Guide to the Human Genome
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Name: LOC100129191 Sequence: fasta or formatted (66aa) NCBI GI: 169210432
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {66aa} PREDICTED: hypothetical protein
alt mRNA {66aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1          6           1
 C cysteine            1.5          1           1
 D aspartate           4.5          3           1
 E glutamate          12.1          8           2
 F phenylalanine       3.0          2           1
 G glycine            15.2         10           2
 H histidine           3.0          2           1
 I isoleucine          0.0          0           0
 K lysine              1.5          1           1
 L leucine             1.5          1           1
 M methionine          1.5          1           1
 N asparagine          6.1          4           2
 P proline            13.6          9           2
 Q glutamine          10.6          7           2
 R arginine            7.6          5           1
 S serine              7.6          5           2
 T threonine           1.5          1           1
 V valine              0.0          0           0
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129191          1.000   PREDICTED: hypothetical protein 
LOC100129191          1.000   PREDICTED: hypothetical protein 
WDR33                 0.092   WD repeat domain 33 isoform 1 
POLR3E                0.067   polymerase (RNA) III (DNA directed) polypeptide E [Ho...
LOC728804             0.058   PREDICTED: hypothetical protein 
HNRNPUL1              0.050   heterogeneous nuclear ribonucleoprotein U-like 1 iso...
HNRNPUL1              0.050   heterogeneous nuclear ribonucleoprotein U-like 1 iso...
JSRP1                 0.050   junctional sarcoplasmic reticulum protein 1 
PAXIP1                0.050   PAX interacting protein 1 
LOC100290372          0.042   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.042   PREDICTED: hypothetical protein XP_002342652 
E2F5                  0.042   E2F transcription factor 5 isoform 2 
E2F5                  0.042   E2F transcription factor 5 isoform 1 
PRH1                  0.042   proline-rich protein HaeIII subfamily 1 
PRH2                  0.042   proline-rich protein HaeIII subfamily 2 
PRH2                  0.042   proline-rich protein HaeIII subfamily 2 
COL27A1               0.042   collagen, type XXVII, alpha 1 
CACNA1B               0.033   calcium channel, voltage-dependent, N type, alpha 1B ...
RCSD1                 0.033   RCSD domain containing 1 
CACNA1I               0.033   calcium channel, voltage-dependent, T type, alpha 1I...
LOC100129129          0.033   PREDICTED: hypothetical protein 
LOC388079             0.033   PREDICTED: similar to hCG2042704 
LOC100294344          0.033   PREDICTED: similar to mitogen-activated protein kin...
MAPK8IP1              0.033   mitogen-activated protein kinase 8 interacting protei...
ATOH1                 0.033   atonal homolog 1 
TULP1                 0.033   tubby like protein 1 
LOC728056             0.025   PREDICTED: similar to IQ motif and SEC7 domain-cont...
LOC100292757          0.025   PREDICTED: hypothetical protein 
LOC100291505          0.025   PREDICTED: hypothetical protein XP_002347172 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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