 3774
Query: 146 ----PSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTPSQPPLSGYKTPNKR 194
P +++ +PG R S+ G A P +PP +TP K+
Sbjct: 3775 GSLGPKEKGESSTKRKKGQVPGPARSESVGSFGRAPSAPDKPP----RTPRKQ 3823
Score = 27.7 bits (60), Expect = 6.5
Identities = 24/85 (28%), Positives = 30/85 (35%), Gaps = 20/85 (23%)
Query: 70 PATRRPAHTGRRVTPARACSHTSGTGAGRKRKGGETSF-------QREWSENRREKGQGK 122
P R P GRR G G KRK E + Q+ R+E G
Sbjct: 1076 PPPRGPGFRGRR-------------GRGEKRKEVELTQGPREDEPQKPRKAARQEAGGDG 1122
Query: 123 IRSPAPEPAGGEASSSPAPEERGPS 147
+ EP G +P+ RGPS
Sbjct: 1123 APANPEEPGGSRPGPGRSPQARGPS 1147
>gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens]
Length = 370
Score = 33.1 bits (74), Expect = 0.16
Identities = 30/104 (28%), Positives = 36/104 (34%), Gaps = 9/104 (8%)
Query: 93 GTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEERGPSHCSQA 152
G GA KR G QR G G R P PAGG A AP G + A
Sbjct: 4 GDGAAFKRPGDGARLQRVL-------GLGSRREPRSLPAGGPAPRRTAPPPPGHASAGPA 56
Query: 153 NVSPASCTLPGKTRIHSLCREGNAG--RTPSQPPLSGYKTPNKR 194
+S KT + +G R P P P++R
Sbjct: 57 AMSSHIAKSESKTSLLKAAAAAASGGSRAPRHGPARDPGLPSRR 100
>gi|56606114 trichohyalin-like 1 [Homo sapiens]
Length = 904
Score = 33.1 bits (74), Expect = 0.16
Identities = 19/61 (31%), Positives = 26/61 (42%)
Query: 94 TGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEERGPSHCSQAN 153
T + +RKG + +E E RE+ KIR E G A+ S P+E C
Sbjct: 218 TSSPTERKGQDKEISQEGDEPAREQSVSKIRDQFGEQEGNLATQSSPPKEATQRPCEDQE 277
Query: 154 V 154
V
Sbjct: 278 V 278
Score = 28.9 bits (63), Expect = 2.9
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 4/108 (3%)
Query: 84 PARACSHTSGTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEE 143
P A H + +G E S + E +G++++ P AG + +SSP +
Sbjct: 169 PGEASEHNDPKN--KHLEGDEQSQEVAQDIQTTEDNEGQLKTNKPM-AGSKKTSSPTERK 225
Query: 144 RGPSHCSQANVSPASCTLPGKTRIHSLCREGNAGRTPSQPPLSGYKTP 191
SQ PA K R +EGN T S PP + P
Sbjct: 226 GQDKEISQEGDEPAREQSVSKIRDQFGEQEGNLA-TQSSPPKEATQRP 272
>gi|153285461 fibroblast growth factor 2 [Homo sapiens]
Length = 288
Score = 32.7 bits (73), Expect = 0.20
Identities = 41/144 (28%), Positives = 50/144 (34%), Gaps = 24/144 (16%)
Query: 38 AQFWSACLLFPRCSQPRQPRSWGPRVNAFALWPATRRPAHTGRRVTPARACSHTSGTGAG 97
A W A L PR +PR+ S PR A A P TR GRR + S G G
Sbjct: 35 AAAWEAAL--PR-RRPRRHPSVNPRSRA-AGSPRTR-----GRRTEERPSGSRLGDRGRG 85
Query: 98 RKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPEERGPSHCSQANVSPA 157
R GG G+ R APE GG R + PA
Sbjct: 86 RALPGGRLG--------------GRGRGRAPERVGGRGRGRGTAAPRAAPAARGSRPGPA 131
Query: 158 SCTLPGK-TRIHSLCREGNAGRTP 180
G T + +L +G +G P
Sbjct: 132 GTMAAGSITTLPALPEDGGSGAFP 155
>gi|199559779 coiled-coil domain containing 8 [Homo sapiens]
Length = 538
Score = 32.7 bits (73), Expect = 0.20
Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 22/111 (19%)
Query: 50 CSQPRQPRSWGPRVNAFALWPATRR-------PAHTGRRVTPAR-----------ACSHT 91
C PR W P++N W + RR P G + + A +
Sbjct: 256 CVPQASPRRWRPKIN----WASFRRRRKEQTAPTGQGADIEADQGGEAADSQREEAIADQ 311
Query: 92 SGTGAGRKRKGGETSFQREWSENRREKGQGKIRSPAPEPAGGEASSSPAPE 142
AG +R G E ++N+RE+ R+ AP G EA+ + E
Sbjct: 312 REGAAGNQRAGAPADQGAEAADNQREEAADNQRAGAPAEEGAEAADNQREE 362
>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
containing 2 [Homo sapiens]
Length = 1455
Score = 32.3 bits (72), Expect = 0.26
Identities = 30/118 (25%), Positives = 43/118 (36%), Gaps = 13/118 (11%)
Query: 70 PATRRPAHTGRRVTPARACSHTSGTGAGRKRKGG-ETSFQREWSENRREKGQGKIRS--- 125
P + GR + ARA + A R GG E SE R +G G +
Sbjct: 1332 PGGQGRPEAGRPASEARAPGLAAADAADAARAGGKEAPRAAAGSELCRREGPGAAPAFAG 1391
Query: 126 ---------PAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPGKTRIHSLCREG 174
A AG A P P G + +A V+P +PG ++ S+ + G
Sbjct: 1392 PGGGGSGALEAEGRAGARAGPRPGPRPPGGAPARKAAVAPGPWKVPGSDKLPSVLKPG 1449
>gi|66529407 tensin [Homo sapiens]
Length = 1735
Score = 32.3 bits (72), Expect = 0.26
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 115 RREKGQGKIRSPAPEPAGGEASSSPAPEERGPSHCSQANVSPASCTLPG----KTRIHSL 170
RR G+ + +PE A+S +P R P C ++ PG + +HS
Sbjct: 895 RRAASDGQYENQSPE-----ATSPRSPGVRSPVQCVSPELALTIALNPGGRPKEPHLHSY 949
Query: 171 CR--EGNAGRTPSQPPLSGYKTP 191
E G +PS PP SG ++P
Sbjct: 950 KEAFEEMEGTSPSSPPPSGVRSP 972
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,681,309
Number of Sequences: 37866
Number of extensions: 636941
Number of successful extensions: 3390
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 271
Number of HSP's that attempted gapping in prelim test: 3134
Number of HSP's gapped (non-prelim): 503
length of query: 196
length of database: 18,247,518
effective HSP length: 97
effective length of query: 99
effective length of database: 14,574,516
effective search space: 1442877084
effective search space used: 1442877084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.