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Search of human proteins with 239751065
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo
sapiens]
(537 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo ... 1100 0.0
gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo ... 488 e-138
gi|239745511 PREDICTED: hypothetical protein XP_002343508 [Homo ... 488 e-138
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 58 2e-08
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 55 2e-07
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 54 3e-07
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 54 5e-07
gi|38787970 tensin like C1 domain containing phosphatase isoform... 52 1e-06
gi|38787957 tensin like C1 domain containing phosphatase isoform... 52 1e-06
gi|38787941 tensin like C1 domain containing phosphatase isoform... 52 1e-06
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 52 1e-06
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 52 2e-06
gi|7662236 TSC22 domain family, member 2 [Homo sapiens] 51 3e-06
gi|55750053 atrophin-1 [Homo sapiens] 50 4e-06
gi|55750041 atrophin-1 [Homo sapiens] 50 4e-06
gi|7662228 synaptosomal-associated protein, 91kDa homolog [Homo ... 50 5e-06
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 49 9e-06
gi|163965366 nascent polypeptide-associated complex alpha subuni... 49 9e-06
gi|150170670 piccolo isoform 2 [Homo sapiens] 49 1e-05
gi|150378539 piccolo isoform 1 [Homo sapiens] 49 1e-05
gi|153792074 proline rich 12 [Homo sapiens] 49 2e-05
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 47 3e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens] 47 4e-05
gi|157168329 formin 1 [Homo sapiens] 46 8e-05
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 46 8e-05
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 46 8e-05
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 46 8e-05
gi|23510413 sorting nexin 26 [Homo sapiens] 46 1e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 45 1e-04
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 45 1e-04
>gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo
sapiens]
Length = 537
Score = 1100 bits (2844), Expect = 0.0
Identities = 537/537 (100%), Positives = 537/537 (100%)
Query: 1 MASRRGAETRGLRRWGRLAAGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRR 60
MASRRGAETRGLRRWGRLAAGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRR
Sbjct: 1 MASRRGAETRGLRRWGRLAAGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRR 60
Query: 61 RQAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSAS 120
RQAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSAS
Sbjct: 61 RQAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSAS 120
Query: 121 PRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFL 180
PRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFL
Sbjct: 121 PRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFL 180
Query: 181 ELKEVDAVDEQDVVREGEAPTPPRGKTSFRRQGRGGGGARAISPPPTVCRRGRGRLGWGG 240
ELKEVDAVDEQDVVREGEAPTPPRGKTSFRRQGRGGGGARAISPPPTVCRRGRGRLGWGG
Sbjct: 181 ELKEVDAVDEQDVVREGEAPTPPRGKTSFRRQGRGGGGARAISPPPTVCRRGRGRLGWGG 240
Query: 241 AGGQVQDVPDTQVSSDLYPSPYLLVGSPEGLQAEQMAGMGVLGPQVEALAGELSSWAQLW 300
AGGQVQDVPDTQVSSDLYPSPYLLVGSPEGLQAEQMAGMGVLGPQVEALAGELSSWAQLW
Sbjct: 241 AGGQVQDVPDTQVSSDLYPSPYLLVGSPEGLQAEQMAGMGVLGPQVEALAGELSSWAQLW 300
Query: 301 GEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSM 360
GEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSM
Sbjct: 301 GEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSM 360
Query: 361 GDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQ 420
GDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQ
Sbjct: 361 GDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQ 420
Query: 421 GSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSP 480
GSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSP
Sbjct: 421 GSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSP 480
Query: 481 KGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSPSSGVVRN 537
KGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSPSSGVVRN
Sbjct: 481 KGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSPSSGVVRN 537
>gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo
sapiens]
Length = 427
Score = 488 bits (1256), Expect = e-138
Identities = 238/245 (97%), Positives = 239/245 (97%), Gaps = 4/245 (1%)
Query: 293 LSSWAQLWGEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAG 352
L+SW LW APRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAG
Sbjct: 187 LTSW--LWVI--APRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAG 242
Query: 353 WRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSI 412
WRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSI
Sbjct: 243 WRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSI 302
Query: 413 SELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPL 472
SELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPL
Sbjct: 303 SELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPL 362
Query: 473 SSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSPSS 532
SSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSPSS
Sbjct: 363 SSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSPSS 422
Query: 533 GVVRN 537
GVVRN
Sbjct: 423 GVVRN 427
Score = 369 bits (948), Expect = e-102
Identities = 200/257 (77%), Positives = 206/257 (80%), Gaps = 15/257 (5%)
Query: 1 MASRRGAETRGLRRWGRLAAGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRR 60
MASRRGAETRGLRRWGRLAAGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRR
Sbjct: 1 MASRRGAETRGLRRWGRLAAGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRR 60
Query: 61 RQAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSAS 120
RQAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSAS
Sbjct: 61 RQAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSAS 120
Query: 121 PRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFL 180
PRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFL
Sbjct: 121 PRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFL 180
Query: 181 ELKEVDAVDEQDVV--REGEAPTPPRGKTSFRRQGRGGGGARAIS----PPPTVCRRG-- 232
EL V+ R G A P G+ +G G A A+S P G
Sbjct: 181 ELPSKCLTSWLWVIAPRPGPAERPFPGE-----KGPPGAAASAVSGSWLPIMLESEAGGT 235
Query: 233 --RGRLGWGGAGGQVQD 247
G+ GW G + D
Sbjct: 236 DAAGQAGWRSPGKSMGD 252
>gi|239745511 PREDICTED: hypothetical protein XP_002343508 [Homo
sapiens]
Length = 427
Score = 488 bits (1256), Expect = e-138
Identities = 238/245 (97%), Positives = 239/245 (97%), Gaps = 4/245 (1%)
Query: 293 LSSWAQLWGEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAG 352
L+SW LW APRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAG
Sbjct: 187 LTSW--LWVI--APRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAG 242
Query: 353 WRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSI 412
WRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSI
Sbjct: 243 WRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSI 302
Query: 413 SELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPL 472
SELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPL
Sbjct: 303 SELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPL 362
Query: 473 SSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSPSS 532
SSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSPSS
Sbjct: 363 SSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSPSS 422
Query: 533 GVVRN 537
GVVRN
Sbjct: 423 GVVRN 427
Score = 369 bits (948), Expect = e-102
Identities = 200/257 (77%), Positives = 206/257 (80%), Gaps = 15/257 (5%)
Query: 1 MASRRGAETRGLRRWGRLAAGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRR 60
MASRRGAETRGLRRWGRLAAGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRR
Sbjct: 1 MASRRGAETRGLRRWGRLAAGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRR 60
Query: 61 RQAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSAS 120
RQAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSAS
Sbjct: 61 RQAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSAS 120
Query: 121 PRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFL 180
PRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFL
Sbjct: 121 PRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFL 180
Query: 181 ELKEVDAVDEQDVV--REGEAPTPPRGKTSFRRQGRGGGGARAIS----PPPTVCRRG-- 232
EL V+ R G A P G+ +G G A A+S P G
Sbjct: 181 ELPSKCLTSWLWVIAPRPGPAERPFPGE-----KGPPGAAASAVSGSWLPIMLESEAGGT 235
Query: 233 --RGRLGWGGAGGQVQD 247
G+ GW G + D
Sbjct: 236 DAAGQAGWRSPGKSMGD 252
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 57.8 bits (138), Expect = 2e-08
Identities = 115/464 (24%), Positives = 154/464 (33%), Gaps = 75/464 (16%)
Query: 84 ACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSASPRLSKASSSSSRCWSRGPTSGLG 143
A AG R P LL P S P +A L A + R P +
Sbjct: 8 AKAGAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVG-----RKPLAERA 62
Query: 144 ATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFLELKEVDAVDEQDVVREGEAPTPP 203
+GG +P +A PR G SRN +R E G +P
Sbjct: 63 GGIGGATIPESA--PRAGPTRSAGTSSRNPASRPPASGRGE--RAPPAKNTSPGPVSSPG 118
Query: 204 RGKTSFRRQGRGGGGARAISPPPTVCRRGRGRLGWGGAGGQVQDVPDTQVSS------DL 257
R + R G G R IS TV R G+ + P S
Sbjct: 119 RASGTTRPGPLGQKGLR-ISAEETVAR------------GKATEAPKRSALSAGARRDTS 165
Query: 258 YPSPYLLVGSPEGLQAEQMAGMGVLGPQVEALAGELSSWAQLWGEGQAPRPGPAERPFPG 317
P+P G+P A + G E PRP P+ RP P
Sbjct: 166 GPTP----GTPSPAMARRSRAAGT--------------------EVGLPRPAPSARPRPP 201
Query: 318 EKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLRP 377
+GP + +SA S A +AG R +S+ +A P L +P R
Sbjct: 202 TEGPRKSVSSASEHS--TTEPSPAARRRPSAGGGLQRPASRSLSSSATP---LSSP-ARS 255
Query: 378 GRGSANQTPGEAFPS-PVSFSAAKLRSDRGGPSWSISELSVDPQGST--VKQIPSSLQSR 434
G + A PS P LR + P + ++ P S+ PS ++R
Sbjct: 256 GPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSGTKAR 315
Query: 435 EVPPTD------APSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKGCSPPPP 488
VPP D +L SPP P P P S P S +LPSP +PP
Sbjct: 316 PVPPPDNAATPLPATLPPSPPLATPLP-------LAPPSPSAPPSLQTLPSPP-ATPPSQ 367
Query: 489 VDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSPSS 532
P + P Q P + +S SL PP+ + SS
Sbjct: 368 APPSMTTPPMQAPPSLQTIPPIQVPHSLTSPSLQAPPSPLALSS 411
Score = 50.1 bits (118), Expect = 5e-06
Identities = 124/495 (25%), Positives = 168/495 (33%), Gaps = 71/495 (14%)
Query: 51 ASRARAWRRRRQAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNS 110
A+RA R G R P P V AA AG R+P L +
Sbjct: 18 AARAPGLLTPRPPGSPR--PPPPVT-PAALRVLGAAGAVGRKP------LAERAGGIGGA 68
Query: 111 KTPCTCMSASPRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLS 170
P + A P S +SS + SR P SG G PPA T + GR
Sbjct: 69 TIPESAPRAGPTRSAGTSSRNPA-SRPPASGRGERA-----PPAKNTSPGPVSSPGRA-- 120
Query: 171 RNSTARRSFLELKEVDAVDEQDVVREGEAPTPPRGKTSFRRQGRGGGGARAISPPPTVCR 230
+ T R L K + E+ V R G+A P+ R G +P P + R
Sbjct: 121 -SGTTRPGPLGQKGLRISAEETVAR-GKATEAPKRSALSAGARRDTSGPTPGTPSPAMAR 178
Query: 231 RGRG---RLGWGGAGGQVQDVPDTQ-----VSSDLYPSPYLLVGSPEGLQAEQMAGMGVL 282
R R +G + P T+ VSS S + + AG G+
Sbjct: 179 RSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSS---ASEHSTTEPSPAARRRPSAGGGLQ 235
Query: 283 GPQVEALAGELSSWAQLWGEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEA 342
P +L+ + + G + R P P + P G A P
Sbjct: 236 RPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPP------- 288
Query: 343 GGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLR 402
DAA G S S +P G+ P + P +A P PSP + L
Sbjct: 289 -RKDAAPALGPLS--SSPLATPSPSGTKARP-VPPPDNAATPLPATLPPSPPLATPLPLA 344
Query: 403 SDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDA-PSLLASPPSGLPRPGTRWFR 461
S+ L P + Q P S+ + PP A PSL PP +P
Sbjct: 345 PPSPSAPPSLQTLP-SPPATPPSQAPPSMTT---PPMQAPPSLQTIPPIQVP-------- 392
Query: 462 SFLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSAAPTS-GSFKNQA---YPTLPNRRWPS 517
HSL SP +PP P+ S A TS GS QA + T+ R+ +
Sbjct: 393 -------------HSLTSPSLQAPPSPLALSSLQATTSLGSPTLQATHSFLTMSPRQTQA 439
Query: 518 SRSLWTPPNRRSPSS 532
S + + P P S
Sbjct: 440 SLTSPSRPASTPPDS 454
Score = 42.0 bits (97), Expect = 0.001
Identities = 134/578 (23%), Positives = 191/578 (33%), Gaps = 87/578 (15%)
Query: 5 RGAETRGLRRWGRLAAGGRAA----ARGSVPQPVKSSPPFRRSARP-----------TDS 49
R A T R A GR A+ + P PV S + RP +
Sbjct: 81 RSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEE 140
Query: 50 LASRARAW----RRRRQAGCLRVV--PRPGVARAAACCACACAGRTNRQPRPFQARLLAA 103
+R +A R AG R P PG A AG PRP
Sbjct: 141 TVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRP-------- 192
Query: 104 VPSASNSKTPCTCMSASPRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLR 163
PSA + P + PR S +S+S P + + GG + PA+R+ L
Sbjct: 193 APSA-RPRPP----TEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRS----LS 243
Query: 164 DRGRLLSRNSTARRSFLELKEVDAVDEQDVVREGEAPTPPRGKTSFRRQGRGGGGARAIS 223
LS + + S A Q + +A PP+ T R+ G + S
Sbjct: 244 SSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQ-VTPPRKDAAPALGPLSSS 302
Query: 224 PPPTVCRRGRGRLGWGGAGGQVQDVPD-----TQVSSDLYPSPYLLVGSPEGLQAEQMAG 278
P T +G + + VP T + + L PSP L P +
Sbjct: 303 PLATP----------SPSGTKARPVPPPDNAATPLPATLPPSPPLATPLPLAPPSPSAPP 352
Query: 279 MGVLGPQVEALAGELSSWAQLWGEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIML 338
P A + + QAP P+ + P + P + ++ P+ L
Sbjct: 353 SLQTLPSPPATPPSQAPPSMTTPPMQAP---PSLQTIPPIQVPHSLTSPSLQAPPSPLAL 409
Query: 339 ESEAGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSA 398
S T + SL +P RP + P +A P+S A
Sbjct: 410 SSLQATTSLGSPTLQATHSFLTMSPRQTQASLTSPS-RPASTPPDSPPLQA---PLSLPA 465
Query: 399 AKLRSDRGGPSWS--ISELSVDPQ---GSTVKQIPSS-LQSREVPPTD-----APSLLAS 447
+ P+ S S L++ P S P + L S +PP + AP L +
Sbjct: 466 SPPLQTSLSPAVSPLSSPLTIHPLQALSSLASHSPQAPLSSLIMPPLETQSSLAPPSLQT 525
Query: 448 PPSGLPRPGTRWFRSFLPRP---HSRPLSSHSLPSPKGCSP------------PPPVDPG 492
PP+ L P S P P S PL++ L +P +P PPP P
Sbjct: 526 PPASLTTPPLENLPSLAPPPLQTASAPLTTPHLETPPCPAPCPLQAPPSPLTTPPPETPS 585
Query: 493 SSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSP 530
S A P + A P L P L TPP + P
Sbjct: 586 SIATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPP 623
Score = 37.4 bits (85), Expect = 0.035
Identities = 48/174 (27%), Positives = 66/174 (37%), Gaps = 23/174 (13%)
Query: 365 APGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGSTV 424
AP +P + P +Q P P+ + S PS + + P +
Sbjct: 675 APFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPP 734
Query: 425 KQIPSS-------LQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSL 477
Q+P S S PP P LLA+PP +P P S P+S +
Sbjct: 735 LQVPPSPPASPPMSPSATPPPRVPP-LLAAPPLQVPP----------SPPASLPMSPLAK 783
Query: 478 PSPKGCSPPPPVDPGSSAAPT-SGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSP 530
P P+ +PP P A P+ SF QA P P+ P S L TPP + P
Sbjct: 784 PPPQ--APPALATPPLQALPSPPASFPGQA-PFSPSASLPMS-PLATPPPQAPP 833
Score = 36.2 bits (82), Expect = 0.078
Identities = 119/532 (22%), Positives = 174/532 (32%), Gaps = 45/532 (8%)
Query: 5 RGAETRGLRRWGRLAAGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRRRQAG 64
RG T +R L+AG R G P P SP R +R + R R
Sbjct: 144 RGKATEAPKR-SALSAGARRDTSG--PTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRP 200
Query: 65 CLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSASPRLS 124
PR V+ A+ + R+P A S S+S TP + + S +
Sbjct: 201 PTEG-PRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSA 259
Query: 125 KASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRN-STARRSFLELK 183
+ + + S+ GL A V PP +D G L S +T S + +
Sbjct: 260 RGTPRAPAHPSQPKPKGLQALRPPQVTPPR----KDAAPALGPLSSSPLATPSPSGTKAR 315
Query: 184 EVDAVDEQDVVREGEAPTPPRGKTSFRRQGRGGGGARAI----SPPPTVCRRGRGRLGWG 239
V D P P T ++ SPP T + +
Sbjct: 316 PVPPPDNAATPLPATLPPSPPLATPLPLAPPSPSAPPSLQTLPSPPATPPSQAPPSMTTP 375
Query: 240 G--AGGQVQDVPDTQVSSDLYPSPYLLVGSPEGLQAEQMAGMGVLGPQVEALAGELS--- 294
A +Q +P QV L SP L + Q A + P ++A L+
Sbjct: 376 PMQAPPSLQTIPPIQVPHSLTSPSLQAPPSPLALSSLQ-ATTSLGSPTLQATHSFLTMSP 434
Query: 295 --SWAQLWGEGQA----PRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAA 348
+ A L + P P + P PP +++S + P+ A
Sbjct: 435 RQTQASLTSPSRPASTPPDSPPLQAPLSLPASPP--LQTSLSPAVSPLSSPLTIHPLQAL 492
Query: 349 GQAGWRSPGKSMGDAAAPG----GSLGNPRLRPGRGSANQTPGEAFPS----PVSFSAAK 400
SP + P SL P L+ S P E PS P+ ++A
Sbjct: 493 SSLASHSPQAPLSSLIMPPLETQSSLAPPSLQTPPASLTTPPLENLPSLAPPPLQTASAP 552
Query: 401 LRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWF 460
L + E P ++ PS L + PP + PS +A+PP P
Sbjct: 553 LTTPH-------LETPPCPAPCPLQAPPSPLTT---PPPETPSSIATPPPQAPPALASPP 602
Query: 461 RSFLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPN 512
LP P PL++ +P + PP P S A S P PN
Sbjct: 603 LQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPPASPPLSPLATPSPQAPN 654
Score = 35.0 bits (79), Expect = 0.17
Identities = 33/113 (29%), Positives = 41/113 (36%), Gaps = 8/113 (7%)
Query: 416 SVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRP--LS 473
S+ P P + E PP AP L +PPS L P S P P L+
Sbjct: 540 SLAPPPLQTASAPLTTPHLETPPCPAPCPLQAPPSPLTTPPPETPSSIATPPPQAPPALA 599
Query: 474 S---HSLPSP---KGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRS 520
S LPSP +PPP P + P A P L PS ++
Sbjct: 600 SPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPPASPPLSPLATPSPQA 652
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 54.7 bits (130), Expect = 2e-07
Identities = 90/345 (26%), Positives = 117/345 (33%), Gaps = 59/345 (17%)
Query: 215 GGGGARAISPPP--TVCRRGRGRLGWGGAGGQVQDVPDT-QVSSDLYPSPYLLVGSPEGL 271
G G + IS PP G +G GG GQ + + D P P G P
Sbjct: 1128 GPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPG-- 1185
Query: 272 QAEQMAGMGVLGPQ-VEALAGELSSWAQLWGEGQAPRPGPAERP----FPGEKGPPGAAA 326
G G GP + L+G+ G PGP P FPG +GPPG
Sbjct: 1186 ----QPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPG 1241
Query: 327 SAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMG--DAAAPGGSLGNPRLRPGRGSANQ 384
S LE G G G P G P G GN ++ +G+ Q
Sbjct: 1242 SPGPA------LEGPKGNPGPQGPPGRPGPTGFQGLPGPEGPPGLPGNGGIKGEKGNPGQ 1295
Query: 385 TPGEAFPSPVSFSAAKLRSDRGGPSW-------SISELSVDPQGSTVKQIPSSLQSREVP 437
P L+ D+G P ++ + DP V P VP
Sbjct: 1296 PGLPGLPG--------LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVP 1347
Query: 438 ----PTDAPSLLASP-PSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKGCSPP------ 486
P P L+ P P GLP P +S + + + P P KG P
Sbjct: 1348 GSAGPEGEPGLIGPPGPPGLPGPSG---QSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGL 1404
Query: 487 -----PPVDPGSSAAP-TSGSFKNQAYPTLPNRRWPSSRSLWTPP 525
PP DPG + P G+ + P LP + P +R L PP
Sbjct: 1405 PGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQ--PGTRGLDGPP 1447
Score = 40.8 bits (94), Expect = 0.003
Identities = 60/244 (24%), Positives = 75/244 (30%), Gaps = 59/244 (24%)
Query: 304 QAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDA 363
Q P+ E+ G GPPG +S PI +E + G G G P G
Sbjct: 223 QGPKGEKGEQGLQGPPGPPGQ----ISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPP 278
Query: 364 AAPGGSLGNP--------RLRPGRGSANQTPG-------EAFPSPVSFSAAK-LRSDRGG 407
PGG G R +PG+ N PG +P K + D G
Sbjct: 279 GPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGP 338
Query: 408 PSWSISELSVDPQGSTVKQ--------IPSSLQSREVPPTDAPSLLASPPS-------GL 452
P + G T+ + +P R P P L PP G
Sbjct: 339 PGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGP 398
Query: 453 PR-PGTRWFRSF----------------------LPRPHSRPLSSHSLPSPKGCSPPPPV 489
P PG R + LP P P H PS + C P PP
Sbjct: 399 PGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPG-PAGPHIPPSDEICEPGPPG 457
Query: 490 DPGS 493
PGS
Sbjct: 458 PPGS 461
Score = 37.7 bits (86), Expect = 0.027
Identities = 99/354 (27%), Positives = 119/354 (33%), Gaps = 70/354 (19%)
Query: 197 GEAPTPPRGKTSF--RRQGRGGGGARAISPPPTVCRRGR-GRLGWGGAGGQVQDVPDTQV 253
G A P G F R +G G IS P G+ G G G G P
Sbjct: 389 GAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAG--PHIPP 446
Query: 254 SSDLY-PSPYLLVGSP--EGLQAEQ------------MAGMGVLGPQ-------VEALAG 291
S ++ P P GSP +GLQ EQ G G+ GP + G
Sbjct: 447 SDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPG 506
Query: 292 ELSSWAQLWGEGQAPRPGPAERP----------FPGEKGPPGAAAS--AVSGSWLPIMLE 339
L Q +GQA GP P FPG KG PG + + G +
Sbjct: 507 SLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGD------K 560
Query: 340 SEAGGTDAAGQAGW-RSPGKS-----MGDAAAPGGSL--------GNPRL--RPGRGSAN 383
E G A G G +PG+ G PGG GNP L PG
Sbjct: 561 GELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPM 620
Query: 384 QTPGEAFPSPVSFSAAK-LRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAP 442
PG P PV + + + G P I DP G T+ Q P P D
Sbjct: 621 GPPGFGPPGPVGEKGIQGVAGNPGQP--GIPGPKGDP-GQTITQ-PGKPGLPGNPGRDGD 676
Query: 443 SLLASPPSGLP-RPGTRWFRSFLPRPHSRPLSSHSLPSPKGCS--PPPPVDPGS 493
L P GLP +PG P + P PKG P PP PG+
Sbjct: 677 VGLPGDP-GLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGT 729
Score = 37.7 bits (86), Expect = 0.027
Identities = 75/281 (26%), Positives = 91/281 (32%), Gaps = 35/281 (12%)
Query: 234 GRLGWGGAGGQVQDVPDTQVSSDLYPSPYLLVGSP--EGLQAEQMAGMGVLGPQVEALAG 291
G+ G G GQ D D +SS P G P G V P + L G
Sbjct: 1051 GQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPG 1110
Query: 292 ELSSWAQLWGEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQA 351
+ +GQ PG FPG GPPG +SG L E G G
Sbjct: 1111 TPGA------KGQPGLPG-----FPGTPGPPG--PKGISGPPGNPGLPGEPGPVGGGGHP 1157
Query: 352 GWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSF-SAAKLRSDRGGPSW 410
G P G+ PG G P +G Q PG P P + + D G P
Sbjct: 1158 GQPGP---PGEKGKPGQD-GIPGPAGQKGEPGQ-PGFGNPGPPGLPGLSGQKGDGGLPGI 1212
Query: 411 SISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSR 470
+ P+G +Q PP +P P G P P P
Sbjct: 1213 PGNPGLPGPKGEPGFHGFPGVQGPPGPP-GSPGPALEGPKGNPGPQG-------PPGRPG 1264
Query: 471 PLSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLP 511
P LP P+G PP PG+ G N P LP
Sbjct: 1265 PTGFQGLPGPEG----PPGLPGNGG--IKGEKGNPGQPGLP 1299
Score = 37.0 bits (84), Expect = 0.046
Identities = 54/201 (26%), Positives = 67/201 (33%), Gaps = 44/201 (21%)
Query: 301 GEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSM 360
G G PGP + FPG GPPGA G+ I LE G G G PG ++
Sbjct: 705 GIGLPGPPGP--KGFPGIPGPPGA-----PGTPGRIGLEGPPGPPGFPGPKG--EPGFAL 755
Query: 361 GDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQ 420
G G P L +G+ FP P GP V P
Sbjct: 756 ------PGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKG-----DVGPN 804
Query: 421 GSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSP 480
G Q + P P + P G P +P P +P H +P
Sbjct: 805 G----------QPGPMGPPGLPGIGVQGPPGPPG---------IPGPIGQP-GLHGIPGE 844
Query: 481 KGCSPPPPVD----PGSSAAP 497
KG PP +D PG +P
Sbjct: 845 KGDPGPPGLDVPGPPGERGSP 865
Score = 33.5 bits (75), Expect = 0.50
Identities = 64/251 (25%), Positives = 79/251 (31%), Gaps = 51/251 (20%)
Query: 302 EGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMG 361
EG PG FPG +GPPG P + + G G G R P G
Sbjct: 56 EGHPGLPG-----FPGPEGPPG-----------PRGQKGDDGIPGPPGPKGIRGPPGLPG 99
Query: 362 DAAAPG-----GSLGNPRLRPGRGSANQTPGE-AFPSPVSFSAAK-------LRSDRGGP 408
PG G G P + G N T GE FP F + + +G P
Sbjct: 100 FPGTPGLPGMPGHDGAPGPQ-GIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEP 158
Query: 409 SWSISELSVDPQGSTVKQIPSSLQSREVP--------PTDAPSLLASP-PSGLPRPGTRW 459
I P+G+ P +Q P P P L+ P P GLP P
Sbjct: 159 GSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNM 218
Query: 460 FRSFLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSR 519
+F + L P P PP P F+ + LP R P
Sbjct: 219 GLNFQGPKGEK--GEQGLQGP----PGPPGQISEQKRPIDVEFQ-KGDQGLPGDRGPPG- 270
Query: 520 SLWTPPNRRSP 530
PP R P
Sbjct: 271 ----PPGIRGP 277
Score = 31.2 bits (69), Expect = 2.5
Identities = 57/206 (27%), Positives = 68/206 (33%), Gaps = 38/206 (18%)
Query: 302 EGQAPRPGPAERP----FPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPG 357
+G PGP P F GE+GPPG L G G G+ PG
Sbjct: 581 DGLPGLPGPKGEPGGITFKGERGPPGNPG-----------LPGLPGNIGPMGPPGFGPPG 629
Query: 358 KSMGDAAAPG--GSLGNPRLRPGRGSANQT---PGE-AFP-SPVSFSAAKLRSDRGGPSW 410
+G+ G G+ G P + +G QT PG+ P +P L D G P
Sbjct: 630 -PVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQ 688
Query: 411 SISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSR 470
L P IP P P + PP PG R L P
Sbjct: 689 --PGLPGIPGSKGEPGIPGIGLPGPPGPKGFPG-IPGPPGAPGTPG----RIGLEGPPGP 741
Query: 471 PLSSHSLPSPKG----CSPPPPVDPG 492
P P PKG P PP PG
Sbjct: 742 P----GFPGPKGEPGFALPGPPGPPG 763
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 54.3 bits (129), Expect = 3e-07
Identities = 89/343 (25%), Positives = 118/343 (34%), Gaps = 58/343 (16%)
Query: 215 GGGGARAISPPP--TVCRRGRGRLGWGGAGGQVQDVPDT-QVSSDLYPSPYLLVGSPEGL 271
G G + IS PP G +G GG GQ + + D P P G P
Sbjct: 1128 GPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPG-- 1185
Query: 272 QAEQMAGMGVLGPQ-VEALAGELSSWAQLWGEGQAPRPGPAERP----FPGEKGPPGAAA 326
G G GP + L+G+ G PGP P FPG +GPPG
Sbjct: 1186 ----QPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPG 1241
Query: 327 SAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTP 386
S LE G G G R + + P G GN ++ +G+ Q
Sbjct: 1242 SPGPA------LEGPKGNPGPQGPPG-RPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPG 1294
Query: 387 GEAFPSPVSFSAAKLRSDRGGPSW-------SISELSVDPQGSTVKQIPSSLQSREVP-- 437
P L+ D+G P ++ + DP V P VP
Sbjct: 1295 LPGLPG--------LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGS 1346
Query: 438 --PTDAPSLLASP-PSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKGCSPP-------- 486
P P L+ P P GLP P +S + + + P P KG P
Sbjct: 1347 AGPEGEPGLIGPPGPPGLPGPSG---QSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPG 1403
Query: 487 ---PPVDPGSSAAP-TSGSFKNQAYPTLPNRRWPSSRSLWTPP 525
PP DPG + P G+ + P LP + P +R L PP
Sbjct: 1404 PTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQ--PGTRGLDGPP 1444
Score = 40.8 bits (94), Expect = 0.003
Identities = 60/244 (24%), Positives = 75/244 (30%), Gaps = 59/244 (24%)
Query: 304 QAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDA 363
Q P+ E+ G GPPG +S PI +E + G G G P G
Sbjct: 223 QGPKGEKGEQGLQGPPGPPGQ----ISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPP 278
Query: 364 AAPGGSLGNP--------RLRPGRGSANQTPG-------EAFPSPVSFSAAK-LRSDRGG 407
PGG G R +PG+ N PG +P K + D G
Sbjct: 279 GPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGP 338
Query: 408 PSWSISELSVDPQGSTVKQ--------IPSSLQSREVPPTDAPSLLASPPS-------GL 452
P + G T+ + +P R P P L PP G
Sbjct: 339 PGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGP 398
Query: 453 PR-PGTRWFRSF----------------------LPRPHSRPLSSHSLPSPKGCSPPPPV 489
P PG R + LP P P H PS + C P PP
Sbjct: 399 PGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPG-PAGPHIPPSDEICEPGPPG 457
Query: 490 DPGS 493
PGS
Sbjct: 458 PPGS 461
Score = 37.7 bits (86), Expect = 0.027
Identities = 99/354 (27%), Positives = 119/354 (33%), Gaps = 70/354 (19%)
Query: 197 GEAPTPPRGKTSF--RRQGRGGGGARAISPPPTVCRRGR-GRLGWGGAGGQVQDVPDTQV 253
G A P G F R +G G IS P G+ G G G G P
Sbjct: 389 GAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAG--PHIPP 446
Query: 254 SSDLY-PSPYLLVGSP--EGLQAEQ------------MAGMGVLGPQ-------VEALAG 291
S ++ P P GSP +GLQ EQ G G+ GP + G
Sbjct: 447 SDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPG 506
Query: 292 ELSSWAQLWGEGQAPRPGPAERP----------FPGEKGPPGAAAS--AVSGSWLPIMLE 339
L Q +GQA GP P FPG KG PG + + G +
Sbjct: 507 SLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGD------K 560
Query: 340 SEAGGTDAAGQAGW-RSPGKS-----MGDAAAPGGSL--------GNPRL--RPGRGSAN 383
E G A G G +PG+ G PGG GNP L PG
Sbjct: 561 GELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPM 620
Query: 384 QTPGEAFPSPVSFSAAK-LRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAP 442
PG P PV + + + G P I DP G T+ Q P P D
Sbjct: 621 GPPGFGPPGPVGEKGIQGVAGNPGQP--GIPGPKGDP-GQTITQ-PGKPGLPGNPGRDGD 676
Query: 443 SLLASPPSGLP-RPGTRWFRSFLPRPHSRPLSSHSLPSPKGCS--PPPPVDPGS 493
L P GLP +PG P + P PKG P PP PG+
Sbjct: 677 VGLPGDP-GLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGT 729
Score = 37.0 bits (84), Expect = 0.046
Identities = 54/201 (26%), Positives = 67/201 (33%), Gaps = 44/201 (21%)
Query: 301 GEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSM 360
G G PGP + FPG GPPGA G+ I LE G G G PG ++
Sbjct: 705 GIGLPGPPGP--KGFPGIPGPPGA-----PGTPGRIGLEGPPGPPGFPGPKG--EPGFAL 755
Query: 361 GDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQ 420
G G P L +G+ FP P GP V P
Sbjct: 756 ------PGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKG-----DVGPN 804
Query: 421 GSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSP 480
G Q + P P + P G P +P P +P H +P
Sbjct: 805 G----------QPGPMGPPGLPGIGVQGPPGPPG---------IPGPIGQP-GLHGIPGE 844
Query: 481 KGCSPPPPVD----PGSSAAP 497
KG PP +D PG +P
Sbjct: 845 KGDPGPPGLDVPGPPGERGSP 865
Score = 37.0 bits (84), Expect = 0.046
Identities = 76/281 (27%), Positives = 92/281 (32%), Gaps = 38/281 (13%)
Query: 234 GRLGWGGAGGQVQDVPDTQVSSDLYPSPYLLVGSP--EGLQAEQMAGMGVLGPQVEALAG 291
G+ G G GQ D D +SS P G P G V P + L G
Sbjct: 1051 GQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPG 1110
Query: 292 ELSSWAQLWGEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQA 351
+ +GQ PG FPG GPPG +SG L E G G
Sbjct: 1111 TPGA------KGQPGLPG-----FPGTPGPPG--PKGISGPPGNPGLPGEPGPVGGGGHP 1157
Query: 352 GWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSF-SAAKLRSDRGGPSW 410
G P G+ PG G P +G Q PG P P + + D G P
Sbjct: 1158 GQPGP---PGEKGKPGQD-GIPGPAGQKGEPGQ-PGFGNPGPPGLPGLSGQKGDGGLPGI 1212
Query: 411 SISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSR 470
+ P+G +Q PP +P P G P P P R
Sbjct: 1213 PGNPGLPGPKGEPGFHGFPGVQGPPGPP-GSPGPALEGPKGNPGP---------QGPPGR 1262
Query: 471 PLSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLP 511
P LP P+G PP PG+ G N P LP
Sbjct: 1263 P-GFQGLPGPEG----PPGLPGNGG--IKGEKGNPGQPGLP 1296
Score = 33.5 bits (75), Expect = 0.50
Identities = 64/251 (25%), Positives = 79/251 (31%), Gaps = 51/251 (20%)
Query: 302 EGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMG 361
EG PG FPG +GPPG P + + G G G R P G
Sbjct: 56 EGHPGLPG-----FPGPEGPPG-----------PRGQKGDDGIPGPPGPKGIRGPPGLPG 99
Query: 362 DAAAPG-----GSLGNPRLRPGRGSANQTPGE-AFPSPVSFSAAK-------LRSDRGGP 408
PG G G P + G N T GE FP F + + +G P
Sbjct: 100 FPGTPGLPGMPGHDGAPGPQ-GIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEP 158
Query: 409 SWSISELSVDPQGSTVKQIPSSLQSREVP--------PTDAPSLLASP-PSGLPRPGTRW 459
I P+G+ P +Q P P P L+ P P GLP P
Sbjct: 159 GSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNM 218
Query: 460 FRSFLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSR 519
+F + L P P PP P F+ + LP R P
Sbjct: 219 GLNFQGPKGEK--GEQGLQGP----PGPPGQISEQKRPIDVEFQ-KGDQGLPGDRGPPG- 270
Query: 520 SLWTPPNRRSP 530
PP R P
Sbjct: 271 ----PPGIRGP 277
Score = 31.2 bits (69), Expect = 2.5
Identities = 57/206 (27%), Positives = 68/206 (33%), Gaps = 38/206 (18%)
Query: 302 EGQAPRPGPAERP----FPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPG 357
+G PGP P F GE+GPPG L G G G+ PG
Sbjct: 581 DGLPGLPGPKGEPGGITFKGERGPPGNPG-----------LPGLPGNIGPMGPPGFGPPG 629
Query: 358 KSMGDAAAPG--GSLGNPRLRPGRGSANQT---PGE-AFP-SPVSFSAAKLRSDRGGPSW 410
+G+ G G+ G P + +G QT PG+ P +P L D G P
Sbjct: 630 -PVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQ 688
Query: 411 SISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSR 470
L P IP P P + PP PG R L P
Sbjct: 689 --PGLPGIPGSKGEPGIPGIGLPGPPGPKGFPG-IPGPPGAPGTPG----RIGLEGPPGP 741
Query: 471 PLSSHSLPSPKG----CSPPPPVDPG 492
P P PKG P PP PG
Sbjct: 742 P----GFPGPKGEPGFALPGPPGPPG 763
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 53.5 bits (127), Expect = 5e-07
Identities = 90/343 (26%), Positives = 118/343 (34%), Gaps = 61/343 (17%)
Query: 215 GGGGARAISPPP--TVCRRGRGRLGWGGAGGQVQDVPDT-QVSSDLYPSPYLLVGSPEGL 271
G G + IS PP G +G GG GQ + + D P P G P
Sbjct: 1128 GPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPG-- 1185
Query: 272 QAEQMAGMGVLGPQ-VEALAGELSSWAQLWGEGQAPRPGPAERP----FPGEKGPPGAAA 326
G G GP + L+G+ G PGP P FPG +GPPG
Sbjct: 1186 ----QPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPG 1241
Query: 327 SAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTP 386
S LE G G G PG + P G GN ++ +G+ Q
Sbjct: 1242 SPGPA------LEGPKGNPGPQGPPG--RPG--LPGPEGPPGLPGNGGIKGEKGNPGQPG 1291
Query: 387 GEAFPSPVSFSAAKLRSDRGGPSW-------SISELSVDPQGSTVKQIPSSLQSREVP-- 437
P L+ D+G P ++ + DP V P VP
Sbjct: 1292 LPGLPG--------LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGS 1343
Query: 438 --PTDAPSLLASP-PSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKGCSPP-------- 486
P P L+ P P GLP P +S + + + P P KG P
Sbjct: 1344 AGPEGEPGLIGPPGPPGLPGPSG---QSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPG 1400
Query: 487 ---PPVDPGSSAAP-TSGSFKNQAYPTLPNRRWPSSRSLWTPP 525
PP DPG + P G+ + P LP + P +R L PP
Sbjct: 1401 PTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQ--PGTRGLDGPP 1441
Score = 40.8 bits (94), Expect = 0.003
Identities = 60/244 (24%), Positives = 75/244 (30%), Gaps = 59/244 (24%)
Query: 304 QAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDA 363
Q P+ E+ G GPPG +S PI +E + G G G P G
Sbjct: 223 QGPKGEKGEQGLQGPPGPPGQ----ISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPP 278
Query: 364 AAPGGSLGNP--------RLRPGRGSANQTPG-------EAFPSPVSFSAAK-LRSDRGG 407
PGG G R +PG+ N PG +P K + D G
Sbjct: 279 GPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGP 338
Query: 408 PSWSISELSVDPQGSTVKQ--------IPSSLQSREVPPTDAPSLLASPPS-------GL 452
P + G T+ + +P R P P L PP G
Sbjct: 339 PGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGP 398
Query: 453 PR-PGTRWFRSF----------------------LPRPHSRPLSSHSLPSPKGCSPPPPV 489
P PG R + LP P P H PS + C P PP
Sbjct: 399 PGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPG-PAGPHIPPSDEICEPGPPG 457
Query: 490 DPGS 493
PGS
Sbjct: 458 PPGS 461
Score = 37.7 bits (86), Expect = 0.027
Identities = 99/354 (27%), Positives = 119/354 (33%), Gaps = 70/354 (19%)
Query: 197 GEAPTPPRGKTSF--RRQGRGGGGARAISPPPTVCRRGR-GRLGWGGAGGQVQDVPDTQV 253
G A P G F R +G G IS P G+ G G G G P
Sbjct: 389 GAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAG--PHIPP 446
Query: 254 SSDLY-PSPYLLVGSP--EGLQAEQ------------MAGMGVLGPQ-------VEALAG 291
S ++ P P GSP +GLQ EQ G G+ GP + G
Sbjct: 447 SDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPG 506
Query: 292 ELSSWAQLWGEGQAPRPGPAERP----------FPGEKGPPGAAAS--AVSGSWLPIMLE 339
L Q +GQA GP P FPG KG PG + + G +
Sbjct: 507 SLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGD------K 560
Query: 340 SEAGGTDAAGQAGW-RSPGKS-----MGDAAAPGGSL--------GNPRL--RPGRGSAN 383
E G A G G +PG+ G PGG GNP L PG
Sbjct: 561 GELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPM 620
Query: 384 QTPGEAFPSPVSFSAAK-LRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAP 442
PG P PV + + + G P I DP G T+ Q P P D
Sbjct: 621 GPPGFGPPGPVGEKGIQGVAGNPGQP--GIPGPKGDP-GQTITQ-PGKPGLPGNPGRDGD 676
Query: 443 SLLASPPSGLP-RPGTRWFRSFLPRPHSRPLSSHSLPSPKGCS--PPPPVDPGS 493
L P GLP +PG P + P PKG P PP PG+
Sbjct: 677 VGLPGDP-GLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGT 729
Score = 37.0 bits (84), Expect = 0.046
Identities = 54/201 (26%), Positives = 67/201 (33%), Gaps = 44/201 (21%)
Query: 301 GEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSM 360
G G PGP + FPG GPPGA G+ I LE G G G PG ++
Sbjct: 705 GIGLPGPPGP--KGFPGIPGPPGA-----PGTPGRIGLEGPPGPPGFPGPKG--EPGFAL 755
Query: 361 GDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQ 420
G G P L +G+ FP P GP V P
Sbjct: 756 ------PGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKG-----DVGPN 804
Query: 421 GSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSP 480
G Q + P P + P G P +P P +P H +P
Sbjct: 805 G----------QPGPMGPPGLPGIGVQGPPGPPG---------IPGPIGQP-GLHGIPGE 844
Query: 481 KGCSPPPPVD----PGSSAAP 497
KG PP +D PG +P
Sbjct: 845 KGDPGPPGLDVPGPPGERGSP 865
Score = 36.6 bits (83), Expect = 0.059
Identities = 76/281 (27%), Positives = 92/281 (32%), Gaps = 41/281 (14%)
Query: 234 GRLGWGGAGGQVQDVPDTQVSSDLYPSPYLLVGSP--EGLQAEQMAGMGVLGPQVEALAG 291
G+ G G GQ D D +SS P G P G V P + L G
Sbjct: 1051 GQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPG 1110
Query: 292 ELSSWAQLWGEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQA 351
+ +GQ PG FPG GPPG +SG L E G G
Sbjct: 1111 TPGA------KGQPGLPG-----FPGTPGPPG--PKGISGPPGNPGLPGEPGPVGGGGHP 1157
Query: 352 GWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSF-SAAKLRSDRGGPSW 410
G P G+ PG G P +G Q PG P P + + D G P
Sbjct: 1158 GQPGP---PGEKGKPGQD-GIPGPAGQKGEPGQ-PGFGNPGPPGLPGLSGQKGDGGLPGI 1212
Query: 411 SISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSR 470
+ P+G +Q PP +P P G P P P R
Sbjct: 1213 PGNPGLPGPKGEPGFHGFPGVQGPPGPP-GSPGPALEGPKGNPGP---------QGPPGR 1262
Query: 471 PLSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLP 511
P LP P+G PP PG+ G N P LP
Sbjct: 1263 P----GLPGPEG----PPGLPGNGG--IKGEKGNPGQPGLP 1293
Score = 33.5 bits (75), Expect = 0.50
Identities = 64/251 (25%), Positives = 79/251 (31%), Gaps = 51/251 (20%)
Query: 302 EGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMG 361
EG PG FPG +GPPG P + + G G G R P G
Sbjct: 56 EGHPGLPG-----FPGPEGPPG-----------PRGQKGDDGIPGPPGPKGIRGPPGLPG 99
Query: 362 DAAAPG-----GSLGNPRLRPGRGSANQTPGE-AFPSPVSFSAAK-------LRSDRGGP 408
PG G G P + G N T GE FP F + + +G P
Sbjct: 100 FPGTPGLPGMPGHDGAPGPQ-GIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEP 158
Query: 409 SWSISELSVDPQGSTVKQIPSSLQSREVP--------PTDAPSLLASP-PSGLPRPGTRW 459
I P+G+ P +Q P P P L+ P P GLP P
Sbjct: 159 GSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNM 218
Query: 460 FRSFLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSR 519
+F + L P P PP P F+ + LP R P
Sbjct: 219 GLNFQGPKGEK--GEQGLQGP----PGPPGQISEQKRPIDVEFQ-KGDQGLPGDRGPPG- 270
Query: 520 SLWTPPNRRSP 530
PP R P
Sbjct: 271 ----PPGIRGP 277
Score = 31.2 bits (69), Expect = 2.5
Identities = 57/206 (27%), Positives = 68/206 (33%), Gaps = 38/206 (18%)
Query: 302 EGQAPRPGPAERP----FPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPG 357
+G PGP P F GE+GPPG L G G G+ PG
Sbjct: 581 DGLPGLPGPKGEPGGITFKGERGPPGNPG-----------LPGLPGNIGPMGPPGFGPPG 629
Query: 358 KSMGDAAAPG--GSLGNPRLRPGRGSANQT---PGE-AFP-SPVSFSAAKLRSDRGGPSW 410
+G+ G G+ G P + +G QT PG+ P +P L D G P
Sbjct: 630 -PVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQ 688
Query: 411 SISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSR 470
L P IP P P + PP PG R L P
Sbjct: 689 --PGLPGIPGSKGEPGIPGIGLPGPPGPKGFPG-IPGPPGAPGTPG----RIGLEGPPGP 741
Query: 471 PLSSHSLPSPKG----CSPPPPVDPG 492
P P PKG P PP PG
Sbjct: 742 P----GFPGPKGEPGFALPGPPGPPG 763
>gi|38787970 tensin like C1 domain containing phosphatase isoform 3
[Homo sapiens]
Length = 1285
Score = 52.4 bits (124), Expect = 1e-06
Identities = 68/262 (25%), Positives = 98/262 (37%), Gaps = 39/262 (14%)
Query: 288 ALAGELSSWAQL----WGEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAG 343
A AG L+S L W EG + P + P +A+S +SG P+ S
Sbjct: 740 ASAGPLASAESLEPVSWREGPSGHSTLPRSP----RDAPCSASSELSGPSTPLHTSSPVQ 795
Query: 344 GTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRS 403
G ++ + RSP + +PG +L P + G G A + P + P P++ S
Sbjct: 796 GKESTRRQDTRSPTSAPTQRLSPGEAL-PPVSQAGTGKAPELPSGSGPEPLAPSPV---- 850
Query: 404 DRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSF 463
P++ S S PQ + R PT P L +P G PR
Sbjct: 851 ---SPTFPPSSPSDWPQERSPGGHSDGASPRSPVPTTLPGLRHAPWQG-PR--------- 897
Query: 464 LPRPHSRPLSSHSLPSPKG-----CSPPPPVDPGSSAAPTSGSFKNQ--AYPTLPNRR-- 514
P P S P P SP PP + A P + S+ + P LP +R
Sbjct: 898 --GPPDSPDGSPLTPVPSQMPWLVASPEPPQSSPTPAFPLAASYDTNGLSQPPLPEKRHL 955
Query: 515 -WPSSR-SLWTPPNRRSPSSGV 534
P + W P SP+ G+
Sbjct: 956 PGPGQQPGPWGPEQASSPARGI 977
>gi|38787957 tensin like C1 domain containing phosphatase isoform 2
[Homo sapiens]
Length = 1409
Score = 52.4 bits (124), Expect = 1e-06
Identities = 68/262 (25%), Positives = 98/262 (37%), Gaps = 39/262 (14%)
Query: 288 ALAGELSSWAQL----WGEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAG 343
A AG L+S L W EG + P + P +A+S +SG P+ S
Sbjct: 864 ASAGPLASAESLEPVSWREGPSGHSTLPRSP----RDAPCSASSELSGPSTPLHTSSPVQ 919
Query: 344 GTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRS 403
G ++ + RSP + +PG +L P + G G A + P + P P++ S
Sbjct: 920 GKESTRRQDTRSPTSAPTQRLSPGEAL-PPVSQAGTGKAPELPSGSGPEPLAPSPV---- 974
Query: 404 DRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSF 463
P++ S S PQ + R PT P L +P G PR
Sbjct: 975 ---SPTFPPSSPSDWPQERSPGGHSDGASPRSPVPTTLPGLRHAPWQG-PR--------- 1021
Query: 464 LPRPHSRPLSSHSLPSPKG-----CSPPPPVDPGSSAAPTSGSFKNQ--AYPTLPNRR-- 514
P P S P P SP PP + A P + S+ + P LP +R
Sbjct: 1022 --GPPDSPDGSPLTPVPSQMPWLVASPEPPQSSPTPAFPLAASYDTNGLSQPPLPEKRHL 1079
Query: 515 -WPSSR-SLWTPPNRRSPSSGV 534
P + W P SP+ G+
Sbjct: 1080 PGPGQQPGPWGPEQASSPARGI 1101
>gi|38787941 tensin like C1 domain containing phosphatase isoform 1
[Homo sapiens]
Length = 1419
Score = 52.4 bits (124), Expect = 1e-06
Identities = 68/262 (25%), Positives = 98/262 (37%), Gaps = 39/262 (14%)
Query: 288 ALAGELSSWAQL----WGEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAG 343
A AG L+S L W EG + P + P +A+S +SG P+ S
Sbjct: 874 ASAGPLASAESLEPVSWREGPSGHSTLPRSP----RDAPCSASSELSGPSTPLHTSSPVQ 929
Query: 344 GTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRS 403
G ++ + RSP + +PG +L P + G G A + P + P P++ S
Sbjct: 930 GKESTRRQDTRSPTSAPTQRLSPGEAL-PPVSQAGTGKAPELPSGSGPEPLAPSPV---- 984
Query: 404 DRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSF 463
P++ S S PQ + R PT P L +P G PR
Sbjct: 985 ---SPTFPPSSPSDWPQERSPGGHSDGASPRSPVPTTLPGLRHAPWQG-PR--------- 1031
Query: 464 LPRPHSRPLSSHSLPSPKG-----CSPPPPVDPGSSAAPTSGSFKNQ--AYPTLPNRR-- 514
P P S P P SP PP + A P + S+ + P LP +R
Sbjct: 1032 --GPPDSPDGSPLTPVPSQMPWLVASPEPPQSSPTPAFPLAASYDTNGLSQPPLPEKRHL 1089
Query: 515 -WPSSR-SLWTPPNRRSPSSGV 534
P + W P SP+ G+
Sbjct: 1090 PGPGQQPGPWGPEQASSPARGI 1111
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 52.0 bits (123), Expect = 1e-06
Identities = 129/513 (25%), Positives = 174/513 (33%), Gaps = 59/513 (11%)
Query: 51 ASRARAWRRRRQAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNS 110
A+RA R G R P P V AA AG R+P L +
Sbjct: 18 AARAPGLLTPRPPGSPR--PPPPVT-PAALRVLGAAGAVGRKP------LAERAGGIGGA 68
Query: 111 KTPCTCMSASPRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLS 170
P + A P S +SS + SR P SG G PPA T + GR
Sbjct: 69 TIPESAPRAGPTRSAGTSSRNPA-SRPPASGRGERA-----PPAKNTSPGPVSSPGRA-- 120
Query: 171 RNSTARRSFLELKEVDAVDEQDVVREGEAPTPPRGKTSFRRQGRGGGGARAISPPPTVCR 230
+ T R L K + E+ V R G+A P+ R G +P P + R
Sbjct: 121 -SGTTRPGPLGQKGLRISAEETVAR-GKATEAPKRSALSAGARRDTSGPTPGTPSPAMAR 178
Query: 231 RGRG---RLGWGGAGGQVQDVPDTQ-----VSSDLYPSPYLLVGSPEGLQAEQMAGMGVL 282
R R +G + P T+ VSS S + + AG G+
Sbjct: 179 RSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSS---ASEHSTTEPSPAARRRPSAGGGLQ 235
Query: 283 GPQVEALAGELSSWAQLWGEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEA 342
P +L+ + + G + R P P + P G A P + A
Sbjct: 236 RPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPA 295
Query: 343 GGTDAAGQAGWRSPGKSMGDAAAP-----------GGSLGNP-RLRPGRGSANQTPGEAF 390
G ++ SP ++ A P L P L P SA + +
Sbjct: 296 LGPLSSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQLATPLPLAPPSPSAPPSL-QTL 354
Query: 391 PSPVSFSAAKLRSDRGGPSWSI--SELSVDPQGSTVKQIPSSLQSREVPPTDA-PSLLAS 447
PSP + ++ + G P+ S L P P + + +PP A PS AS
Sbjct: 355 PSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPAS 414
Query: 448 PP-SGLPRPGTRWFRS----FLPRPHSRPLSSHSLPSPKGCSPP--PPVDPGS---SAAP 497
PP S L P + + L P S P S P SPP PPV P + S AP
Sbjct: 415 PPLSPLATPSPQAPNALAVHLLQAPFSPPPSP---PVQAPFSPPASPPVSPSATPPSQAP 471
Query: 498 TSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSP 530
S + P P P S S PP P
Sbjct: 472 PSLAAPPLQVPPSPPASPPMSPSATPPPQAPPP 504
Score = 42.7 bits (99), Expect = 8e-04
Identities = 63/235 (26%), Positives = 83/235 (35%), Gaps = 25/235 (10%)
Query: 306 PRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAA 365
PRP + RP P P AA V G+ + + A G A G +
Sbjct: 27 PRPPGSPRPPP----PVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRS 82
Query: 366 PGGSLGNPRLRP---GRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGS 422
G S NP RP GRG P PVS + R GP L
Sbjct: 83 AGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGP------LGQKGLRI 136
Query: 423 TVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRP----HSRPLSSH-SL 477
+ ++ + ++ E P A S A + P PGT P P SR + L
Sbjct: 137 SAEETVARGKATEAPKRSALSAGARRDTSGPTPGT-------PSPAMARRSRAAGTEVGL 189
Query: 478 PSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSPSS 532
P P + P P G + +S S + P+ RR PS+ P RS SS
Sbjct: 190 PRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSS 244
Score = 32.3 bits (72), Expect = 1.1
Identities = 48/169 (28%), Positives = 58/169 (34%), Gaps = 35/169 (20%)
Query: 393 PVSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGL 452
PVS SA + PS + L V P + S PP AP LA+PP L
Sbjct: 459 PVSPSATP--PSQAPPSLAAPPLQVPPSPPASPPMSPSA----TPPPQAPPPLAAPPLQL 512
Query: 453 PRP--------GTRWFRSFLPRPHSRP-----LSSHSLPSPKGCSPPPPVDPGSSAAPTS 499
+P T ++ P S P S SLP +PPP P +A
Sbjct: 513 AKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQ 572
Query: 500 GSFKNQAYPTLPNRRWPSSRSLWT----------------PPNRRSPSS 532
A PTL R P + T PP RSPSS
Sbjct: 573 VPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSS 621
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 51.6 bits (122), Expect = 2e-06
Identities = 60/216 (27%), Positives = 79/216 (36%), Gaps = 15/216 (6%)
Query: 306 PRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAA 365
PRP P+ RP P +GP + +SA S A +AG R +S+ +A
Sbjct: 181 PRPAPSARPRPPTEGPRKSVSSASEHSTTEP--SPAARRRPSAGGGLQRPASRSLSSSAT 238
Query: 366 PGGS--------LGNPRLRPGRGSANQTPG-EAFPSPVSFSAAKLRSDRGGPSWSISELS 416
P S G PR P S + G +A P K + GP S +
Sbjct: 239 PLSSPARSGPSARGTPRA-PAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLAT 297
Query: 417 VDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHS 476
P P SLQ+ PP PS + L P + SFLP P PL++
Sbjct: 298 PSPSAPPSPSAPPSLQTLPSPPATPPS---QATTSLGSPTLQATHSFLPSPPLSPLATPP 354
Query: 477 LPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPN 512
+P + PP P S A S P PN
Sbjct: 355 PQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPN 390
Score = 49.7 bits (117), Expect = 7e-06
Identities = 67/243 (27%), Positives = 87/243 (35%), Gaps = 26/243 (10%)
Query: 305 APRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAA 364
APR GP P G A A + S P+ A GT G G + S +
Sbjct: 74 APRAGPTRTSRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETV 133
Query: 365 APGGSLGNPR---LRPG--RGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDP 419
A G + P+ L G R ++ TPG P+ S A ++ G P + S P
Sbjct: 134 ARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRA-AGTEVGLPRPAPSARPRPP 192
Query: 420 QGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSS----- 474
K + S+ + P+ A S GL RP +R S P S P S
Sbjct: 193 TEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSS-SATPLSSPARSGPSAR 251
Query: 475 --------HSLPSPKGCS---PPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWT 523
S P PKG PP P AAP G + T P+ P S S
Sbjct: 252 GTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLAT-PSPSAPPSPS--A 308
Query: 524 PPN 526
PP+
Sbjct: 309 PPS 311
Score = 46.6 bits (109), Expect = 6e-05
Identities = 100/411 (24%), Positives = 136/411 (33%), Gaps = 43/411 (10%)
Query: 135 SRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFLELKEVDAVDEQDVV 194
SR P SG G PPA T + GR + T R L K + E+ V
Sbjct: 83 SRPPASGRGERA-----PPAKNTSPGPVSSPGRA---SGTTRPGPLGQKGLRISAEETVA 134
Query: 195 REGEAPTPPRGKTSFRRQGRGGGGARAISPPPTVCRRGRG---RLGWGGAGGQVQDVPDT 251
R G+A P+ R G +P P + RR R +G + P T
Sbjct: 135 R-GKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPT 193
Query: 252 Q-----VSSDLYPSPYLLVGSPEGLQAEQMAGMGVLGPQVEALAGELSSWAQLWGEGQAP 306
+ VSS S + + AG G+ P +L+ + + G +
Sbjct: 194 EGPRKSVSS---ASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSA 250
Query: 307 RPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAP 366
R P P + P G A P + A G ++ SP +A P
Sbjct: 251 RGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSPSAPP 310
Query: 367 G-GSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGSTVK 425
+L +P P + + SF PS +S L+ P +
Sbjct: 311 SLQTLPSPPATPPSQATTSLGSPTLQATHSFL----------PSPPLSPLATPPPQAPPA 360
Query: 426 QIPSSLQSREVPPTDAP-SLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKGCS 484
LQ+ PP P S LA+P P+ L P S P S P S
Sbjct: 361 LALPPLQAPPSPPASPPLSPLATPS---PQAPNALAVHLLQAPFSPPPSP---PVQAPFS 414
Query: 485 PP--PPVDPGS---SAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSP 530
PP PPV P + S AP S + P P P S S PP P
Sbjct: 415 PPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPP 465
Score = 35.0 bits (79), Expect = 0.17
Identities = 128/569 (22%), Positives = 174/569 (30%), Gaps = 104/569 (18%)
Query: 20 AGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRR---------RQAGCLRVVP 70
AGG A ++P+ + P R S P RA + R +G R P
Sbjct: 62 AGGIGGA--TIPESAPRAGPTRTSRPPASGRGERAPPAKNTSPGPVSSPGRASGTTR--P 117
Query: 71 RPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSASPRLSKASSS- 129
P + A R P ++ L A ++ TP T A R S+A+ +
Sbjct: 118 GPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTE 177
Query: 130 ------SSRCWSRGPTSG-----LGATLGGTVLP-PAARTPRDGLRDRGRLLSRNSTARR 177
+ R PT G A+ T P PAAR R SR+ ++
Sbjct: 178 VGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSA 237
Query: 178 SFLELKEVDAVDEQDVVREGEAPTPPRGKTSFRRQGRGGGGARAISPPPTVCRR--GRGR 235
+ L + R P+ P+ K G +A+ PP R
Sbjct: 238 TPLSSPARSGPSARGTPRAPAHPSQPKPK-----------GLQALRPPQVTPPRKDAAPA 286
Query: 236 LGWGGAGGQVQDVPDTQVSSDLYPSPYLLVGSPEGLQAEQMAGMGVLGPQVEALAGELSS 295
LG + P S PS L P ++ +G P ++A L S
Sbjct: 287 LGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTSLG--SPTLQATHSFLPS 344
Query: 296 WAQLWGEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAG---QAG 352
L P P P + PP AS P+ S A QA
Sbjct: 345 -PPLSPLATPPPQAPPALALPPLQAPPSPPASPPLS---PLATPSPQAPNALAVHLLQAP 400
Query: 353 WRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSI 412
+ P AP +P + P +Q P PS +
Sbjct: 401 FSPPPSP--PVQAPFSPPASPPVSPSATPPSQAP---------------------PSLAA 437
Query: 413 SELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRP--------GTRWFRSFL 464
L V P + S PP AP LA+PP L +P T ++
Sbjct: 438 PPLQVPPSPPASPPMSPSA----TPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALP 493
Query: 465 PRPHSRP-----LSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSR 519
P S P S SLP +PPP P +A A PTL R P +
Sbjct: 494 SPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTP 553
Query: 520 SLWT----------------PPNRRSPSS 532
T PP RSPSS
Sbjct: 554 GPDTSVSGPRLTLALAPGPPPPPSRSPSS 582
Score = 34.7 bits (78), Expect = 0.23
Identities = 62/243 (25%), Positives = 83/243 (34%), Gaps = 50/243 (20%)
Query: 306 PRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGT------DAAGQAG----WRS 355
PRP + RP P P +G+ L AGG ++A +AG R
Sbjct: 27 PRPPGSPRP-PPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRTSRP 85
Query: 356 PGKSMGDAAAPGGSLG-NPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISE 414
P G+ A P + P PGR S PG + SA + + RG
Sbjct: 86 PASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVA-RG-------- 136
Query: 415 LSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRP----HSR 470
++ E P A S A + P PGT P P SR
Sbjct: 137 -----------------KATEAPKRSALSAGARRDTSGPTPGT-------PSPAMARRSR 172
Query: 471 PLSSH-SLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRS 529
+ LP P + P P G + +S S + P+ RR PS+ P RS
Sbjct: 173 AAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRS 232
Query: 530 PSS 532
SS
Sbjct: 233 LSS 235
>gi|7662236 TSC22 domain family, member 2 [Homo sapiens]
Length = 780
Score = 50.8 bits (120), Expect = 3e-06
Identities = 105/435 (24%), Positives = 154/435 (35%), Gaps = 70/435 (16%)
Query: 115 TCMSASPRLSKAS--SSSSRCWSRGPT--------SGLGATLGGTVLPPA----ARTPRD 160
TCM R S +S + S C T SGLGAT G V+ A A P
Sbjct: 181 TCMEYYERDSDSSVLTRSGDCIRHSSTFDQTAERDSGLGATGGSVVVVVASMQGAHGPES 240
Query: 161 GLRDRGRLLSRNSTARRSFLELKEVDAVDEQDVVREGEAPTPPRGKTSFRRQGR--GGGG 218
G +S+ + + + A + V + + P PP G + G
Sbjct: 241 GTDSSLTAVSQLPPSEKMS---QPTPAQPQSFSVGQPQPPPPPVGGAVAQSSAPLPPFPG 297
Query: 219 ARAISPPPTVCRRGRGRLGWGGAGGQV---QDVPDTQVSSDLYPSPYLLVGSPEGLQAEQ 275
A A P P + + G GGQ +V Q + L P P VG+P Q +Q
Sbjct: 298 A-ATGPQPMMAAAQPSQPQGAGPGGQTLPPTNVTLAQPAMSLPPQPGPAVGAPAAQQPQQ 356
Query: 276 MAGMGVLGPQVEALAGELSSWAQLWGEGQAPRPGPA--ERPFPGEKGPPGAAASAVSGSW 333
A PQ + G L Q G+ + + A + P P + GAAAS + +
Sbjct: 357 FAY-----PQPQIPPGHLLP-VQPSGQSEYLQQHVAGLQPPSPAQPSSTGAAASPATAAT 410
Query: 334 LPIMLESEAGGTDAAGQAGWRSPGKSM--------GDAAAPGGSLGNPR------LRPGR 379
LP+ A A P ++M G AP G P ++P
Sbjct: 411 LPVGTGQNASSVGAQLMGASSQPSEAMAPRTGPAQGGQVAPCQPTGVPPATVGGVVQPCL 470
Query: 380 GSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPT 439
G A ++ P P + L + GGP +V P V +P+++ + VP
Sbjct: 471 GPAGAGQPQSVPPPQMGGSGPLSAVPGGPH------AVVP---GVPNVPAAVPAPSVPSV 521
Query: 440 DAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSAAPTS 499
S + P P ++ S P S + H P+ PG+ +APTS
Sbjct: 522 STTS-VTMPNVPAPLAQSQQLSSHTPVSRSSSIIQH---------VGLPLAPGTHSAPTS 571
Query: 500 ------GSFKNQAYP 508
F+ Q P
Sbjct: 572 LPQSDLSQFQTQTQP 586
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 50.4 bits (119), Expect = 4e-06
Identities = 59/239 (24%), Positives = 85/239 (35%), Gaps = 23/239 (9%)
Query: 305 APRPGPAERPF---PGEKGP-----PGAAASAVSGSWLPIMLESEAGGTDAAG--QAGWR 354
AP P R F PG P PG +SG P M G + G G +
Sbjct: 196 APMEPPTSRMFQAPPGAPPPHPQLYPGGTGGVLSG---PPMGPKGGGAASSVGGPNGGKQ 252
Query: 355 SPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISE 414
P + + + G+ G P +P + P P +F ++
Sbjct: 253 HPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNN 312
Query: 415 LSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSS 474
S P G + +P L S P + GLP PG + P PHS P +S
Sbjct: 313 ASASPPGLGAQPLPGHLPS--------PHAMGQGMGGLP-PGPEKGPTLAPSPHSLPPAS 363
Query: 475 HSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLP-NRRWPSSRSLWTPPNRRSPSS 532
S P+P P S+AA +S S + + P ++ PS + PP S S+
Sbjct: 364 SSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSFPPPTSLSVSN 422
Score = 47.8 bits (112), Expect = 3e-05
Identities = 101/441 (22%), Positives = 152/441 (34%), Gaps = 69/441 (15%)
Query: 77 AAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSAS---PRLSKASSSSSRC 133
+++ A + + ++ PF A A+PS +S P T +S S P+ ++ S S
Sbjct: 380 SSSAAASSSSSSSSSSASPFPAS--QALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAV 437
Query: 134 WSRG--PTSGLGATLGGTVLPPAARTPRDGLRDRGR--LLSRNSTARRSFLELKEVDAVD 189
WS+G P G L + P P G + + + + ++ + ++
Sbjct: 438 WSQGPPPPPPYGRLLANSNAHPGPFPPSTGAQSTAHPPVSTHHHHHQQQQQQQQQQQQQQ 497
Query: 190 EQDVVREGEAPTPPRGKTSFRRQGRGGGGARAISPPPTVCRRGRGRLGWGGAGGQVQDVP 249
+Q G + PP G +G A + P++ G ++ P
Sbjct: 498 QQQQQHHGNSGPPPPGAFPHPLEGGSSHHAHPYAMSPSL--------------GSLRPYP 543
Query: 250 DTQVSSDLYPSPYLLVGSPEGLQAEQMAGMGVLGPQVEALAGELSSWAQLWGEGQAPRP- 308
P P L P + G GP V + + SS +Q P P
Sbjct: 544 ---------PGPAHL---PPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPS 591
Query: 309 -GPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPG 367
GP P+P P +SA + + + S AG A+ PG AP
Sbjct: 592 QGPQGAPYPFPPVPTVTTSSATLSTVIATVASSPAGYKTAS------PPGPPPYGKRAPS 645
Query: 368 GSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRG-----GP-SWSISELSVDPQG 421
PG PG SP SF RG GP ++ +V P G
Sbjct: 646 ---------PGAYKTATPPGYKPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVGP-G 695
Query: 422 STVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPK 481
PS L S PP A+P SG P T+ + + P S +P +
Sbjct: 696 PLPPAGPSGLPSLPPPP-------AAPASGPPLSATQ-IKQEPAEEYETPES--PVPPAR 745
Query: 482 GCSPPPPVDPGSSAAPTSGSF 502
SPPP V S A S F
Sbjct: 746 SPSPPPKVVDVPSHASQSARF 766
Score = 34.7 bits (78), Expect = 0.23
Identities = 77/289 (26%), Positives = 95/289 (32%), Gaps = 43/289 (14%)
Query: 216 GGGARAISPPPTVCRRGRGRLGWGGAGGQVQDVPDTQVSSDLYPSPYLLVGSPEGLQAEQ 275
GG +S PP + G GG G Q P T + + S G+P
Sbjct: 222 GGTGGVLSGPPMGPKGGGAASSVGGPNGGKQHPPPT---TPISVSSSGASGAPPTKPPTT 278
Query: 276 MAGMGVLGPQVEALAGELSSWAQLWGEGQAPRPGPAERPF-PGEKGPPGAAASAVSGSWL 334
G G L P A L P PA RP PPG A + G L
Sbjct: 279 PVGGGNL-PSAPPPANFPHVTPNL-------PPPPALRPLNNASASPPGLGAQPLPGH-L 329
Query: 335 PIMLESEAGGTDAAGQA-GWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSP 393
P A GQ G PG G AP +P P S+ P FP
Sbjct: 330 P--------SPHAMGQGMGGLPPGPEKGPTLAP-----SPHSLPPASSSAPAPPMRFPYS 376
Query: 394 VSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPS--- 450
S S++ S S S S S P + P S PP + S+ PP
Sbjct: 377 SSSSSSAAAS--SSSSSSSSSASPFPASQALPSYPHSF-----PPPTSLSVSNQPPKYTQ 429
Query: 451 -GLPRPGTRWFRSFLPRPHSRPL-SSHSLPSPKGCSPPPPVDPGSSAAP 497
LP P P+ R L +S++ P P PP S+A P
Sbjct: 430 PSLPSQAVWSQGPPPPPPYGRLLANSNAHPGPF----PPSTGAQSTAHP 474
Score = 30.0 bits (66), Expect = 5.6
Identities = 52/186 (27%), Positives = 67/186 (36%), Gaps = 41/186 (22%)
Query: 380 GSANQTPGEAFPSPV-------------SFSAAKLRSDRGGPSW------SISELSVDPQ 420
G++ P AFP P+ S S LR GP+ +S P
Sbjct: 505 GNSGPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPN 564
Query: 421 GSTVKQIP--SSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRP----HSRPLSS 474
G V SS S+ P PS + P G P P F P P S LS+
Sbjct: 565 GPPVSSSSNSSSSTSQGSYPCSHPSP-SQGPQGAPYP-------FPPVPTVTTSSATLST 616
Query: 475 -----HSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRR- 528
S P+ + PP P AP+ G++K P PS R+ TPP R
Sbjct: 617 VIATVASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGSPPSFRT-GTPPGYRG 675
Query: 529 -SPSSG 533
SP +G
Sbjct: 676 TSPPAG 681
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 50.4 bits (119), Expect = 4e-06
Identities = 59/239 (24%), Positives = 85/239 (35%), Gaps = 23/239 (9%)
Query: 305 APRPGPAERPF---PGEKGP-----PGAAASAVSGSWLPIMLESEAGGTDAAG--QAGWR 354
AP P R F PG P PG +SG P M G + G G +
Sbjct: 196 APMEPPTSRMFQAPPGAPPPHPQLYPGGTGGVLSG---PPMGPKGGGAASSVGGPNGGKQ 252
Query: 355 SPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISE 414
P + + + G+ G P +P + P P +F ++
Sbjct: 253 HPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNN 312
Query: 415 LSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSS 474
S P G + +P L S P + GLP PG + P PHS P +S
Sbjct: 313 ASASPPGLGAQPLPGHLPS--------PHAMGQGMGGLP-PGPEKGPTLAPSPHSLPPAS 363
Query: 475 HSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLP-NRRWPSSRSLWTPPNRRSPSS 532
S P+P P S+AA +S S + + P ++ PS + PP S S+
Sbjct: 364 SSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSFPPPTSLSVSN 422
Score = 47.8 bits (112), Expect = 3e-05
Identities = 101/441 (22%), Positives = 152/441 (34%), Gaps = 69/441 (15%)
Query: 77 AAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSAS---PRLSKASSSSSRC 133
+++ A + + ++ PF A A+PS +S P T +S S P+ ++ S S
Sbjct: 380 SSSAAASSSSSSSSSSASPFPAS--QALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAV 437
Query: 134 WSRG--PTSGLGATLGGTVLPPAARTPRDGLRDRGR--LLSRNSTARRSFLELKEVDAVD 189
WS+G P G L + P P G + + + + ++ + ++
Sbjct: 438 WSQGPPPPPPYGRLLANSNAHPGPFPPSTGAQSTAHPPVSTHHHHHQQQQQQQQQQQQQQ 497
Query: 190 EQDVVREGEAPTPPRGKTSFRRQGRGGGGARAISPPPTVCRRGRGRLGWGGAGGQVQDVP 249
+Q G + PP G +G A + P++ G ++ P
Sbjct: 498 QQQQQHHGNSGPPPPGAFPHPLEGGSSHHAHPYAMSPSL--------------GSLRPYP 543
Query: 250 DTQVSSDLYPSPYLLVGSPEGLQAEQMAGMGVLGPQVEALAGELSSWAQLWGEGQAPRP- 308
P P L P + G GP V + + SS +Q P P
Sbjct: 544 ---------PGPAHL---PPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPS 591
Query: 309 -GPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPG 367
GP P+P P +SA + + + S AG A+ PG AP
Sbjct: 592 QGPQGAPYPFPPVPTVTTSSATLSTVIATVASSPAGYKTAS------PPGPPPYGKRAPS 645
Query: 368 GSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRG-----GP-SWSISELSVDPQG 421
PG PG SP SF RG GP ++ +V P G
Sbjct: 646 ---------PGAYKTATPPGYKPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVGP-G 695
Query: 422 STVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPK 481
PS L S PP A+P SG P T+ + + P S +P +
Sbjct: 696 PLPPAGPSGLPSLPPPP-------AAPASGPPLSATQ-IKQEPAEEYETPES--PVPPAR 745
Query: 482 GCSPPPPVDPGSSAAPTSGSF 502
SPPP V S A S F
Sbjct: 746 SPSPPPKVVDVPSHASQSARF 766
Score = 34.7 bits (78), Expect = 0.23
Identities = 77/289 (26%), Positives = 95/289 (32%), Gaps = 43/289 (14%)
Query: 216 GGGARAISPPPTVCRRGRGRLGWGGAGGQVQDVPDTQVSSDLYPSPYLLVGSPEGLQAEQ 275
GG +S PP + G GG G Q P T + + S G+P
Sbjct: 222 GGTGGVLSGPPMGPKGGGAASSVGGPNGGKQHPPPT---TPISVSSSGASGAPPTKPPTT 278
Query: 276 MAGMGVLGPQVEALAGELSSWAQLWGEGQAPRPGPAERPF-PGEKGPPGAAASAVSGSWL 334
G G L P A L P PA RP PPG A + G L
Sbjct: 279 PVGGGNL-PSAPPPANFPHVTPNL-------PPPPALRPLNNASASPPGLGAQPLPGH-L 329
Query: 335 PIMLESEAGGTDAAGQA-GWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSP 393
P A GQ G PG G AP +P P S+ P FP
Sbjct: 330 P--------SPHAMGQGMGGLPPGPEKGPTLAP-----SPHSLPPASSSAPAPPMRFPYS 376
Query: 394 VSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPS--- 450
S S++ S S S S S P + P S PP + S+ PP
Sbjct: 377 SSSSSSAAAS--SSSSSSSSSASPFPASQALPSYPHSF-----PPPTSLSVSNQPPKYTQ 429
Query: 451 -GLPRPGTRWFRSFLPRPHSRPL-SSHSLPSPKGCSPPPPVDPGSSAAP 497
LP P P+ R L +S++ P P PP S+A P
Sbjct: 430 PSLPSQAVWSQGPPPPPPYGRLLANSNAHPGPF----PPSTGAQSTAHP 474
Score = 30.0 bits (66), Expect = 5.6
Identities = 52/186 (27%), Positives = 67/186 (36%), Gaps = 41/186 (22%)
Query: 380 GSANQTPGEAFPSPV-------------SFSAAKLRSDRGGPSW------SISELSVDPQ 420
G++ P AFP P+ S S LR GP+ +S P
Sbjct: 505 GNSGPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPN 564
Query: 421 GSTVKQIP--SSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRP----HSRPLSS 474
G V SS S+ P PS + P G P P F P P S LS+
Sbjct: 565 GPPVSSSSNSSSSTSQGSYPCSHPSP-SQGPQGAPYP-------FPPVPTVTTSSATLST 616
Query: 475 -----HSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRR- 528
S P+ + PP P AP+ G++K P PS R+ TPP R
Sbjct: 617 VIATVASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGSPPSFRT-GTPPGYRG 675
Query: 529 -SPSSG 533
SP +G
Sbjct: 676 TSPPAG 681
>gi|7662228 synaptosomal-associated protein, 91kDa homolog [Homo
sapiens]
Length = 907
Score = 50.1 bits (118), Expect = 5e-06
Identities = 116/555 (20%), Positives = 173/555 (31%), Gaps = 106/555 (19%)
Query: 11 GLRRWGRLAAGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRRRQAGCLRVVP 70
G WG L AA SVP + S PF P + A A A + V
Sbjct: 375 GATAWGDLLGEDSLAALSSVPSEAQISDPFAPEPTPPTTTAEIATASASASTTTTVTAVT 434
Query: 71 R------------PGVARAA-------------ACCACACAGRTNRQP------------ 93
PG A AA A AC+G P
Sbjct: 435 AEVDLFGDAFAASPGEAPAASEGAAAPATPTPVAAALDACSGNDPFAPSEGSAEAAPELD 494
Query: 94 ----RPFQARLLAAVPSASNSK-TPCTCMSASPRLSKASSSSSRCWSRGPTSGLGATLGG 148
+P + + P+AS + P T S +P ++ A+++++ + T+ +
Sbjct: 495 LFAMKPPETSVPVVTPTASTAPPVPATAPSPAPAVAAAAAATTAATAAATTTTTTSAATA 554
Query: 149 TVLPPAARTPRDGLRDRGRLLSRNSTARRSFLELKEVDAVDEQDVVREGEAPTPPRGKTS 208
T PPA D + + ++L DA +G +P P T+
Sbjct: 555 TTAPPALDIFGDLFESTPEVAAAPKPDAAPSIDLFSTDAFSSPP---QGASPVPESSLTA 611
Query: 209 FRRQGRGGGGARAISPPPTVCRRGRGRLGWGGAGGQVQDVPDTQVSSDLYPSPYLLVGSP 268
A A P T + + G + D SS P P S
Sbjct: 612 ----DLLSVDAFAAPSPATTASPAK-----VDSSGVIDLFGDAFGSSASEPQPASQAASS 662
Query: 269 EGLQAEQMAGMG-----------------VLGPQVEALAGELSSWAQL----------WG 301
A+ +AG G +L P EA G S + G
Sbjct: 663 SSASADLLAGFGGSFMAPSPSPVTPAQNNLLQPNFEAAFGTTPSTSSSSSFDPSVFDGLG 722
Query: 302 EGQAPRPGPAERPFPGEKGP--PGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGK- 358
+ P PA +P P P P AAS GS L L S G +G + +
Sbjct: 723 DLLMPTMAPAGQPAPVSMVPPSPAMAASKALGSDLDSSLASLVGNLGISGTTTKKGDLQW 782
Query: 359 SMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSI--SELS 416
+ G+ GG+ P++ P SA P V + + G PS +
Sbjct: 783 NAGEKKLTGGANWQPKVAPATWSAGVPPSAPLQGAVP-PTSSVPPVAGAPSVGQPGAGFG 841
Query: 417 VDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHS 476
+ P G+ + +P + P A ++ P PGT+ LS
Sbjct: 842 MPPAGTGMPMMP------QQPVMFAQPMMRPPFGAAAVPGTQ-------------LSPSP 882
Query: 477 LPSPKGCSPPPPVDP 491
P+ + PP DP
Sbjct: 883 TPASQSPKKPPAKDP 897
Score = 32.0 bits (71), Expect = 1.5
Identities = 87/408 (21%), Positives = 126/408 (30%), Gaps = 71/408 (17%)
Query: 159 RDGLRDRGRLLSRNSTARRSFLELKEVDAVDEQDVVREGEAPTPP-----------RGKT 207
+D L R L+R T FL++ E +D+ D+ +AP+ GK
Sbjct: 231 KDALEIYKRFLTR-MTRVSEFLKVAEQVGIDKGDIPDLTQAPSSLMETLEQHLNTLEGKK 289
Query: 208 SFRRQGRGGGGARAISPPPTVCRRGRGRLGWGGAGGQVQDVPDTQVSSDLYPSPYLLV-- 265
+G G + S P T DT DL+ + V
Sbjct: 290 PGNNEGSGAPSPLSKSSPATTVT---------SPNSTPAKTIDTSPPVDLFATASAAVPV 340
Query: 266 --GSPEG----LQAEQMAG--MGVLGPQVEALAGELSSWAQLWGE------GQAPRPGPA 311
P LQ + +G P AG ++W L GE P
Sbjct: 341 STSKPSSDLLDLQPDFSSGGAAAAAAPAPPPPAGGATAWGDLLGEDSLAALSSVPSEAQI 400
Query: 312 ERPFPGEKGPPGAAA---SAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMG---DAAA 365
PF E PP A +A + + + + D G A SPG++ AAA
Sbjct: 401 SDPFAPEPTPPTTTAEIATASASASTTTTVTAVTAEVDLFGDAFAASPGEAPAASEGAAA 460
Query: 366 PG----------GSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISEL 415
P GN P GSA P + A K P S+
Sbjct: 461 PATPTPVAAALDACSGNDPFAPSEGSAEAAP------ELDLFAMK------PPETSVP-- 506
Query: 416 SVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSH 475
V P ST +P++ S P A + A+ + T + + P +
Sbjct: 507 VVTPTASTAPPVPATAPS----PAPAVAAAAAATTAATAAATTTTTTSAATATTAPPALD 562
Query: 476 SLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWT 523
+P P AAP+ F A+ + P P S T
Sbjct: 563 IFGDLFESTPEVAAAPKPDAAPSIDLFSTDAFSSPPQGASPVPESSLT 610
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 49.3 bits (116), Expect = 9e-06
Identities = 99/377 (26%), Positives = 119/377 (31%), Gaps = 79/377 (20%)
Query: 190 EQDVVREGEAPTPPRGKTSFRRQGRGGGGARAISPPPTVC--RRGRGRLGWGGAGGQV-- 245
EQ V + AP P S R RG G R + PP R G G GA G
Sbjct: 660 EQGVPGDLGAPGP-----SGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGA 714
Query: 246 QDVPDTQVSSDLYPSPYLLVGSPEGLQAEQMAG----MGVLGPQ----------VEALAG 291
P +Q + L G P A + G G GP+ V L G
Sbjct: 715 PGAPGSQGAPGLQ-------GMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTG 767
Query: 292 ELSSWAQLWGEGQAPRPGPAERPFP----------GEKGPPGAAASA-VSGSWLPIMLES 340
+ G GP+ P GE GPPG A A G+ +
Sbjct: 768 PIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKG 827
Query: 341 EAGGTDAAGQAGWRSPGKSMGDAAAPG--GSLGNPRLRPGRGSANQTPGEAFPSPVSFSA 398
E G A G AG P G A PG G++G P + RGSA FP
Sbjct: 828 EPGDAGAKGDAGPPGPA---GPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVG 884
Query: 399 AKLRSDRGGPSW----SISELSVDPQGST-------------------VKQIPSSLQSRE 435
S GP + E P+G T K P +
Sbjct: 885 PPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAG 944
Query: 436 VPPTDAPSLLASPPSGLPRPGTRWFRSF--LPRPHSRPLSSHSLPSPKGCS----PPPPV 489
P T P +A + PG R R F LP P P P G S PP P+
Sbjct: 945 APGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEP----GKQGPSGASGERGPPGPM 1000
Query: 490 DPGSSAAPTSGSFKNQA 506
P A P S + A
Sbjct: 1001 GPPGLAGPPGESGREGA 1017
Score = 47.4 bits (111), Expect = 3e-05
Identities = 95/336 (28%), Positives = 109/336 (32%), Gaps = 68/336 (20%)
Query: 203 PRGKTSFRRQGRGGGGARAISPPPTVCRRGRGRLGWGGAGGQVQDVPDTQVSSDLYPSPY 262
P GKT G G R P P R G +G+ G G + + P P
Sbjct: 549 PDGKTG--PPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGE--PGKAGERGVPGPP 604
Query: 263 LLVGSPEGLQAEQMAGMGVLGPQVEALAGELSSWAQLWGEGQAPRPGPAERPFPGEKGPP 322
VG P G E A G GP AGE Q P P + PG GPP
Sbjct: 605 GAVG-PAGKDGEAGA-QGPPGPA--GPAGERGE--------QGPAGSPGFQGLPGPAGPP 652
Query: 323 GAA-------------ASAVSGSWLPIMLESEAGGTDAAGQAGWR----SPGK--SMGDA 363
G A A SG+ E G G AG R +PG + GDA
Sbjct: 653 GEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDA 712
Query: 364 AAPG--GSLGNPRLR--PGRGSANQTPGEAFPSPVSFSAAKLRSDRG--GPSWSISELSV 417
APG GS G P L+ PG A PG + DRG GP +
Sbjct: 713 GAPGAPGSQGAPGLQGMPGERGAAGLPGP-------------KGDRGDAGPKGA------ 753
Query: 418 DPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSL 477
GS K L PP A + SG P P P
Sbjct: 754 --DGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEP----GP 807
Query: 478 PSPKGCSPPPPVD--PGSSAAPTSGSFKNQAYPTLP 511
P P G + PP D PG+ P K A P P
Sbjct: 808 PGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGP 843
Score = 43.1 bits (100), Expect = 6e-04
Identities = 68/258 (26%), Positives = 91/258 (35%), Gaps = 30/258 (11%)
Query: 259 PSPYLLVGSPEGLQAEQMAGMGVLG-PQVEALAGELSSWAQLWGEGQA-PRPGPAERPFP 316
P P L G P + G G G P + +AG + G A P+ P E P
Sbjct: 475 PGPTGLPGPPG-----ERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRP 529
Query: 317 GEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLR 376
GE G PG A ++GS + + G AGQ G P G A G +G P +
Sbjct: 530 GEAGLPG--AKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPG-ARGQAGVMGFPGPK 586
Query: 377 -----PGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSL 431
PG+ PG P V + + GP P G +Q P+
Sbjct: 587 GAAGEPGKAGERGVPGP--PGAVGPAGKDGEAGAQGPPG-----PAGPAGERGEQGPAGS 639
Query: 432 QSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRP-HSRPLSSHSLPSPKGC-SPPPPV 489
+ P A PP +PG + L P S P +G PP P
Sbjct: 640 PGFQGLPGP-----AGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPA 694
Query: 490 DP-GSSAAPTSGSFKNQA 506
P G++ AP + K A
Sbjct: 695 GPRGANGAPGNDGAKGDA 712
Score = 42.4 bits (98), Expect = 0.001
Identities = 71/259 (27%), Positives = 88/259 (33%), Gaps = 51/259 (19%)
Query: 280 GVLGPQVEALAGELSSWAQLWGEGQ-APRPGPAERPFPGEKGPPGA-------AASAVSG 331
G GP+ GE S + GQ PR P ER PG GP GA A+ G
Sbjct: 281 GPAGPK-----GEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPG 335
Query: 332 SWLPIMLESEAGGTDAAGQAGWRSPGKS------MGDAAAPG-----GSLGNPRL--RPG 378
P G A G+AG + P S G+ PG G GNP +PG
Sbjct: 336 PTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPG 395
Query: 379 RGSANQTPGEA----FPSPVSFSAAKLRSDRGGPSWSISEL----SVDPQGSTVKQIPSS 430
AN PG A FP S + GP + E S G+ + P
Sbjct: 396 AKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVG 455
Query: 431 LQSREVPPTD----------APSLLASPPSGLPRPGTRWF--RSFLPRPHSRPLSSHSLP 478
+Q P + P+ L PP PG+R F + P P P
Sbjct: 456 VQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKG-PAGERGSP 514
Query: 479 SPKGCSPPPPVDPGSSAAP 497
P G P PG + P
Sbjct: 515 GPAG----PKGSPGEAGRP 529
Score = 42.0 bits (97), Expect = 0.001
Identities = 62/223 (27%), Positives = 81/223 (36%), Gaps = 38/223 (17%)
Query: 302 EGQAPRPGPAERPFPGEKGPPG--AAASAVSGSWLPIM-----LESEAGGTDAAGQAGWR 354
+G+A +PG PGE+GPPG A + LP M G AG AG +
Sbjct: 232 DGEAGKPGR-----PGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPK 286
Query: 355 SPGKSMGDAAAPG--GSLGNP--RLRPG-------RGSANQTPGEAFPSPVSFSAAKLRS 403
S G+ APG G G P R RPG RG+ T P P +
Sbjct: 287 GEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPP--- 343
Query: 404 DRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLP----RPGTRW 459
G P ++ PQG + P ++ PP A A+ P+G P +PG +
Sbjct: 344 --GFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAG---AAGPAGNPGADGQPGAKG 398
Query: 460 FR---SFLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSAAPTS 499
P S P G P P + G AP S
Sbjct: 399 ANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGS 441
Score = 39.3 bits (90), Expect = 0.009
Identities = 87/342 (25%), Positives = 107/342 (31%), Gaps = 33/342 (9%)
Query: 203 PRGKTSFR-RQGRGG-----GGARAISPPPTVCRRG----RGRLGWGGAGGQVQDV-PDT 251
P G T F GR G G A PP + G RG G G G+V P
Sbjct: 870 PPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPG 929
Query: 252 QVSSDLYPSPYLLVGSPEGLQAEQMAGM-GVLGPQVEALAGELSSWAQLWGEGQAPRPGP 310
P G+P + +AG GV+G + GE G+ + GP
Sbjct: 930 PAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVG--LPGQRGERGFPGLPGPSGEPGKQGP 987
Query: 311 A----ERPFPGEKGPPG-AAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAA 365
+ ER PG GPPG A SG E G + G G R G A
Sbjct: 988 SGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGA 1047
Query: 366 PGGSLGNPRLRP-GRGSANQTPGEAFPS-PVSFSAAKLRSDRGGPSWSISELSVD-PQGS 422
PG + P G+ G A P+ PV A+ + GP E +G
Sbjct: 1048 PGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGI 1107
Query: 423 TVKQIPSSLQSREVPP----------TDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPL 472
+ S LQ PP P+ PP PG LP P P
Sbjct: 1108 KGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNG-LPGPIGPPG 1166
Query: 473 SSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRR 514
PP P P P S F P P +
Sbjct: 1167 PRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFLPQPPQEK 1208
Score = 32.3 bits (72), Expect = 1.1
Identities = 31/100 (31%), Positives = 37/100 (37%), Gaps = 12/100 (12%)
Query: 303 GQAPRPG----PAERPFPGEKGPPG-AAASAVSGSWLPIML----ESEAGGTDAAGQAGW 353
G A PG P + PG GPPG + G++ P + E GG G G
Sbjct: 124 GPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGP 183
Query: 354 RSPGKSMGDAAAPG--GSLGNPRLRPGRGSANQTPGEAFP 391
P G APG G G P PG A+ G P
Sbjct: 184 SGPRGLPGPPGAPGPQGFQGPPG-EPGEPGASGPMGPRGP 222
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 49.3 bits (116), Expect = 9e-06
Identities = 103/441 (23%), Positives = 147/441 (33%), Gaps = 77/441 (17%)
Query: 105 PSASNSKTPCTCMSASPRLSKASSSSSRCWSRGP--TSGLGATLGGTVLPPAARTPRD-G 161
PS N+ P + +P + K+ S S + P T + + L P A +P++
Sbjct: 712 PSPQNTCAPLATLVLAPEIPKSVPSPSLPPAGTPPGTKKVDGISHTSALAPVASSPKECP 771
Query: 162 LRDRGRLLSRNSTARRSFLELKEVDAVDEQDVVREGEAPTPPRGKTSFRRQGRGGGGARA 221
D G + +S ++L D+ V + PP K S G +
Sbjct: 772 TEDSGASATASSKGTLTYL----ADSPSPLGVSVSPQTKRPPTKKGSAGPDTPIGNLSSP 827
Query: 222 ISPPPTVCRRGRGRLGWGGAGGQVQDVPDTQVSSDLYPSPYLLVGSPEGLQAEQMAGMGV 281
+SP L + G+ +D P T S P+P G+P ++ GV
Sbjct: 828 VSPVEASFLP-ENSLSFQGS----KDSPATTHS----PTPPSPKGAPTPSAVTPLSPKGV 878
Query: 282 LGPQVEALAGELSSWAQLWGEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESE 341
P E P P PFP E GP A + +
Sbjct: 879 TLPPKET-----------------PTPSVVNLPFPKE-GPATPAPKQAPALSMTSSSPKK 920
Query: 342 AGGTDAA-GQAGWRSP-GKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAA 399
A T A G SP G AA P G P P A P PSP
Sbjct: 921 ARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPAT-PSPKWAPTPPAATPPSP------ 973
Query: 400 KLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRW 459
+GGP+ + P+G+ + + P T +P +PP+ P
Sbjct: 974 -----KGGPA------TPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTP------ 1016
Query: 460 FRSFLPRPHSRPLSSHSLPSPKGCSPPPPVDPGS-----SAAPTSGSFKNQAYPTLPNRR 514
P P P ++ P PKG S PP P S +A P TLP+ +
Sbjct: 1017 -----PSPKGSPAAT---PFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPK 1068
Query: 515 ----WPSSRSLWTPPNRRSPS 531
PS + TPP PS
Sbjct: 1069 GGPATPSLKGAPTPPAATPPS 1089
Score = 49.3 bits (116), Expect = 9e-06
Identities = 103/440 (23%), Positives = 148/440 (33%), Gaps = 56/440 (12%)
Query: 102 AAVPSASNSKTPCTCMSASPRLSKASSSSSRCWSRGPTSGLGATLGG-TVLPPAARTPRD 160
A P AS+ K T S + + ASS + + S LG ++ T PP +
Sbjct: 759 ALAPVASSPKECPTEDSGAS--ATASSKGTLTYLADSPSPLGVSVSPQTKRPPTKKGSAG 816
Query: 161 GLRDRGRLLSRNSTARRSFLELKEVDAVDEQDVVREGEAPTPPRGKTSFRRQGRGGGGAR 220
G L S S SFL + +D +PTPP K G
Sbjct: 817 PDTPIGNLSSPVSPVEASFLPENSLSFQGSKDSPATTHSPTPPSPK--------GAPTPS 868
Query: 221 AISPPPTVCRRGRGRLGWGGAGGQVQDVPDTQVSSDLYPSPYLLVGSPEGLQAEQMAGMG 280
A++P L G ++ P V + +P +P+ A M
Sbjct: 869 AVTP-----------LSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTS-- 915
Query: 281 VLGPQVEALAGELSSWAQLWGEGQAPRPGPAERPFPGEKGPPGAAASAVSGS--WLPIML 338
+ + A +G P P P P PP + S W P
Sbjct: 916 ---------SSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAP--- 963
Query: 339 ESEAGGTDAAGQAGWRSP---GKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVS 395
+ T + + G +P G AA P G P +G A P PSP
Sbjct: 964 -TPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKG-APTPPAVTPPSPKG 1021
Query: 396 FSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRP 455
AA G S + P+GS P++ + PT + L SP G P
Sbjct: 1022 SPAATPFPK--GASTPPAATPPSPKGS-----PAATPLPKGAPTTPAATLPSPKGGPATP 1074
Query: 456 GTRWFRSFLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSAAPTSG--SFKNQAYPTLPNR 513
+ + P + PSPKG PP P S P G + ++ PT P
Sbjct: 1075 SLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPS---PKGGLATPPHKGAPTTPAA 1131
Query: 514 RWPSSR-SLWTPPNRRSPSS 532
PS + L TPP + +P++
Sbjct: 1132 TPPSPKGGLATPPPKGAPTT 1151
Score = 46.2 bits (108), Expect = 8e-05
Identities = 63/250 (25%), Positives = 84/250 (33%), Gaps = 35/250 (14%)
Query: 310 PAERPFPGEKG----PPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAA 365
PA P P KG PP A + P S GG G +P +
Sbjct: 1152 PAATP-PSPKGGLATPPPKGAPTTPAATPP----SPKGGLATPSPKG--APTTPAATPPS 1204
Query: 366 PGGSLGNPRLRPGRGSANQTP-----GEAFPSPV---SFSAAKLRSDRGGPSWSISELSV 417
P G L P + + TP G A PSP + AA S +GGP+ + +
Sbjct: 1205 PKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAP 1264
Query: 418 DPQGSTVKQIPSSLQSRE----------VPPTDAPSLLASPPSGLPRPGTRWFRS----- 462
P +T + L + PP+ SPP G P P S
Sbjct: 1265 TPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSP 1324
Query: 463 FLPRPHSRPLS-SHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSL 521
P P P + + PSPKG P P S PT+ S K P ++
Sbjct: 1325 GTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAM 1384
Query: 522 WTPPNRRSPS 531
P +R P+
Sbjct: 1385 TPPSPKRGPA 1394
Score = 44.3 bits (103), Expect = 3e-04
Identities = 55/225 (24%), Positives = 76/225 (33%), Gaps = 36/225 (16%)
Query: 305 APRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAA---------GQAGWRS 355
+P+ GPA P G PP A ++ G + G + A G A
Sbjct: 1250 SPKGGPATPPPKGAPTPPAATPPSLKGG---LATPPHKGAPNPAVVTPPSPKGGPATSPP 1306
Query: 356 PGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSA--AKLRSDRGGPSWSIS 413
G AA P G+P P +G A P PSP A S +GGP+
Sbjct: 1307 KGAPTPPAATPPSPKGSPGTPPPKG-APTPPAVTPPSPKGTPTLPATTPSSKGGPT---- 1361
Query: 414 ELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLS 473
PSS + PP PS P P P +P P P S
Sbjct: 1362 -------------TPSSKEG-PTPPAATPSHKGGPAMTPPSPKR---GPAIPSPKGDPTS 1404
Query: 474 SHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSS 518
+P +P PV +A P+ G A + ++ P++
Sbjct: 1405 PAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPAT 1449
Score = 41.2 bits (95), Expect = 0.002
Identities = 64/264 (24%), Positives = 95/264 (35%), Gaps = 44/264 (16%)
Query: 305 APRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKS--MGD 362
AP+ GPA P KG P A P E A A + ++P MG
Sbjct: 1451 APKGGPAT---PSSKGDPTLPAVTP-----PSPKEPPAPKQVATSSSPKKAPATPAPMGA 1502
Query: 363 AAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGG---PSWSISELSVDP 419
P +P+ P S+ + P + +S + + P+ ++ P
Sbjct: 1503 PTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTP 1562
Query: 420 QGSTVKQIPSSLQSREV--PPTDAPSLLASPPSG----LPRPGTRWFRSFLPRPHS---- 469
T K+ P++ S+E PP PS PS +P T P P +
Sbjct: 1563 AIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTPP 1622
Query: 470 RPLSSHSLPSPKGCSPPPPVDPGS-SAAPTS--------GSFKNQAYPTLPNRRWPS--- 517
P + P+PKG PPV P S +PTS G+ QA LP ++ P+
Sbjct: 1623 SPEKGPATPAPKGTPTSPPVTPSSLKDSPTSPASVTCKMGATVPQASKGLPAKKGPTALK 1682
Query: 518 ---------SRSLWTPPNRRSPSS 532
S + T P R+ P +
Sbjct: 1683 EVLVAPAPESTPIITAPTRKGPQT 1706
Score = 37.7 bits (86), Expect = 0.027
Identities = 66/247 (26%), Positives = 87/247 (35%), Gaps = 37/247 (14%)
Query: 305 APRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAA 364
+P+ GPA P G PP A + GS P + T A +P G
Sbjct: 1296 SPKGGPATSPPKGAPTPPAATPPSPKGS--PGTPPPKGAPTPPA-----VTPPSPKGTPT 1348
Query: 365 APG---GSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQG 421
P S G P + TP A PS A S + GP +I DP
Sbjct: 1349 LPATTPSSKGGPTTPSSK--EGPTPPAATPSHKGGPAMTPPSPKRGP--AIPSPKGDPTS 1404
Query: 422 STV-----KQIPSSLQSRE----------VPPTDAP-SLLASPPSGLPRPGTRWFRSFLP 465
V K+ P++ +RE PP P SL +P + P+ G P
Sbjct: 1405 PAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPA-----TP 1459
Query: 466 RPHSRP-LSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSL-WT 523
P L + + PSPK P V SS + PTLP S + + T
Sbjct: 1460 SSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKEVPAT 1519
Query: 524 PPNRRSP 530
P +RR P
Sbjct: 1520 PSSRRDP 1526
Score = 29.3 bits (64), Expect = 9.5
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 10/101 (9%)
Query: 393 PVSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGL 452
P+S +A L S P+ + S P + V P S+Q P P+LL SPPS
Sbjct: 110 PISPAALALASPMIAPTLKGTPSSSAPL-ALVALAPHSVQKSSAFP---PNLLTSPPSVA 165
Query: 453 PRPGTRWFRSFLPRPHSRP------LSSHSLPSPKGCSPPP 487
P S P + S +P+PKG PP
Sbjct: 166 VAESGSVITLSAPIAPSEPKTNLNKVPSEVVPNPKGTPSPP 206
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 48.9 bits (115), Expect = 1e-05
Identities = 62/235 (26%), Positives = 87/235 (37%), Gaps = 35/235 (14%)
Query: 305 APRPGPAERPF--PGEKGPPGAAASAV------SGSWLPIMLESEAGGTDAAGQAGW--R 354
A +PG + P PG PP +GS P SE G A Q +
Sbjct: 343 AQQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKP---SSEQPGPKALAQPPGVGK 399
Query: 355 SPGKSMGDAAAPGGSLGNPR---LRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWS 411
+P + G A P +G P+ +PG S + PG K+ + + GP
Sbjct: 400 TPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPG-- 457
Query: 412 ISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRP 471
+ S G T + PS L PP P PP +PG+ P +P
Sbjct: 458 --KTSAQQTGPT--KPPSQLPGPAKPPPQQPGPAKPPPQ---QPGSA------KPPSQQP 504
Query: 472 LSSHSLPSPKGCSPPPPVDPGSSAAPTS--GSFKNQAYPTLPNRRWPSSRSLWTP 524
S+ P G + P P PGS+ P+ GS K A P + PS++ P
Sbjct: 505 GSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAK--PSAQQSTKP 557
Score = 46.6 bits (109), Expect = 6e-05
Identities = 63/245 (25%), Positives = 90/245 (36%), Gaps = 31/245 (12%)
Query: 304 QAPRPGPAERPFPG-EKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGD 362
Q P PG PG EK PG A S L L + G + P + G
Sbjct: 307 QQPTPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTV--------KPPVQPPGT 358
Query: 363 AAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFS----AAKLRSDRGGPSWSISELSVD 418
P LG P P + + ++ P P P + + K + + GP+ ++
Sbjct: 359 TKPPAQPLG-PAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGT 417
Query: 419 PQGSTVKQIPSSLQSREVP-PTDAPSLLASP---PSGLPRPGTRWFRSFLPRPHSRPLSS 474
P+ + Q P + P PT P P P+ PG + P L
Sbjct: 418 PK--PLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPG 475
Query: 475 HSLPSPK--GCSPPPPVDPGSSAAPTS--GSFK---NQAYPTLPNRRWPSSRSLWTPPNR 527
+ P P+ G + PPP PGS+ P+ GS K Q P P+ + P S T P
Sbjct: 476 PAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGS----TKPPS 531
Query: 528 RSPSS 532
+ P S
Sbjct: 532 QQPGS 536
Score = 39.3 bits (90), Expect = 0.009
Identities = 40/166 (24%), Positives = 59/166 (35%), Gaps = 10/166 (6%)
Query: 293 LSSWAQLWGEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAG 352
L S A+ G + P P P ++ PG ++ +G P
Sbjct: 427 LQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGP 486
Query: 353 WRSPGKSMGDAAAPG---GSLGNPRLRPGRGSAN-QTPGEAFPSPVSFSAAKLRSDRGGP 408
+ P + G A P GS P +PG + Q PG P +AK + + P
Sbjct: 487 AKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSP 546
Query: 409 SWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPR 454
+ ++ S P T P PPT +PS P GLP+
Sbjct: 547 AKPSAQQSTKPVSQTGSGKPLQ------PPTVSPSAKQPPSQGLPK 586
Score = 32.7 bits (73), Expect = 0.86
Identities = 30/96 (31%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 408 PSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPP-SGLPRPGTRWFRS---- 462
P S+ L + Q ST +E P + PS SP S LP +FRS
Sbjct: 2343 PPSSVIALPMKEQLSTTYFTSGETFGQEKPASQLPS--GSPSVSSLPAKPRPFFRSSSLD 2400
Query: 463 FLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSAAPT 498
+P P P P PPPP+ P +S PT
Sbjct: 2401 ISAQPPPPPPPPPPPPPPPPPPPPPPLPPPTSPKPT 2436
Score = 29.6 bits (65), Expect = 7.3
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 437 PPTDAPSLLASPPSGLPRP----------GTRWFRSFLPRPHSRPLSSHSLPSPKGC-SP 485
PP P + P+ LP+ T F + + L S+ LP + C +
Sbjct: 2423 PPPPLPPPTSPKPTILPKKKLTVASPVTTATPLFDAVTTLETTAVLRSNGLPVTRICTTA 2482
Query: 486 PPPVDPGSSAAPTSGSFKNQAYPTLP 511
PPPV P S+ P+ F ++ P+ P
Sbjct: 2483 PPPVPPKPSSIPSGLVFTHRPEPSKP 2508
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 48.9 bits (115), Expect = 1e-05
Identities = 62/235 (26%), Positives = 87/235 (37%), Gaps = 35/235 (14%)
Query: 305 APRPGPAERPF--PGEKGPPGAAASAV------SGSWLPIMLESEAGGTDAAGQAGW--R 354
A +PG + P PG PP +GS P SE G A Q +
Sbjct: 343 AQQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKP---SSEQPGPKALAQPPGVGK 399
Query: 355 SPGKSMGDAAAPGGSLGNPR---LRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWS 411
+P + G A P +G P+ +PG S + PG K+ + + GP
Sbjct: 400 TPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPG-- 457
Query: 412 ISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRP 471
+ S G T + PS L PP P PP +PG+ P +P
Sbjct: 458 --KTSAQQTGPT--KPPSQLPGPAKPPPQQPGPAKPPPQ---QPGSA------KPPSQQP 504
Query: 472 LSSHSLPSPKGCSPPPPVDPGSSAAPTS--GSFKNQAYPTLPNRRWPSSRSLWTP 524
S+ P G + P P PGS+ P+ GS K A P + PS++ P
Sbjct: 505 GSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAK--PSAQQSTKP 557
Score = 46.6 bits (109), Expect = 6e-05
Identities = 63/245 (25%), Positives = 90/245 (36%), Gaps = 31/245 (12%)
Query: 304 QAPRPGPAERPFPG-EKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGD 362
Q P PG PG EK PG A S L L + G + P + G
Sbjct: 307 QQPTPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTV--------KPPVQPPGT 358
Query: 363 AAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFS----AAKLRSDRGGPSWSISELSVD 418
P LG P P + + ++ P P P + + K + + GP+ ++
Sbjct: 359 TKPPAQPLG-PAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGT 417
Query: 419 PQGSTVKQIPSSLQSREVP-PTDAPSLLASP---PSGLPRPGTRWFRSFLPRPHSRPLSS 474
P+ + Q P + P PT P P P+ PG + P L
Sbjct: 418 PK--PLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPG 475
Query: 475 HSLPSPK--GCSPPPPVDPGSSAAPTS--GSFK---NQAYPTLPNRRWPSSRSLWTPPNR 527
+ P P+ G + PPP PGS+ P+ GS K Q P P+ + P S T P
Sbjct: 476 PAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGS----TKPPS 531
Query: 528 RSPSS 532
+ P S
Sbjct: 532 QQPGS 536
Score = 39.3 bits (90), Expect = 0.009
Identities = 40/166 (24%), Positives = 59/166 (35%), Gaps = 10/166 (6%)
Query: 293 LSSWAQLWGEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAG 352
L S A+ G + P P P ++ PG ++ +G P
Sbjct: 427 LQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGP 486
Query: 353 WRSPGKSMGDAAAPG---GSLGNPRLRPGRGSAN-QTPGEAFPSPVSFSAAKLRSDRGGP 408
+ P + G A P GS P +PG + Q PG P +AK + + P
Sbjct: 487 AKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSP 546
Query: 409 SWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPR 454
+ ++ S P T P PPT +PS P GLP+
Sbjct: 547 AKPSAQQSTKPVSQTGSGKPLQ------PPTVSPSAKQPPSQGLPK 586
Score = 32.7 bits (73), Expect = 0.86
Identities = 30/96 (31%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 408 PSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPP-SGLPRPGTRWFRS---- 462
P S+ L + Q ST +E P + PS SP S LP +FRS
Sbjct: 2343 PPSSVIALPMKEQLSTTYFTSGETFGQEKPASQLPS--GSPSVSSLPAKPRPFFRSSSLD 2400
Query: 463 FLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSAAPT 498
+P P P P PPPP+ P +S PT
Sbjct: 2401 ISAQPPPPPPPPPPPPPPPPPPPPPPLPPPTSPKPT 2436
Score = 29.6 bits (65), Expect = 7.3
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 437 PPTDAPSLLASPPSGLPRP----------GTRWFRSFLPRPHSRPLSSHSLPSPKGC-SP 485
PP P + P+ LP+ T F + + L S+ LP + C +
Sbjct: 2423 PPPPLPPPTSPKPTILPKKKLTVASPVTTATPLFDAVTTLETTAVLRSNGLPVTRICTTA 2482
Query: 486 PPPVDPGSSAAPTSGSFKNQAYPTLP 511
PPPV P S+ P+ F ++ P+ P
Sbjct: 2483 PPPVPPKPSSIPSGLVFTHRPEPSKP 2508
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 48.5 bits (114), Expect = 2e-05
Identities = 58/214 (27%), Positives = 72/214 (33%), Gaps = 47/214 (21%)
Query: 197 GEAPTPPRGKTSFRRQGRGGGGARAISPPPTVCRRGRGRLGWGGAGGQVQDVPDTQVSSD 256
G A GK S G GG G +A SP G G G GGQ QD+ S
Sbjct: 422 GPAAAYATGKAS----GAGGAGGQAYSPGQPQGLLGPQAYGQGFGGGQAQDLSKAPSYSG 477
Query: 257 LYPSP------------------------YLLVGSPEGLQAEQMAGMGVLGPQVE----- 287
P P Y + G P A G+ P +
Sbjct: 478 GPPQPPSGPPPPGLATCQSYSPDQLQGQLYGVQGEPYPGPAAHSQGLPTASPSLSYSTGH 537
Query: 288 --ALAGELSSW--AQLWGEGQAPRPGPAERPF---PGEKGPPGAAASAVSGSWLPIMLES 340
AL+G W + L G G+A P RP P PPG + G +L +L S
Sbjct: 538 SPALSGHGGGWGPSSLGGGGEA-SPSHIIRPLQSPPATGRPPGVGSPGAPGKYLSSVLAS 596
Query: 341 ------EAGGTDAAGQAGWRSPGKSMGDAAAPGG 368
G+ AAG G++ G A PGG
Sbjct: 597 APFLAPPGAGSYAAGAGGYKGKGDGSELLAGPGG 630
Score = 42.0 bits (97), Expect = 0.001
Identities = 72/262 (27%), Positives = 95/262 (36%), Gaps = 44/262 (16%)
Query: 303 GQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWR----SPGK 358
G P PG E P + GP GA A A + P E+ GG G G+R SPG
Sbjct: 336 GGEPSPGAGE---PSKAGPSGATAGASGRATGP---EAAGGGGAGGGGGGYRPIIQSPGY 389
Query: 359 SMGDAAAPGGSLGNPRLRPGRGSANQTPG-EAFPSPVSFSAAKLRSDRGGPSWSISELSV 417
G + G R P R +A TP ++ P + A S GG
Sbjct: 390 KTGKGGYGAAAGGATRPPPPRSTA--TPKCQSLGGPAAAYATGKASGAGGAGGQAYSPG- 446
Query: 418 DPQG----STVKQIPSSLQSREVPPTDAPSLLA---SPPSGLPRPGTRWFRSFL------ 464
PQG Q Q++++ + APS PPSG P PG +S+
Sbjct: 447 QPQGLLGPQAYGQGFGGGQAQDL--SKAPSYSGGPPQPPSGPPPPGLATCQSYSPDQLQG 504
Query: 465 ------------PRPHSR--PLSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTL 510
P HS+ P +S SL G SP G P+S +A P+
Sbjct: 505 QLYGVQGEPYPGPAAHSQGLPTASPSLSYSTGHSPALS-GHGGGWGPSSLGGGGEASPSH 563
Query: 511 PNRRWPSSRSLWTPPNRRSPSS 532
R S + PP SP +
Sbjct: 564 IIRPLQSPPATGRPPGVGSPGA 585
Score = 37.7 bits (86), Expect = 0.027
Identities = 36/137 (26%), Positives = 48/137 (35%), Gaps = 17/137 (12%)
Query: 386 PGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSL-QSREVPPTDAPSL 444
P A P P + G P + E P T P+ Q PP P+L
Sbjct: 1426 PAAAVPGPPPLPGLPSANSNGTPEPPLLEEKPPP---TPPPAPTPQPQPPPPPPPPQPAL 1482
Query: 445 LASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKN 504
+ PP P P + P P P P P P PP P +AAP + +
Sbjct: 1483 PSPPPLVAPTPSS-------PPPPPLP------PPPPPAMPSPPPPPPPAAAPLAAPPEE 1529
Query: 505 QAYPTLPNRRWPSSRSL 521
A P+ + P +R L
Sbjct: 1530 PAAPSPEDPELPDTRPL 1546
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 47.4 bits (111), Expect = 3e-05
Identities = 84/305 (27%), Positives = 110/305 (36%), Gaps = 50/305 (16%)
Query: 224 PPPTVCRRGRGRLGWGGA-GGQVQDVPDTQVSSDLYPSPYLLVGSPEGLQAEQMAG---- 278
P PT + RG G+ GA GG + +P P +G A + G
Sbjct: 695 PGPTGAKGLRGIPGFAGADGGPGPRGLPGDAGREGFPGPPGFIGPRGSKGAVGLPGPDGS 754
Query: 279 ---MGVLGPQ----VEALAGELSSWAQLWGEGQAPRPG-PAERPFPGEKGPPGAAASAVS 330
+G+ GP L GE+ AQ G A PG P + PG++GPPG S
Sbjct: 755 PGPIGLPGPDGPPGERGLPGEVLG-AQPGPRGDAGVPGQPGLKGLPGDRGPPGFRGS--- 810
Query: 331 GSWLPIM--LESEAGGTDAAGQAGWRSPGKSMGDAAAPG--GSLGNPRLRPGR----GSA 382
+P M L+ + G +GQ G P G APG G LG P + PGR G
Sbjct: 811 -QGMPGMPGLKGQPGLPGPSGQPGLYGPPGLHGFPGAPGQEGPLGLPGI-PGREGLPGDR 868
Query: 383 NQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQG----STVKQIPSSLQSREVPP 438
P PV L DRG ++ + G + P R P
Sbjct: 869 GDPGDTGAPGPVGMKG--LSGDRGDAGFTGEQGHPGSPGFKGIDGMPGTPGLKGDRGSPG 926
Query: 439 TDA----PSLLASPPSGLPRPGTRWFRSFLPRPHSRPLS-------SHSLPSPKGCSPPP 487
D P L P PG++ F P + L+ S P P G PPP
Sbjct: 927 MDGFQGMPGLKGRPGF----PGSKGEAGFFGIPGLKGLAGEPGFKGSRGDPGPPG--PPP 980
Query: 488 PVDPG 492
+ PG
Sbjct: 981 VILPG 985
Score = 42.7 bits (99), Expect = 8e-04
Identities = 91/354 (25%), Positives = 124/354 (35%), Gaps = 56/354 (15%)
Query: 198 EAPTPPRGKTSFRRQGRGGGGARAISPPPTVCRRGRGRLGWGGAGGQVQDVPDTQ---VS 254
+ P P+G+ G G A SP P++ + RG G+ GA G+ P +Q
Sbjct: 331 DGPRGPKGEAG----DPGPPGLPAYSPHPSLAKGARGDPGFPGAQGE----PGSQGEPGD 382
Query: 255 SDLYPSPYLLVGSPE---GLQAEQMAGMGVLG-PQVEALAGELSSWAQLWGEGQAPRPGP 310
L P L +G + GL E M G +G P + AL G +G+ PGP
Sbjct: 383 PGLPGPPGLSIGDGDQRRGLPGE-MGPKGFIGDPGIPALYG-----GPPGPDGKRGPPGP 436
Query: 311 AERPFPGEKGPPG--AAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGG 368
PG GPPG + G+ + AG G G R P GDA
Sbjct: 437 -----PGLPGPPGPDGFLFGLKGA------KGRAGFPGLPGSPGARGPKGWKGDA----- 480
Query: 369 SLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIP 428
G R G + PG P P F+ R G + + P +K +P
Sbjct: 481 --GECRCTEGDEAIKGLPG--LPGPKGFAGINGEPGRKGDRGDPGQHGL-PGFPGLKGVP 535
Query: 429 SSL--QSREVPPTDAPSLLASPPSGLPR-PGTRWFRSFLPRPHSRPLSSH-SLPSPKGCS 484
++ + D+ ++ G P PG + P L LP P G
Sbjct: 536 GNIGAPGPKGAKGDSRTITTKGERGQPGVPGVPGMKGDDGSPGRDGLDGFPGLPGPPGDG 595
Query: 485 -PPPPVDPGSSAAP-TSGSFKNQAYPTL------PNRRWPSSRSLWTPPNRRSP 530
PP DPG P T G+ P L R +P L PP P
Sbjct: 596 IKGPPGDPGYPGIPGTKGTPGEMGPPGLGLPGLKGQRGFPGDAGLPGPPGFLGP 649
Score = 41.6 bits (96), Expect = 0.002
Identities = 73/279 (26%), Positives = 99/279 (35%), Gaps = 31/279 (11%)
Query: 232 GRGRLGWGGAGGQVQDVPDTQVSSDLYPSPYLLVGSPEGLQAEQMAGMGVLGPQVEALAG 291
G+G GW GA G + P + L+ P G P ++ G GP E G
Sbjct: 1174 GKGDDGWPGAPG-LPGFPGLRGIRGLHGLPGTK-GFPGSPGSDIHGDPGFPGPPGER--G 1229
Query: 292 ELSSWAQLWGEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAA--- 348
+ L G P ++ PGE+GPPG+ P S A G A
Sbjct: 1230 DPGEANTLPGPVGVPGQ-KGDQGAPGERGPPGSPGLQGFPGITPPSNISGAPGDKGAPGI 1288
Query: 349 -GQAGWRSPGKSMGDAAAPG--GSLGNPRLRPGRGSANQTPGEAFPS--PVSFSAAKLRS 403
G G+R P G AA PG G GNP PG G++ P P F +
Sbjct: 1289 FGLKGYRGPPGPPGSAALPGSKGDTGNPG-APGTPGTKGWAGDSGPQGRPGVFGLPGEKG 1347
Query: 404 DRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPP-----TDAPSLLASPPSGLPRPGTR 458
RG + + P G+ + P + P AP + P +PGT
Sbjct: 1348 PRGEQGFM---GNTGPTGAVGDRGPKGPKGDPGFPGAPGTVGAPGIAGIPQKIAVQPGT- 1403
Query: 459 WFRSFLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSAAP 497
P+ P + P+G PP +PG AP
Sbjct: 1404 ----VGPQGRRGPPGAPGEMGPQG----PPGEPGFRGAP 1434
Score = 37.0 bits (84), Expect = 0.046
Identities = 76/301 (25%), Positives = 103/301 (34%), Gaps = 63/301 (20%)
Query: 234 GRLGWGGAGGQVQDVPDTQVSSDLYPSPYLLVGSPEGLQAEQMAGMGVLG-PQVEALAGE 292
G G GA G D+ DT L G P GL+ E+ G G P ++ GE
Sbjct: 1079 GLYGEIGATGDFGDIGDT----------INLPGRP-GLKGER----GTTGIPGLKGFFGE 1123
Query: 293 LSSWAQLWGEG-------QAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGT 345
+ + G Q P + FPG GPPG+ + LP + + G
Sbjct: 1124 KGTEGDIGFPGITGVTGVQGPPGLKGQTGFPGLTGPPGSQGE-LGRIGLP-GGKGDDGWP 1181
Query: 346 DAAGQAGWRS----------PGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEA--FPSP 393
A G G+ PG + G +PG + PG PGEA P P
Sbjct: 1182 GAPGLPGFPGLRGIRGLHGLPG-TKGFPGSPGSDIHGDPGFPGPPGERGDPGEANTLPGP 1240
Query: 394 VSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLP 453
V K D+G P + P S + P PS ++ P
Sbjct: 1241 VGVPGQK--GDQGAPG--------------ERGPPGSPGLQGFPGITPPSNISGAPGDKG 1284
Query: 454 RPGTRWFRSFLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNR 513
PG + + P P S +LP KG D G+ AP + K A + P
Sbjct: 1285 APGIFGLKGYRGPP--GPPGSAALPGSKG-------DTGNPGAPGTPGTKGWAGDSGPQG 1335
Query: 514 R 514
R
Sbjct: 1336 R 1336
Score = 36.2 bits (82), Expect = 0.078
Identities = 51/207 (24%), Positives = 62/207 (29%), Gaps = 56/207 (27%)
Query: 300 WGEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKS 359
W P+ P PGEKGP G + G T G G R P
Sbjct: 1327 WAGDSGPQGRPGVFGLPGEKGPRGE--------------QGFMGNTGPTGAVGDRGPKGP 1372
Query: 360 MGDAAAPG--GSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSV 417
GD PG G++G P + PG P R GP + E+
Sbjct: 1373 KGDPGFPGAPGTVGAPGIAGIPQKIAVQPGTVGP-----------QGRRGPPGAPGEMG- 1420
Query: 418 DPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPR--------PGTRWFRSFLPRPHS 469
PQG P P +P P+ PG R P H
Sbjct: 1421 -PQG----------------PPGEPGFRGAPGKAGPQGRGGVSAVPGFRGDEG--PIGHQ 1461
Query: 470 RPLSSHSLPSPKGCSPPPPVDPGSSAA 496
P+ P G SP P PG S +
Sbjct: 1462 GPIGQEGAPGRPG-SPGLPGMPGRSVS 1487
Score = 31.2 bits (69), Expect = 2.5
Identities = 30/104 (28%), Positives = 36/104 (34%), Gaps = 7/104 (6%)
Query: 290 AGELSSWAQLWGEGQAPRPGPAERPFPGEKGPPGAAA-SAVSGSWLPIMLESEAGGTDAA 348
+G + + G GQ GP G GPPG + G G T
Sbjct: 48 SGGCQCYPEKGGRGQPGPVGPQ-----GYNGPPGLQGFPGLQGRKGDKGERGAPGVTGPK 102
Query: 349 GQAGWRSPGKSMGDAAAPGG-SLGNPRLRPGRGSANQTPGEAFP 391
G G R G PG G PR RPG N T G++ P
Sbjct: 103 GDVGARGVSGFPGADGIPGHPGQGGPRGRPGYDGCNGTQGDSGP 146
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 47.0 bits (110), Expect = 4e-05
Identities = 83/328 (25%), Positives = 121/328 (36%), Gaps = 53/328 (16%)
Query: 197 GEAPTPPRGKTSFRRQGRGGGGARAISPPPTVCRRGRGRLGWGGAGGQVQDVPDTQVSSD 256
G AP PP R GGGG + PP RR G +++ P+ S
Sbjct: 84 GAAPEPPPAG----RARPGGGGPQRPGPPSP--RRPLVPAGPAPPAAKLRPPPEGSAGSC 137
Query: 257 L-YPSPYLLVGSPEGLQAEQMAGMGVLGPQVEALAGELSSWAQLWGEGQAPRPGPAERPF 315
P+ + PE A GP A L++ A G G P PGP P
Sbjct: 138 APVPAAAAVAAGPEPAPA---------GPAKPAGPAALAARA---GPGPGPGPGPGPGPG 185
Query: 316 PGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGK--SMGDAAAPGGSLGNP 373
PG+ PG AA ++GS +L S A P + AAPG + P
Sbjct: 186 PGKPAGPG-AAQTLNGS--AALLNSHHAAAPAVSLVN-NGPAALLPLPKPAAPGTVIQTP 241
Query: 374 RLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQS 433
P G+A P A PSP + A + P P +T+ + P
Sbjct: 242 ---PFVGAA-APPAPAAPSPPAAPAPAAPAAAPPPP--------PPAPATLARPPGHPAG 289
Query: 434 REVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKGCSPPPPVDPGS 493
PPT AP++ PP+ G+ + P + + P G S P PG+
Sbjct: 290 ---PPTAAPAV--PPPAAAQNGGS---------AGAAPAPAPAAGGPAGVSGQP--GPGA 333
Query: 494 SAAPTSGSFKNQAYPTLPNRRWPSSRSL 521
+AA + K ++ + P++++L
Sbjct: 334 AAAAPAPGVKAESPKRVVQAAPPAAQTL 361
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 46.2 bits (108), Expect = 8e-05
Identities = 46/150 (30%), Positives = 62/150 (41%), Gaps = 16/150 (10%)
Query: 384 QTPGEAFPSPVSFSAAKLRSDRGGPS-WSISELSVDPQGSTVKQIPSSLQSREVPPTDAP 442
QT E F P + RS++ P +IS LS + K I ++LQ E ++
Sbjct: 583 QTDRETFLKPCESESKTTRSNQLVPKKLNISSLSQLSPPNDHKDIHAALQPMEGMASNQQ 642
Query: 443 SLLASPPSGLPRPGT--RWFRSFLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSAAPTSG 500
L PP+ +P P S P P P+S+ P P PPPP+ P SSA P
Sbjct: 643 KALPPPPASIPPPPPLPSGLGSLSPAPPMPPVSAGP-PLPPPPPPPPPLPPPSSAGPP-- 699
Query: 501 SFKNQAYPTLPNRRWPSSRSLWTPPNRRSP 530
P P P+S + PPN P
Sbjct: 700 -------PPPPPPPLPNSPA---PPNPGGP 719
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 46.2 bits (108), Expect = 8e-05
Identities = 54/208 (25%), Positives = 73/208 (35%), Gaps = 42/208 (20%)
Query: 306 PRP-GPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAA 364
PRP P RP P ++ PP SG+ P E GG A SPG + +
Sbjct: 1150 PRPVAPPTRPAPPQRPPPP------SGARSPAPTRKEFGGIGAPP-----SPGVARREME 1198
Query: 365 APGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAK---------LRSDRGGPSWSISEL 415
AP + GR + G A P P +S A+ + + + S L
Sbjct: 1199 APKSPGTTRKDNIGRSQPSPQAGLAGPGPAGYSTARPTIPPRAGVISAPQSHARASAGRL 1258
Query: 416 SVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLP---------- 465
+ + Q T + +S S +P P P S LP P R +P
Sbjct: 1259 TPESQSKTSE---TSKGSTFLPEPLKPQAAFPPQSSLPPPAQRLQEPLVPVAAPMPQSGP 1315
Query: 466 --------RPHSRPLSSHSLPSPKGCSP 485
+P R SSHSLPS P
Sbjct: 1316 QPNLETPPQPPPRSRSSHSLPSEASSQP 1343
Score = 34.7 bits (78), Expect = 0.23
Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 12/115 (10%)
Query: 407 GPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPR 466
G S S S + Q T+ + P + S + P+ APS PPS P + LP+
Sbjct: 1078 GTSPSSSPRTSPCQSPTISEGP--VPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQ 1135
Query: 467 PH-SRPLSSHSLPSPKGCSP---------PPPVDPGSSAAPTSGSFKNQAYPTLP 511
++PL P P+ +P PPP S APT F P P
Sbjct: 1136 KDPAQPLEPKRPPPPRPVAPPTRPAPPQRPPPPSGARSPAPTRKEFGGIGAPPSP 1190
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 46.2 bits (108), Expect = 8e-05
Identities = 54/208 (25%), Positives = 73/208 (35%), Gaps = 42/208 (20%)
Query: 306 PRP-GPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAA 364
PRP P RP P ++ PP SG+ P E GG A SPG + +
Sbjct: 1150 PRPVAPPTRPAPPQRPPPP------SGARSPAPTRKEFGGIGAPP-----SPGVARREME 1198
Query: 365 APGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAK---------LRSDRGGPSWSISEL 415
AP + GR + G A P P +S A+ + + + S L
Sbjct: 1199 APKSPGTTRKDNIGRSQPSPQAGLAGPGPAGYSTARPTIPPRAGVISAPQSHARASAGRL 1258
Query: 416 SVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLP---------- 465
+ + Q T + +S S +P P P S LP P R +P
Sbjct: 1259 TPESQSKTSE---TSKGSTFLPEPLKPQAAFPPQSSLPPPAQRLQEPLVPVAAPMPQSGP 1315
Query: 466 --------RPHSRPLSSHSLPSPKGCSP 485
+P R SSHSLPS P
Sbjct: 1316 QPNLETPPQPPPRSRSSHSLPSEASSQP 1343
Score = 34.7 bits (78), Expect = 0.23
Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 12/115 (10%)
Query: 407 GPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPR 466
G S S S + Q T+ + P + S + P+ APS PPS P + LP+
Sbjct: 1078 GTSPSSSPRTSPCQSPTISEGP--VPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQ 1135
Query: 467 PH-SRPLSSHSLPSPKGCSP---------PPPVDPGSSAAPTSGSFKNQAYPTLP 511
++PL P P+ +P PPP S APT F P P
Sbjct: 1136 KDPAQPLEPKRPPPPRPVAPPTRPAPPQRPPPPSGARSPAPTRKEFGGIGAPPSP 1190
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 46.2 bits (108), Expect = 8e-05
Identities = 69/256 (26%), Positives = 90/256 (35%), Gaps = 55/256 (21%)
Query: 303 GQAPRPGPAERP-FPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMG 361
G PGP +P +PG GPPG ++ E G T +AG+ G P S G
Sbjct: 1078 GDKGEPGPPGQPGYPGATGPPGLPG-----------IKGERGYTGSAGEKGEPGPPGSEG 1126
Query: 362 DAAAPG--------GSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSIS 413
PG G GN + +G Q PG FP P + GP +
Sbjct: 1127 LPGPPGPAGPRGERGPQGNSGEKGDQGFQGQ-PG--FPGPPGPPGFPGKVGSPGPPGPQA 1183
Query: 414 ELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASP------------PSGLPRPGTRWFR 461
E +GS + PS L PP P + P P PG
Sbjct: 1184 E-----KGSEGIRGPSGLPGSPGPP--GPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPP 1236
Query: 462 SFLPRPHSRPLSSH-SLPSPKG-CSPPPPVDPGSSAAPTS----GSFKNQAYPTLPNRRW 515
+ P + + H LP PKG C P P PGS+ P + G+ Q P P
Sbjct: 1237 GLMGPPGFKGKTGHPGLPGPKGDCGKPGP--PGSTGRPGAEGEPGAMGPQGRPGPPGHVG 1294
Query: 516 PSSRSLWTPPNRRSPS 531
P PP + P+
Sbjct: 1295 PPG-----PPGQPGPA 1305
Score = 37.4 bits (85), Expect = 0.035
Identities = 53/209 (25%), Positives = 67/209 (32%), Gaps = 54/209 (25%)
Query: 302 EGQAPRPGPAERPFPGEKGPPGA-AASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSM 360
+G PGP R G +G PGA + G P G A G G + +
Sbjct: 776 KGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKG---AT 832
Query: 361 GDAAAPGGSLGNPRLR---PGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSV 417
G PG S+ P R G+ TPGE P R ++G P E S
Sbjct: 833 GPVGPPGASVSGPPGRDGQQGQTGLRGTPGEKGP----------RGEKGEP----GECSC 878
Query: 418 DPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLP-RPGTRWFRSFLPRPHSRPLSSHS 476
QG + SG+P PG S+ P P P
Sbjct: 879 PSQGDLIF------------------------SGMPGAPGLWMGSSWQPGPQGPP----G 910
Query: 477 LPSPKGCSPPPPVDPGSSAAPTSGSFKNQ 505
+P P P PP PG P + Q
Sbjct: 911 IPGP----PGPPGVPGLQGVPGNNGLPGQ 935
Score = 34.3 bits (77), Expect = 0.29
Identities = 52/199 (26%), Positives = 72/199 (36%), Gaps = 50/199 (25%)
Query: 233 RGRLGWGGAGGQVQDVPDTQVSSDLYPSPYLLVGSPEGLQAEQMAGMGVLGPQVEALAGE 292
+G+ G G GG ++ VP + D P ++G P+G Q G +GP E LAGE
Sbjct: 398 KGQKGEKGDGG-IKGVPG-KPGRDGRPGEICVIG-PKG----QKGDPGFVGP--EGLAGE 448
Query: 293 LSSWAQLWGEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAG 352
PGP PG GPPG G P G ++G G
Sbjct: 449 ---------------PGP-----PGLPGPPGIGLPGTPGD--PGGPPGPKGDKGSSGIPG 486
Query: 353 WRSPGKSMGDAAAPG--GSLGNPRL--------------RPGRGSANQTPGEAFPSPVSF 396
PG G PG G G+P PG+ PG+ P+
Sbjct: 487 KEGPG---GKPGKPGVKGEKGDPCEVCPTLPEGFQNFVGLPGKPGPKGEPGDPVPARGDP 543
Query: 397 SAAKLRSDRGGPSWSISEL 415
++ ++G P S S +
Sbjct: 544 GIQGIKGEKGEPCLSCSSV 562
Score = 34.3 bits (77), Expect = 0.29
Identities = 80/340 (23%), Positives = 110/340 (32%), Gaps = 71/340 (20%)
Query: 199 APTPPRGKTSFRRQGRGGGGARAISPPPTVCRRGRGRLGWGGAGGQVQDVPDTQVSSDLY 258
+P PP + +G G SP P +G G G G+ P +
Sbjct: 1175 SPGPPGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQGPAGLDGLDGK-DGKPGLRGDPGPA 1233
Query: 259 PSPYLLVGSPEGLQAEQMAGMGVLGPQVEA-LAGELSSWAQLWGEGQAPRPGPAERPFP- 316
P L+ P G + + G+ GP+ + G S + EG+ GP RP P
Sbjct: 1234 GPPGLM--GPPGFKGKT-GHPGLPGPKGDCGKPGPPGSTGRPGAEGEPGAMGPQGRPGPP 1290
Query: 317 GEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRS----------PGKSMGDAAA- 365
G GPPG + L+ + G T G AG PG+ D AA
Sbjct: 1291 GHVGPPGPPGQPGPAGISAVGLKGDRGATGERGLAGLPGQPGPPGHPGPPGEPGTDGAAG 1350
Query: 366 ------------PGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSIS 413
P G G+P +G A + P GGP S S
Sbjct: 1351 KEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMP--------------GGPGKSGS 1396
Query: 414 ELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPR-PGT-----------RWFR 461
V P P R P PS SP GLP PG+ R+ R
Sbjct: 1397 MGPVGP--------PGPAGERGHPGAPGPS--GSP--GLPGVPGSMGDMVNYDEIKRFIR 1444
Query: 462 SFLPRPHSRPLSSHS----LPSPKGCSPPPPVDPGSSAAP 497
+ + ++ ++ P +P P PG AP
Sbjct: 1445 QEIIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGKDGAP 1484
Score = 31.6 bits (70), Expect = 1.9
Identities = 33/110 (30%), Positives = 43/110 (39%), Gaps = 14/110 (12%)
Query: 301 GEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSM 360
G+ R P + GEKG P + S+V G+ L S G + G G+ PG
Sbjct: 534 GDPVPARGDPGIQGIKGEKGEPCLSCSSVVGAQ---HLVSSTGASGDVGSPGFGLPGLP- 589
Query: 361 GDAAAPG--GSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGP 408
G A PG G GN G A P PV A ++ +G P
Sbjct: 590 GRAGVPGLKGEKGN------FGEAGPAGSPGPPGPV--GPAGIKGAKGEP 631
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 45.8 bits (107), Expect = 1e-04
Identities = 96/392 (24%), Positives = 131/392 (33%), Gaps = 81/392 (20%)
Query: 197 GEAPTPPRGKTSFRRQGRGGGGARAISPPPTVCRR-------------GRGRLGWGGAGG 243
G P+ PR K G + S P TV R G LG GGA
Sbjct: 598 GRGPSVPRKKPLPWLGGTRAPPQPSGSRPDTVTLRSAKSEESLSSQASGAELLGAGGAPA 657
Query: 244 QVQDVPDTQVSSDLYPS--PYLLVGSPEGLQ--------AEQMAGMGVLGPQVEALAGEL 293
P L P P LL G+ L ++ G LGP +E+
Sbjct: 658 SATPTPALSPGRSLRPHLIPLLLRGAEAPLTDACQQEMCSKLRGAQGPLGPDMESPLPPP 717
Query: 294 SSWAQLWGEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPI---MLESEAGGTDAAGQ 350
L G AP P P K P A A++ + + E GGT A Q
Sbjct: 718 P--LSLLRPGGAPPPPP--------KNPARLMALALAERAQQVAEQQSQQECGGTPPASQ 767
Query: 351 AGWRSP------GKSMGDAAA--PGGSLGNPR-------------------LRPGRGSAN 383
+ + G+ +G + + P SL +P LR R
Sbjct: 768 SPFHRSLSLEVGGEPLGTSGSGPPPNSLAHPGAWVPGPPPYLPRQQSDGSLLRSQRPMGT 827
Query: 384 QTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPS 443
G P+ VS A+LR+ GG E + S Q+P+ P P
Sbjct: 828 SRRGLRGPAQVS---AQLRAGGGGRD--APEAAAQSPCSVPSQVPTPGFFSPAPRECLPP 882
Query: 444 LLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFK 503
L P GL G F+ P P R PP P+D G + G+ +
Sbjct: 883 FLGVPKPGLYPLGPPSFQPSSPAPVWR----------SSLGPPAPLDRGENLYYEIGASE 932
Query: 504 NQAYPTLPNRRWPSSRSLWTPPNRRSPSSGVV 535
Y + P R W RS+ PP+R + S G++
Sbjct: 933 GSPY-SGPTRSWSPFRSM--PPDRLNASYGML 961
Score = 35.4 bits (80), Expect = 0.13
Identities = 52/202 (25%), Positives = 68/202 (33%), Gaps = 59/202 (29%)
Query: 294 SSWAQLWGEGQAPRPGPAERPFP---GEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQ 350
SSW + G+ P P ++P P G + PP + S L E+ + A+G
Sbjct: 589 SSWKTFFALGRGPSV-PRKKPLPWLGGTRAPPQPSGSRPDTVTLRSAKSEESLSSQASG- 646
Query: 351 AGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSW 410
+ +G AP + P L PGR
Sbjct: 647 ------AELLGAGGAPASATPTPALSPGR------------------------------- 669
Query: 411 SISELSVDPQGSTVKQIPSSLQSREVPPTDA-PSLLASPPSGLPRPGTRWFRSFLPRPHS 469
S+ P IP L+ E P TDA + S G P S LP P
Sbjct: 670 -----SLRPH-----LIPLLLRGAEAPLTDACQQEMCSKLRGAQGPLGPDMESPLPPP-- 717
Query: 470 RPLSSHSLPSPKGCSPPPPVDP 491
PL SL P G PPPP +P
Sbjct: 718 -PL---SLLRPGGAPPPPPKNP 735
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 45.4 bits (106), Expect = 1e-04
Identities = 84/314 (26%), Positives = 110/314 (35%), Gaps = 49/314 (15%)
Query: 214 RGGGGARAISPPPTVCRRGRGRLGWGGAGGQ--VQDVPDTQVSSDLYPSPYLLVGSPEGL 271
RGG G P P + G G GA G +Q +P + P P G P G
Sbjct: 695 RGGAGP----PGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGS-PGPKGDKGEPGGP 749
Query: 272 QAEQMAGM-------GVLGPQVEALAGELSSWAQLWGEG----QAPRPGPAERPFPGEKG 320
A+ + G G +GP AG+ + G PR P ER GE G
Sbjct: 750 GADGVPGKDGPRGPTGPIGPP--GPAGQPGDKGEGGAPGLPGIAGPRGSPGER---GETG 804
Query: 321 PPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLRPGRG 380
PPG A + E GG G G + G G A PGGS P PG
Sbjct: 805 PPGPAGFPGAPGQ-----NGEPGGKGERGAPGEKGEGGPPGVAGPPGGS--GPAGPPGPQ 857
Query: 381 SANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPP-- 438
G SP AA RG P S + P G PS ++ PP
Sbjct: 858 GVKGERG----SPGGPGAAGFPGARGLPGPPGSNGNPGPPG------PSGSPGKDGPPGP 907
Query: 439 ---TDAPSL--LASPPSGLPRPGTRWFRSFLPRPHS-RPLSSHSLPSPKGCSPPPPVDPG 492
T AP ++ P +PG + P + PL + +G + PP + PG
Sbjct: 908 AGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGM-PG 966
Query: 493 SSAAPTSGSFKNQA 506
+P K ++
Sbjct: 967 PRGSPGPQGVKGES 980
Score = 38.9 bits (89), Expect = 0.012
Identities = 28/91 (30%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Query: 306 PRPGPAERPFPGEKGPPGAAASA-VSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAA 364
P P PG++G PG A G P + GG G AG MG
Sbjct: 355 PAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARG 414
Query: 365 APG--GSLGNPRLRPGRGSANQTPGEAFPSP 393
PG G+ G P LR G G + + P P
Sbjct: 415 PPGPAGANGAPGLRGGAGEPGKNGAKGEPGP 445
Score = 38.9 bits (89), Expect = 0.012
Identities = 44/136 (32%), Positives = 56/136 (41%), Gaps = 24/136 (17%)
Query: 268 PEGLQAEQMAGMGVLGPQVEALAGELSSWAQLWGEGQAPRPGP----AERPFPGEKGPPG 323
P+GLQ + G G GP GE + +G A PG + PGE+GPPG
Sbjct: 637 PQGLQG--LPGTG--GPP-----GENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPG 687
Query: 324 -AAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPG--GSLGNP-----RL 375
A A + G P GG AAG G + G PG G LG+P +
Sbjct: 688 LAGAPGLRGGAGP---PGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKG 744
Query: 376 RPGRGSANQTPGEAFP 391
PG A+ PG+ P
Sbjct: 745 EPGGPGADGVPGKDGP 760
Score = 36.6 bits (83), Expect = 0.059
Identities = 53/182 (29%), Positives = 64/182 (35%), Gaps = 33/182 (18%)
Query: 213 GRGGGGARAISPPPTVCRRGRGRLGWGGAGG--QVQDVPDTQVSSDLYPSPYLLVGSPEG 270
G GG A P P + RG G GA G + +P S+ P P GSP
Sbjct: 843 GPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNG-NPGPPGPSGSP-- 899
Query: 271 LQAEQMAGMGVLGPQVEA-LAGELSSWAQLWGEGQAPRPGPAERPFPGEKGPPGAAASAV 329
G GP A G S +G A +PG E+ PG +GPPGA
Sbjct: 900 ---------GKDGPPGPAGNTGAPGSPGVSGPKGDAGQPG--EKGSPGAQGPPGAPG--- 945
Query: 330 SGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEA 389
P+ + G AG G P S G G S G+ AN GE
Sbjct: 946 -----PLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGES--------GKPGANGLSGER 992
Query: 390 FP 391
P
Sbjct: 993 GP 994
Score = 35.0 bits (79), Expect = 0.17
Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 303 GQAPRPG-PAERPFPGEKGPPGAAASAVSG--SWLPIMLESEA-GGTDAAGQAGWRSPGK 358
G+ PG P + PG GPPG S +G ++ P + G G AG+ P
Sbjct: 118 GRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAG 177
Query: 359 SMGDAAAPG--GSLGNPRLRPGRGSANQTPGEAFPS 392
G PG G G+P PG PG+A PS
Sbjct: 178 PPGPPGPPGTSGHPGSPG-SPGYQGPPGEPGQAGPS 212
Score = 33.9 bits (76), Expect = 0.39
Identities = 59/205 (28%), Positives = 70/205 (34%), Gaps = 33/205 (16%)
Query: 306 PRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWR----SPG--KS 359
P P E+ GE+G PG A P E G G G R SPG S
Sbjct: 496 PNGIPGEKGPAGERGAPGPAG--------PRGAAGEPGRDGVPGGPGMRGMPGSPGGPGS 547
Query: 360 MGDAAAPG--GSLGNPRLRPGRGSANQTPG-EAFPSPVSFSAAKLRS-DRGGPSWSISEL 415
G PG G G P PG PG FP P A ++ +RGGP +
Sbjct: 548 DGKPGPPGSQGESGRPG-PPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQ- 605
Query: 416 SVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLP-RPGTRWFRSFLPRPHSRPLSS 474
P G + P P D P GL PGT P + +P
Sbjct: 606 --GPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGT----GGPPGENGKP--- 656
Query: 475 HSLPSPKG--CSPPPPVDPGSSAAP 497
P PKG +P P G + AP
Sbjct: 657 -GEPGPKGDAGAPGAPGGKGDAGAP 680
Score = 33.9 bits (76), Expect = 0.39
Identities = 61/232 (26%), Positives = 69/232 (29%), Gaps = 57/232 (24%)
Query: 306 PRPGPAERPFPGEKGPPGAAAS----AVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMG 361
PR P FPG KG GA G P + G T G G PG G
Sbjct: 571 PRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKG 630
Query: 362 DAAAPG--------------------------GSLGNPRLRPGRGSANQTPGEAFPSPVS 395
D PG G G P G+G A PGE P P
Sbjct: 631 DTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAG-APGERGP-PGL 688
Query: 396 FSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDA--PSLLASP--PSG 451
A LR G P + + P G PP A P L P G
Sbjct: 689 AGAPGLRGGAGPPGPEGGKGAAGPPG---------------PPGAAGTPGLQGMPGERGG 733
Query: 452 LPRPGTRWFRSFLPRPHSRPLSSHSLP-SPKGCSPPP-----PVDPGSSAAP 497
L PG + + P + + P P G PP P D G AP
Sbjct: 734 LGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAP 785
Score = 31.2 bits (69), Expect = 2.5
Identities = 32/108 (29%), Positives = 42/108 (38%), Gaps = 11/108 (10%)
Query: 306 PRPGPAERPFPGEKGPPGAAAS-AVSGSWLPIMLESEAGGTDAAGQAGW-RSPGK--SMG 361
PR P ER PG G GA + GS + + G G AG+ SPG +G
Sbjct: 301 PRGAPGERGRPGLPGAAGARGNDGARGS------DGQPGPPGPPGTAGFPGSPGAKGEVG 354
Query: 362 DAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPS 409
A +P GS G P R G + P P + + GP+
Sbjct: 355 PAGSP-GSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPA 401
Score = 30.0 bits (66), Expect = 5.6
Identities = 60/238 (25%), Positives = 75/238 (31%), Gaps = 44/238 (18%)
Query: 284 PQVEALAGELSSWAQLWGEGQAPRPG-------PAERPFPGEKGPPGAAASAVSGSWLPI 336
P + AGE + G A PG P R PG G PG+ G P
Sbjct: 500 PGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGS-----DGKPGPP 554
Query: 337 MLESEAGGTDAAGQAGWRS-------PGKSMGDAAAPG-----GSLGNPRLRPGRGSANQ 384
+ E+G G +G R PG G+ APG G G P + G +
Sbjct: 555 GSQGESGRPGPPGPSGPRGQPGVMGFPGPK-GNDGAPGKNGERGGPGGPGPQGPPGKNGE 613
Query: 385 TPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSL 444
T + P P K D G P PQG L PP +
Sbjct: 614 TGPQGPPGPTGPGGDK--GDTGPPG---------PQGL------QGLPGTGGPPGENGKP 656
Query: 445 LASPPSG-LPRPGTRWFRSFLPRPHSR-PLSSHSLPSPKGCSPPPPVDPGSSAAPTSG 500
P G PG + P R P P +G + PP + G AA G
Sbjct: 657 GEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPG 714
Score = 29.6 bits (65), Expect = 7.3
Identities = 73/306 (23%), Positives = 92/306 (30%), Gaps = 48/306 (15%)
Query: 200 PTPPRGKTSFRRQGRGGGGARAISPPPTVCRRGRGRLGWGGAGGQVQDVPDTQVSSDLYP 259
P PP + G G + P P G G G G P + S
Sbjct: 881 PGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQ-PGEKGSPGAQG 939
Query: 260 SPYLLVGSPEGLQAEQMAGM-GVLGPQVEALAGELSSWAQLWGEGQAPRPGPAERPFPGE 318
P G+P L + G G+ GP + G S +G++ +PG GE
Sbjct: 940 PP----GAPGPLGIAGITGARGLAGPP--GMPGPRGSPGPQGVKGESGKPGA--NGLSGE 991
Query: 319 KGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLRPG 378
+GPPG P L AG G+ G G +PGG R G
Sbjct: 992 RGPPG-----------PQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGK--GDRGENG 1038
Query: 379 RGSANQTPGEAFPSPVSFSAAKLRSDRG--GPSWSISELSVDPQGSTVKQIPSSLQSREV 436
A PG P P A DRG GP+ P G+ P SR
Sbjct: 1039 SPGAPGAPGHPGP-PGPVGPAGKSGDRGESGPA--------GPAGA-----PGPAGSRGA 1084
Query: 437 PPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKG----CSPPPPVDPG 492
P P G + R F P + P P G P P P
Sbjct: 1085 PGPQGPRGDKGETGERGAAGIKGHRGFPGNP-----GAPGSPGPAGQQGAIGSPGPAGPR 1139
Query: 493 SSAAPT 498
P+
Sbjct: 1140 GPVGPS 1145
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 45.4 bits (106), Expect = 1e-04
Identities = 85/312 (27%), Positives = 110/312 (35%), Gaps = 56/312 (17%)
Query: 224 PPPTVCRRGRGRLGWGGAGGQVQDVPDTQ-------VSSDLYPSPYLLVGSPEGLQAEQ- 275
PP G G+ G GA GQ +P T+ ++ P + G P GL+ E+
Sbjct: 254 PPGERGPEGIGKPGAAGAPGQ-PGIPGTKGLPGAPGIAGPPGPPGFGKPGLP-GLKGERG 311
Query: 276 ----MAGMGVLGPQVEA-LAGELSSWAQLWGEG-QAPRPGPAERPFPGEKGPPGAAASAV 329
G G G Q A L G+ G Q P+ P PG KG G A A
Sbjct: 312 PAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAG 371
Query: 330 SGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEA 389
+ E G + G+ G+ PGK D G GNP L +G
Sbjct: 372 YPG-----AKGERGSPGSDGKPGY--PGKPGLD-----GPKGNPGLPGPKGDPGVGGPPG 419
Query: 390 FPSPVSFSAAK-------LRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAP 442
P PV + AK RG P + + P G + P S P P
Sbjct: 420 LPGPVGPAGAKGMPGHNGEAGPRGAPGIPGTRGPIGPPG--IPGFPGSKGDPGSPGPPGP 477
Query: 443 SLLASP----PSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSAAPT 498
+ +A+ P+G P P PR HS LP P P PP PG + P
Sbjct: 478 AGIATKGLNGPTGPPGPPG-------PRGHS---GEPGLPGP----PGPPGPPGQAVMP- 522
Query: 499 SGSFKNQAYPTL 510
G K P+L
Sbjct: 523 EGFIKAGQRPSL 534
Score = 38.9 bits (89), Expect = 0.012
Identities = 84/350 (24%), Positives = 113/350 (32%), Gaps = 59/350 (16%)
Query: 200 PTPPRGKTSFRRQGRGGGGARAISPPPTVCRRGRGRLGWGGAGGQVQDVPDTQVSSDLYP 259
P+ P GK + G G P P+ G+ G G G+ + D+ P
Sbjct: 76 PSGPPGKPGYGSPGLQGEPGLPGPPGPSAV----GKPGVPGLPGKPGERGPYGPKGDVGP 131
Query: 260 SPYLLVGSPEGLQAEQMAGMGVLGPQVEALAGELSSWAQLWGEGQAPRPGPAERPFPGEK 319
+ P G G+ GP ++ G+ Q P P R FPGEK
Sbjct: 132 AGLPGPRGPPGPP-------GIPGPAGISVPGKPGQ--------QGPTGAPGPRGFPGEK 176
Query: 320 GPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPG-------GSLGN 372
G PG E G G+ G P G + PG G G
Sbjct: 177 GAPGVPGMNGQKG------EMGYGAPGRPGERGLPGPQGPTGPSGPPGVGKRGENGVPGQ 230
Query: 373 PRLRPGRGSANQT-----------PGEAFPSPVSFSAAK-------LRSDRGGPSWSISE 414
P ++ RG + PGE P + A + +G P
Sbjct: 231 PGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGIGKPGAAGAPGQPGIPGTKGLPGAPGIA 290
Query: 415 LSVDPQGSTVKQIPSSLQSREVP---PTDAPSLLASPPSGLP-RPG-TRWFRSFLPRPHS 469
P G +P L+ P P + P+GLP +PG T + P+
Sbjct: 291 GPPGPPGFGKPGLPG-LKGERGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPK 349
Query: 470 RPLSSHSLPSPKGCSPP--PPVDPGSSAAPTS-GSFKNQAYPTLPNRRWP 516
SH LP PKG + P P PG+ S GS YP P P
Sbjct: 350 GIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSDGKPGYPGKPGLDGP 399
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.131 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,821,970
Number of Sequences: 37866
Number of extensions: 1915530
Number of successful extensions: 13646
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 1169
Number of HSP's that attempted gapping in prelim test: 10047
Number of HSP's gapped (non-prelim): 3984
length of query: 537
length of database: 18,247,518
effective HSP length: 107
effective length of query: 430
effective length of database: 14,195,856
effective search space: 6104218080
effective search space used: 6104218080
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.