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Search of human proteins with 239750635
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750635 PREDICTED: hypothetical protein XP_002347460 [Homo
sapiens]
(153 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756106 PREDICTED: hypothetical protein [Homo sapiens] 325 7e-90
gi|239750635 PREDICTED: hypothetical protein XP_002347460 [Homo ... 325 7e-90
gi|239744944 PREDICTED: hypothetical protein XP_002343314 [Homo ... 325 7e-90
gi|47524167 ribosomal protein P1 isoform 2 [Homo sapiens] 129 1e-30
gi|4506669 ribosomal protein P1 isoform 1 [Homo sapiens] 115 1e-26
gi|4506671 ribosomal protein P2 [Homo sapiens] 51 4e-07
gi|4506667 ribosomal protein P0 [Homo sapiens] 42 2e-04
gi|16933546 ribosomal protein P0 [Homo sapiens] 42 2e-04
gi|17986273 fast skeletal myosin alkali light chain 1 isoform 1f... 34 0.056
gi|5031579 A-kinase anchor protein 8 [Homo sapiens] 33 0.073
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 33 0.095
gi|13376146 zinc finger and BTB domain containing 3 [Homo sapiens] 33 0.12
gi|30102940 otopetrin 3 [Homo sapiens] 32 0.21
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 32 0.28
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 32 0.28
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ... 32 0.28
gi|130502140 NEZHA isoform 2 [Homo sapiens] 31 0.36
gi|122937255 NEZHA isoform 1 [Homo sapiens] 31 0.36
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 31 0.36
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens] 30 0.62
gi|4557038 atrial/embryonic alkali myosin light chain [Homo sapi... 30 0.62
gi|50845428 atrial/embryonic alkali myosin light chain [Homo sap... 30 0.62
gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens] 30 0.62
gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens] 30 0.62
gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens] 30 0.62
gi|153791535 general control of amino acid synthesis 5-like 2 [H... 30 0.81
gi|18699730 solute carrier family 16, member 10 [Homo sapiens] 30 0.81
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 30 1.1
gi|161019170 mucin 5AC [Homo sapiens] 30 1.1
gi|30795231 brain abundant, membrane attached signal protein 1 [... 30 1.1
>gi|239756106 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 325 bits (834), Expect = 7e-90
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MINQNLEECVHEKNTICKNATAIKKNRLTIHNSLRGSCIPYYFSHSCLLTEMTNWQHQPC 60
MINQNLEECVHEKNTICKNATAIKKNRLTIHNSLRGSCIPYYFSHSCLLTEMTNWQHQPC
Sbjct: 1 MINQNLEECVHEKNTICKNATAIKKNRLTIHNSLRGSCIPYYFSHSCLLTEMTNWQHQPC 60
Query: 61 TRPHHGLHLKFFCISLDLILHDNEVTITVVANVNIRSFICNVGAGGPAPTVGAAPAEGPA 120
TRPHHGLHLKFFCISLDLILHDNEVTITVVANVNIRSFICNVGAGGPAPTVGAAPAEGPA
Sbjct: 61 TRPHHGLHLKFFCISLDLILHDNEVTITVVANVNIRSFICNVGAGGPAPTVGAAPAEGPA 120
Query: 121 PTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD 153
PTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD
Sbjct: 121 PTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD 153
>gi|239750635 PREDICTED: hypothetical protein XP_002347460 [Homo
sapiens]
Length = 153
Score = 325 bits (834), Expect = 7e-90
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MINQNLEECVHEKNTICKNATAIKKNRLTIHNSLRGSCIPYYFSHSCLLTEMTNWQHQPC 60
MINQNLEECVHEKNTICKNATAIKKNRLTIHNSLRGSCIPYYFSHSCLLTEMTNWQHQPC
Sbjct: 1 MINQNLEECVHEKNTICKNATAIKKNRLTIHNSLRGSCIPYYFSHSCLLTEMTNWQHQPC 60
Query: 61 TRPHHGLHLKFFCISLDLILHDNEVTITVVANVNIRSFICNVGAGGPAPTVGAAPAEGPA 120
TRPHHGLHLKFFCISLDLILHDNEVTITVVANVNIRSFICNVGAGGPAPTVGAAPAEGPA
Sbjct: 61 TRPHHGLHLKFFCISLDLILHDNEVTITVVANVNIRSFICNVGAGGPAPTVGAAPAEGPA 120
Query: 121 PTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD 153
PTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD
Sbjct: 121 PTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD 153
>gi|239744944 PREDICTED: hypothetical protein XP_002343314 [Homo
sapiens]
Length = 153
Score = 325 bits (834), Expect = 7e-90
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MINQNLEECVHEKNTICKNATAIKKNRLTIHNSLRGSCIPYYFSHSCLLTEMTNWQHQPC 60
MINQNLEECVHEKNTICKNATAIKKNRLTIHNSLRGSCIPYYFSHSCLLTEMTNWQHQPC
Sbjct: 1 MINQNLEECVHEKNTICKNATAIKKNRLTIHNSLRGSCIPYYFSHSCLLTEMTNWQHQPC 60
Query: 61 TRPHHGLHLKFFCISLDLILHDNEVTITVVANVNIRSFICNVGAGGPAPTVGAAPAEGPA 120
TRPHHGLHLKFFCISLDLILHDNEVTITVVANVNIRSFICNVGAGGPAPTVGAAPAEGPA
Sbjct: 61 TRPHHGLHLKFFCISLDLILHDNEVTITVVANVNIRSFICNVGAGGPAPTVGAAPAEGPA 120
Query: 121 PTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD 153
PTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD
Sbjct: 121 PTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD 153
>gi|47524167 ribosomal protein P1 isoform 2 [Homo sapiens]
Length = 89
Score = 129 bits (324), Expect = 1e-30
Identities = 63/81 (77%), Positives = 67/81 (82%)
Query: 73 CISLDLILHDNEVTITVVANVNIRSFICNVGAGGPAPTVGAAPAEGPAPTTTAAPAEEKK 132
CI LILHD+EVT+T +ANVNI S ICNVGAGGPAP GAAPA GPAP+T AAPAEEKK
Sbjct: 9 CIYSALILHDDEVTVTALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKK 68
Query: 133 VETKKEEPEEYDDDMDFGLFD 153
VE KKEE EE DDDM FGLFD
Sbjct: 69 VEAKKEESEESDDDMGFGLFD 89
>gi|4506669 ribosomal protein P1 isoform 1 [Homo sapiens]
Length = 114
Score = 115 bits (288), Expect = 1e-26
Identities = 63/106 (59%), Positives = 67/106 (63%), Gaps = 25/106 (23%)
Query: 73 CISLDLILHDNEVTIT-------------------------VVANVNIRSFICNVGAGGP 107
CI LILHD+EVT+T +ANVNI S ICNVGAGGP
Sbjct: 9 CIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGP 68
Query: 108 APTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD 153
AP GAAPA GPAP+T AAPAEEKKVE KKEE EE DDDM FGLFD
Sbjct: 69 APAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
>gi|4506671 ribosomal protein P2 [Homo sapiens]
Length = 115
Score = 50.8 bits (120), Expect = 4e-07
Identities = 29/55 (52%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 99 ICNVGAGGPAPTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD 153
+ +V AGG A + PA + A AEEKK E KKEE EE DDDM FGLFD
Sbjct: 62 LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDE-KKEESEESDDDMGFGLFD 115
>gi|4506667 ribosomal protein P0 [Homo sapiens]
Length = 317
Score = 42.4 bits (98), Expect = 2e-04
Identities = 24/47 (51%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 107 PAPTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD 153
P+ V AAP AA A KVE K EE EE D+DM FGLFD
Sbjct: 272 PSAFVAAAPVAAATTAAPAAAAAPAKVEAK-EESEESDEDMGFGLFD 317
>gi|16933546 ribosomal protein P0 [Homo sapiens]
Length = 317
Score = 42.4 bits (98), Expect = 2e-04
Identities = 24/47 (51%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 107 PAPTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD 153
P+ V AAP AA A KVE K EE EE D+DM FGLFD
Sbjct: 272 PSAFVAAAPVAAATTAAPAAAAAPAKVEAK-EESEESDEDMGFGLFD 317
>gi|17986273 fast skeletal myosin alkali light chain 1 isoform 1f
[Homo sapiens]
Length = 194
Score = 33.9 bits (76), Expect = 0.056
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
Query: 107 PAPTVGAAPAEGPAPTTTAAPAEEK---------KVETKKEEPEEYDDDMDFGLFD 153
P AAPA PAP APA+ K K+E KE+ +E+ + F LFD
Sbjct: 10 PVAAAAAAPAPAPAPAPAPAPAKPKEEKIDLSAIKIEFSKEQQDEFKE--AFLLFD 63
>gi|5031579 A-kinase anchor protein 8 [Homo sapiens]
Length = 692
Score = 33.5 bits (75), Expect = 0.073
Identities = 20/56 (35%), Positives = 24/56 (42%)
Query: 84 EVTITVVANVNIRSFICNVGAGGPAPTVGAAPAEGPAPTTTAAPAEEKKVETKKEE 139
EV V+A V + G G PAP PAE PT TA + + E EE
Sbjct: 572 EVAADVLAEVITAAVRAVDGEGAPAPESSGEPAEDEGPTDTAEAGSDPQAEQLLEE 627
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 33.1 bits (74), Expect = 0.095
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 106 GPAPTVGAAPAEGPAPTTTAAPAEEKKVETKKEEP 140
GP T A+P P P TT P +E V +K + P
Sbjct: 695 GPVSTTDASPQSPPTPQTTLTPLQESPVISKDQSP 729
>gi|13376146 zinc finger and BTB domain containing 3 [Homo sapiens]
Length = 574
Score = 32.7 bits (73), Expect = 0.12
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 108 APTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEEYDDDMD 148
APT AP P P+ APAE + V+ K E D++ D
Sbjct: 327 APTSAPAPVSAPVPSQAPAPAEAELVQVKVEAIVISDEETD 367
>gi|30102940 otopetrin 3 [Homo sapiens]
Length = 596
Score = 32.0 bits (71), Expect = 0.21
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 107 PAPTVGAAPAEGPAPTTTAAPAEEKKVETKKEE 139
P T+ +APA G A T AAP +E +V+ EE
Sbjct: 24 PGRTIRSAPAVGEAQETEAAPEKENRVDVGAEE 56
>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 31.6 bits (70), Expect = 0.28
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 102 VGAGGPAPTVGAAPAEGPAPTTTAAPAE 129
V A PAP APA PAP AAP E
Sbjct: 184 VAAPAPAPAPAPAPAPAPAPAPDAAPQE 211
Score = 30.8 bits (68), Expect = 0.47
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 104 AGGPAPTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEE 142
A PAP AAPA PAP APA + +E E
Sbjct: 176 APAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAE 214
Score = 28.1 bits (61), Expect = 3.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 107 PAPTVGAAPAEGPAPTTTAAPA 128
PAP APA PAP APA
Sbjct: 169 PAPAPAPAPAPAPAPVAAPAPA 190
Score = 26.9 bits (58), Expect = 6.8
Identities = 12/21 (57%), Positives = 12/21 (57%)
Query: 108 APTVGAAPAEGPAPTTTAAPA 128
AP APA PAP AAPA
Sbjct: 168 APAPAPAPAPAPAPAPVAAPA 188
Score = 26.9 bits (58), Expect = 6.8
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 104 AGGPAPTVGAAPAEGPAPTTTAAPA 128
A PAP AP PAP APA
Sbjct: 172 APAPAPAPAPAPVAAPAPAPAPAPA 196
Score = 26.9 bits (58), Expect = 6.8
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 104 AGGPAPTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEEYDDDMDFGL 151
A PAP APA PAP + E+ + E D + G+
Sbjct: 188 APAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQLHSGI 235
>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 31.6 bits (70), Expect = 0.28
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 102 VGAGGPAPTVGAAPAEGPAPTTTAAPAE 129
V A PAP APA PAP AAP E
Sbjct: 184 VAAPAPAPAPAPAPAPAPAPAPDAAPQE 211
Score = 30.8 bits (68), Expect = 0.47
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 104 AGGPAPTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEE 142
A PAP AAPA PAP APA + +E E
Sbjct: 176 APAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAE 214
Score = 28.1 bits (61), Expect = 3.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 107 PAPTVGAAPAEGPAPTTTAAPA 128
PAP APA PAP APA
Sbjct: 169 PAPAPAPAPAPAPAPVAAPAPA 190
Score = 26.9 bits (58), Expect = 6.8
Identities = 12/21 (57%), Positives = 12/21 (57%)
Query: 108 APTVGAAPAEGPAPTTTAAPA 128
AP APA PAP AAPA
Sbjct: 168 APAPAPAPAPAPAPAPVAAPA 188
Score = 26.9 bits (58), Expect = 6.8
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 104 AGGPAPTVGAAPAEGPAPTTTAAPA 128
A PAP AP PAP APA
Sbjct: 172 APAPAPAPAPAPVAAPAPAPAPAPA 196
Score = 26.9 bits (58), Expect = 6.8
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 104 AGGPAPTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEEYDDDMDFGL 151
A PAP APA PAP + E+ + E D + G+
Sbjct: 188 APAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQLHSGI 235
>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
sapiens]
Length = 316
Score = 31.6 bits (70), Expect = 0.28
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 102 VGAGGPAPTVGAAPAEGPAPTTTAAPAE 129
V A PAP APA PAP AAP E
Sbjct: 195 VAAPAPAPAPAPAPAPAPAPAPDAAPQE 222
Score = 30.8 bits (68), Expect = 0.47
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 104 AGGPAPTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEE 142
A PAP AAPA PAP APA + +E E
Sbjct: 187 APAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAE 225
Score = 28.1 bits (61), Expect = 3.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 107 PAPTVGAAPAEGPAPTTTAAPA 128
PAP APA PAP APA
Sbjct: 180 PAPAPAPAPAPAPAPVAAPAPA 201
Score = 26.9 bits (58), Expect = 6.8
Identities = 12/21 (57%), Positives = 12/21 (57%)
Query: 108 APTVGAAPAEGPAPTTTAAPA 128
AP APA PAP AAPA
Sbjct: 179 APAPAPAPAPAPAPAPVAAPA 199
Score = 26.9 bits (58), Expect = 6.8
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 104 AGGPAPTVGAAPAEGPAPTTTAAPA 128
A PAP AP PAP APA
Sbjct: 183 APAPAPAPAPAPVAAPAPAPAPAPA 207
Score = 26.9 bits (58), Expect = 6.8
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 104 AGGPAPTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEEYDDDMDFGL 151
A PAP APA PAP + E+ + E D + G+
Sbjct: 199 APAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQLHSGI 246
>gi|130502140 NEZHA isoform 2 [Homo sapiens]
Length = 1249
Score = 31.2 bits (69), Expect = 0.36
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 104 AGGPAPTVGAAPAEGPAPTTTAAPAEEKKVETKKE-EPEEYDDDMDFGLFD 153
A GPAP V A P PAP APAEE+ K + +EY+ L D
Sbjct: 943 APGPAPLVSAVPMATPAP-AARAPAEEEVGPRKGDFTRQEYERRAQLKLMD 992
>gi|122937255 NEZHA isoform 1 [Homo sapiens]
Length = 1276
Score = 31.2 bits (69), Expect = 0.36
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 104 AGGPAPTVGAAPAEGPAPTTTAAPAEEKKVETKKE-EPEEYDDDMDFGLFD 153
A GPAP V A P PAP APAEE+ K + +EY+ L D
Sbjct: 970 APGPAPLVSAVPMATPAP-AARAPAEEEVGPRKGDFTRQEYERRAQLKLMD 1019
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo
sapiens]
Length = 2161
Score = 31.2 bits (69), Expect = 0.36
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 101 NVGAGGPAPTVGAAPAEGPAPTTTAAPAEEKKV 133
N G+GGP P A +GP+P T + EK +
Sbjct: 955 NPGSGGPLPASSPASFDGPSPPDTRVGSREKSL 987
>gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]
Length = 1759
Score = 30.4 bits (67), Expect = 0.62
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 104 AGGPAPTVGAAPAEGPAPTTTAAPAEEKKVETKKEE----PEEYDDDMD 148
AG P P AAP AA A E E ++EE EE +DD D
Sbjct: 1646 AGDPGPPDAAAPGPREGAAAAAAAAGESSQEDEEEELELPEEEAEDDED 1694
Score = 28.1 bits (61), Expect = 3.1
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 104 AGGPAPTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEEYDDDMD 148
A P P GAA A A ++ EE+++E +EE E+ +D+ D
Sbjct: 1654 AAAPGPREGAAAAAAAAGESSQED-EEEELELPEEEAEDDEDEDD 1697
>gi|4557038 atrial/embryonic alkali myosin light chain [Homo
sapiens]
Length = 197
Score = 30.4 bits (67), Expect = 0.62
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 107 PAPTVGAAPAEGPAPTTTAAPA---EEKKVETKKEEPEEYDDDMDFGLFD 153
PAP APA PAP PA + K++ ++ EE+ + F LFD
Sbjct: 17 PAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKE--AFSLFD 64
>gi|50845428 atrial/embryonic alkali myosin light chain [Homo
sapiens]
Length = 197
Score = 30.4 bits (67), Expect = 0.62
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 107 PAPTVGAAPAEGPAPTTTAAPA---EEKKVETKKEEPEEYDDDMDFGLFD 153
PAP APA PAP PA + K++ ++ EE+ + F LFD
Sbjct: 17 PAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKE--AFSLFD 64
>gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens]
Length = 170
Score = 30.4 bits (67), Expect = 0.62
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 103 GAGGPAPTVGAAPAEGPA-PTTTAAPAEEKKVETKKEEPEEYDDD 146
G G G EGP P A AEE+ VE ++EE ++ D +
Sbjct: 79 GLGELGEPAGPGEPEGPGDPAAAPAEAEEQAVEARQEEEQDLDGE 123
>gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens]
Length = 177
Score = 30.4 bits (67), Expect = 0.62
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 103 GAGGPAPTVGAAPAEGPA-PTTTAAPAEEKKVETKKEEPEEYDDD 146
G G G EGP P A AEE+ VE ++EE ++ D +
Sbjct: 79 GLGELGEPAGPGEPEGPGDPAAAPAEAEEQAVEARQEEEQDLDGE 123
>gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens]
Length = 204
Score = 30.4 bits (67), Expect = 0.62
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 103 GAGGPAPTVGAAPAEGPA-PTTTAAPAEEKKVETKKEEPEEYDDD 146
G G G EGP P A AEE+ VE ++EE ++ D +
Sbjct: 79 GLGELGEPAGPGEPEGPGDPAAAPAEAEEQAVEARQEEEQDLDGE 123
>gi|153791535 general control of amino acid synthesis 5-like 2 [Homo
sapiens]
Length = 837
Score = 30.0 bits (66), Expect = 0.81
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 104 AGGPAPTVGAAPAEGPAPTTTAAPA 128
A P PT +PA P PT T APA
Sbjct: 23 APAPTPTPAPSPASAPIPTPTPAPA 47
>gi|18699730 solute carrier family 16, member 10 [Homo sapiens]
Length = 515
Score = 30.0 bits (66), Expect = 0.81
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 106 GPAPTVGAAPAEGPAPTTTAAPAEEK 131
GPAPT GAAP GP P+ + A EK
Sbjct: 21 GPAPT-GAAPPPGPGPSDSPEAAVEK 45
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 29.6 bits (65), Expect = 1.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 103 GAGGPAPTVGAAPAEGPAPTTTAAPAEEK 131
G G P + GA PA GP P AP +++
Sbjct: 6 GGGRPGESPGATPAPGPPPPPPPAPPQQQ 34
Score = 26.6 bits (57), Expect = 8.9
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 97 SFICNVGAGGPAPTVGAAPAEGPAPTTTAAPAEEKK 132
SF C A GPAP G PAE A + A PA E +
Sbjct: 124 SFSCRGAASGPAP--GPGPAE-EAGSEEAGPAGEPR 156
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 29.6 bits (65), Expect = 1.1
Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 14/119 (11%)
Query: 8 ECVHEKNTICKNATAIKKNRLTIHNSLRGSCIPYYFSHSCLLTEMTNWQHQPCTRPHHGL 67
EC + +C+N + K ++ + +R C Y C T T+ P + P
Sbjct: 4665 ECSLDFGLVCRNREQVGKFKMCFNYEIRVFCCNY---GHCPSTPATSSTAMPSSTP---- 4717
Query: 68 HLKFFCISLDLILHDNEVTITVVANVNIRSFICNVGAGGPAPTVGAAPAEGPAPTTTAA 126
IL + T T A+ + + P P V +PA P T++ A
Sbjct: 4718 -------GTTWILTELTTTATTTASTGSTATPSSTPGTAPPPKVLTSPATTPTATSSKA 4769
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 29.6 bits (65), Expect = 1.1
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 104 AGGPAPTVG---AAPAEGPAPTTTAAPAEEKKVETKKEEP 140
AGG AP AAPAE AP P++E+ K E P
Sbjct: 115 AGGEAPKAAEAAAAPAESAAPAAGEEPSKEEGEPKKTEAP 154
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,057,282
Number of Sequences: 37866
Number of extensions: 347955
Number of successful extensions: 3668
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 3200
Number of HSP's gapped (non-prelim): 483
length of query: 153
length of database: 18,247,518
effective HSP length: 93
effective length of query: 60
effective length of database: 14,725,980
effective search space: 883558800
effective search space used: 883558800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.