BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239750551 PREDICTED: hypothetical protein [Homo sapiens] (196 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239756058 PREDICTED: hypothetical protein XP_002344788 [Homo ... 418 e-117 gi|239750551 PREDICTED: hypothetical protein [Homo sapiens] 418 e-117 gi|239744848 PREDICTED: hypothetical protein XP_002344119 [Homo ... 418 e-117 gi|110832843 TBP-associated factor 4 [Homo sapiens] 42 4e-04 gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo ... 38 0.005 gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 37 0.008 gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 37 0.008 gi|118344450 cell death inducing protein [Homo sapiens] 37 0.008 gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 37 0.011 gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 37 0.014 gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap... 37 0.014 gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 37 0.014 gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens] 37 0.014 gi|239743839 PREDICTED: hypothetical protein XP_002342967 [Homo ... 36 0.024 gi|42544123 splicing factor 1 isoform 3 [Homo sapiens] 36 0.024 gi|18959210 WIRE protein [Homo sapiens] 36 0.024 gi|130502140 NEZHA isoform 2 [Homo sapiens] 35 0.031 gi|122937255 NEZHA isoform 1 [Homo sapiens] 35 0.031 gi|10863899 numb homolog (Drosophila)-like [Homo sapiens] 35 0.031 gi|45387951 transmembrane protein 108 [Homo sapiens] 35 0.031 gi|210147493 transmembrane protein 108 [Homo sapiens] 35 0.031 gi|171543895 ataxin 2 [Homo sapiens] 35 0.041 gi|228008410 BEN domain containing 4 isoform b [Homo sapiens] 35 0.041 gi|148762950 BEN domain containing 4 isoform a [Homo sapiens] 35 0.041 gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 35 0.053 gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 34 0.070 gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 34 0.070 gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 34 0.070 gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 34 0.070 gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 34 0.070 >gi|239756058 PREDICTED: hypothetical protein XP_002344788 [Homo sapiens] Length = 196 Score = 418 bits (1074), Expect = e-117 Identities = 196/196 (100%), Positives = 196/196 (100%) Query: 1 MHCHRFPHNNRWFLHTKGREMLQQTLESAASSYAFFCEGPVPKLLGGSKCAFYLLCHLHR 60 MHCHRFPHNNRWFLHTKGREMLQQTLESAASSYAFFCEGPVPKLLGGSKCAFYLLCHLHR Sbjct: 1 MHCHRFPHNNRWFLHTKGREMLQQTLESAASSYAFFCEGPVPKLLGGSKCAFYLLCHLHR 60 Query: 61 GQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEG 120 GQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEG Sbjct: 61 GQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEG 120 Query: 121 AGRGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSAAATTALGS 180 AGRGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSAAATTALGS Sbjct: 121 AGRGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSAAATTALGS 180 Query: 181 RRRCLRAEPAAAAAPN 196 RRRCLRAEPAAAAAPN Sbjct: 181 RRRCLRAEPAAAAAPN 196 >gi|239750551 PREDICTED: hypothetical protein [Homo sapiens] Length = 196 Score = 418 bits (1074), Expect = e-117 Identities = 196/196 (100%), Positives = 196/196 (100%) Query: 1 MHCHRFPHNNRWFLHTKGREMLQQTLESAASSYAFFCEGPVPKLLGGSKCAFYLLCHLHR 60 MHCHRFPHNNRWFLHTKGREMLQQTLESAASSYAFFCEGPVPKLLGGSKCAFYLLCHLHR Sbjct: 1 MHCHRFPHNNRWFLHTKGREMLQQTLESAASSYAFFCEGPVPKLLGGSKCAFYLLCHLHR 60 Query: 61 GQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEG 120 GQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEG Sbjct: 61 GQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEG 120 Query: 121 AGRGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSAAATTALGS 180 AGRGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSAAATTALGS Sbjct: 121 AGRGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSAAATTALGS 180 Query: 181 RRRCLRAEPAAAAAPN 196 RRRCLRAEPAAAAAPN Sbjct: 181 RRRCLRAEPAAAAAPN 196 >gi|239744848 PREDICTED: hypothetical protein XP_002344119 [Homo sapiens] Length = 196 Score = 418 bits (1074), Expect = e-117 Identities = 196/196 (100%), Positives = 196/196 (100%) Query: 1 MHCHRFPHNNRWFLHTKGREMLQQTLESAASSYAFFCEGPVPKLLGGSKCAFYLLCHLHR 60 MHCHRFPHNNRWFLHTKGREMLQQTLESAASSYAFFCEGPVPKLLGGSKCAFYLLCHLHR Sbjct: 1 MHCHRFPHNNRWFLHTKGREMLQQTLESAASSYAFFCEGPVPKLLGGSKCAFYLLCHLHR 60 Query: 61 GQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEG 120 GQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEG Sbjct: 61 GQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEG 120 Query: 121 AGRGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSAAATTALGS 180 AGRGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSAAATTALGS Sbjct: 121 AGRGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSAAATTALGS 180 Query: 181 RRRCLRAEPAAAAAPN 196 RRRCLRAEPAAAAAPN Sbjct: 181 RRRCLRAEPAAAAAPN 196 >gi|110832843 TBP-associated factor 4 [Homo sapiens] Length = 1085 Score = 41.6 bits (96), Expect = 4e-04 Identities = 39/149 (26%), Positives = 50/149 (33%), Gaps = 38/149 (25%) Query: 64 SPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPP--------GQWRTPG 115 +P PPPPPA + + PP G P+ PP+A PP P Sbjct: 265 APAAAPPPPPPAPATLARPP-----GHPAGPPTAA-----PAVPPPAAAQNGGSAGAAPA 314 Query: 116 DEPEGAGRGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPP------- 168 P G GV P G A APAP + + + PP Sbjct: 315 PAPAAGGPAGVSGQPG-----------PGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAA 363 Query: 169 --PPSAAATTALGSRRRCLRAEPAAAAAP 195 P S AA+ +G + PAA P Sbjct: 364 SGPASTAASMVIGPTMQGALPSPAAVPPP 392 Score = 30.4 bits (67), Expect = 1.0 Identities = 43/144 (29%), Positives = 52/144 (36%), Gaps = 13/144 (9%) Query: 61 GQLSPTQLWPPPPPASSGSSHP---PAWVRAGRPSPPPS-----ALLLAVFTTFPPGQWR 112 G P PPP S+GS P A V AG P P P+ A A+ PG Sbjct: 118 GPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAG-PEPAPAGPAKPAGPAALAARAGPGPGP 176 Query: 113 TPGDEPEGAGRGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSA 172 PG P G G G A ++ APA L+ L P P A Sbjct: 177 GPGPGP-GPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALL---PLPKPA 232 Query: 173 AATTALGSRRRCLRAEPAAAAAPN 196 A T + + A P A AAP+ Sbjct: 233 APGTVIQTPPFVGAAAPPAPAAPS 256 >gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo sapiens] Length = 439 Score = 38.1 bits (87), Expect = 0.005 Identities = 43/149 (28%), Positives = 55/149 (36%), Gaps = 15/149 (10%) Query: 50 CAFYLLCHLHRGQLSPTQLWPPPPPASSGSSHPPAWV--RAGRPSPPPSALL--LAVFTT 105 C FY LC G P+ PPP + P W+ R G PP A Sbjct: 20 CLFYALC-TRLGDSGPSS----PPPVRPSGNPEPGWLESREGLAHPPQGLAPPPTAGNRP 74 Query: 106 FPPGQWRTPGDEPE-GAGRGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLL 164 P + P PE GAGR G A + +R + VR A+ R R R + Sbjct: 75 HPTRKCTFPVPSPELGAGREGEVAGVSACGRRCAVLGVRAAARGQLNSRTAPRDRHRGV- 133 Query: 165 RCPPPPSAAATTALGSRRRCLRAEPAAAA 193 P TALG+ LR+ P A + Sbjct: 134 ----GPDPGRETALGTATLSLRSSPTAGS 158 >gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] Length = 378 Score = 37.4 bits (85), Expect = 0.008 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Query: 65 PTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEGAG 122 P +W P A G PPA GR +PPP + + PPG + P P+G G Sbjct: 232 PQGMWVPAGQAIGGYGPPPA----GRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYG 285 >gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] Length = 407 Score = 37.4 bits (85), Expect = 0.008 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Query: 65 PTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEGAG 122 P +W P A G PPA GR +PPP + + PPG + P P+G G Sbjct: 232 PQGMWVPAGQAIGGYGPPPA----GRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYG 285 >gi|118344450 cell death inducing protein [Homo sapiens] Length = 208 Score = 37.4 bits (85), Expect = 0.008 Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 10/65 (15%) Query: 61 GQLSPTQLWPPP----PPASSGSSHPPAWVRAGRPSPPPSAL---LLAVFTTFPPGQWRT 113 G+ SP + PPP PPA G PP + G P P P + + A T PPG + Sbjct: 29 GRSSPAVMQPPPGMPLPPADIG---PPPYEPPGHPMPQPGFIPPHMSADGTYMPPGFYPP 85 Query: 114 PGDEP 118 PG P Sbjct: 86 PGPHP 90 >gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sapiens] Length = 505 Score = 37.0 bits (84), Expect = 0.011 Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 70 PPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQ 110 PPPPP +SG PPA R G P PPPS A PP + Sbjct: 290 PPPPPHNSGPPPPPARGR-GAPPPPPSRAPTAAPPPPPPSR 329 Score = 35.8 bits (81), Expect = 0.024 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 8/68 (11%) Query: 65 PTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLA-VFTTFPPGQWRTPG-DEPEGAG 122 P +++PPPPPA P+ +G P PPPS L + V PP PG P G Sbjct: 339 PNRMYPPPPPAL------PSSAPSGPPPPPPSVLGVGPVAPPPPPPPPPPPGPPPPPGLP 392 Query: 123 RGGVHASP 130 G H P Sbjct: 393 SDGDHQVP 400 Score = 33.9 bits (76), Expect = 0.091 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 11/66 (16%) Query: 65 PTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEGAGRG 124 P++ PPPPP +S PP GR +PPP PP + T P R Sbjct: 282 PSRGGPPPPPPPPHNSGPPPPPARGRGAPPP-----------PPSRAPTAAPPPPPPSRP 330 Query: 125 GVHASP 130 V P Sbjct: 331 SVAVPP 336 Score = 30.8 bits (68), Expect = 0.77 Identities = 12/27 (44%), Positives = 14/27 (51%) Query: 70 PPPPPASSGSSHPPAWVRAGRPSPPPS 96 PPPPP+ G PP P PPP+ Sbjct: 278 PPPPPSRGGPPPPPPPPHNSGPPPPPA 304 Score = 30.4 bits (67), Expect = 1.0 Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 8/64 (12%) Query: 65 PTQLWPPPPPA-SSGSSHPP--AWVRAGRPSPPPSALLLAV-----FTTFPPGQWRTPGD 116 P PPPPPA G+ PP A P PPPS +AV +PP P Sbjct: 294 PHNSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPSVAVPPPPPNRMYPPPPPALPSS 353 Query: 117 EPEG 120 P G Sbjct: 354 APSG 357 Score = 30.4 bits (67), Expect = 1.0 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 8/67 (11%) Query: 64 SPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEGAGR 123 +PT PPPPP+ + PP P PPP A+ ++ P G P P G Sbjct: 317 APTAAPPPPPPSRPSVAVPPPPPNRMYPPPPP-----ALPSSAPSG---PPPPPPSVLGV 368 Query: 124 GGVHASP 130 G V P Sbjct: 369 GPVAPPP 375 >gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] Length = 1388 Score = 36.6 bits (83), Expect = 0.014 Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 8/63 (12%) Query: 61 GQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSP--------PPSALLLAVFTTFPPGQWR 112 GQ T + P PP + G PP + R G P P PP+ L AV PPG Sbjct: 1065 GQKGETVVGPQGPPGAPGLPGPPGFGRPGDPGPPGPPGPPGPPAILGAAVALPGPPGPPG 1124 Query: 113 TPG 115 PG Sbjct: 1125 QPG 1127 >gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sapiens] Length = 1747 Score = 36.6 bits (83), Expect = 0.014 Identities = 39/133 (29%), Positives = 49/133 (36%), Gaps = 32/133 (24%) Query: 60 RGQLSPTQLWPPPPPAS--SGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDE 117 RG P Q PPPPPA S PPA+ P PPP V ++F PG + Sbjct: 827 RGIPPPPQTAPPPPPAPYYFDSGPPPAF----SPPPPPGRAYDTVRSSFKPGL-----EA 877 Query: 118 PEGAGRGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLR--------CPPP 169 GAG G++ A P P +R R + +L+ P P Sbjct: 878 RLGAGAAGLYEPGA-------------ALGPLPYPERQKRARSMIILQDSAPESGDAPRP 924 Query: 170 PSAAATTALGSRR 182 P AA RR Sbjct: 925 PPAATPPERPKRR 937 >gi|149158690 HLA-B associated transcript-2 [Homo sapiens] Length = 2157 Score = 36.6 bits (83), Expect = 0.014 Identities = 40/141 (28%), Positives = 57/141 (40%), Gaps = 12/141 (8%) Query: 64 SPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEGAGR 123 SP P P A + +S PP G P+P P L P G W PGD P+ G Sbjct: 380 SPNSEPPTPKTAWAETSRPPE-TEPGPPAPKPP---LPPPHRGPAGNWGPPGDYPDRGGP 435 Query: 124 GGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSAAATTAL----- 178 +P + + ++++ A +RRR + R AA L Sbjct: 436 PCKPPAPEDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQEERRAACAEKLKRLDE 495 Query: 179 --GSRRRCLRAEPAA-AAAPN 196 G+ + L+AEPAA AAP+ Sbjct: 496 KFGAPDKRLKAEPAAPPAAPS 516 Score = 28.5 bits (62), Expect = 3.8 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 10/50 (20%) Query: 70 PPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPE 119 P PPA+ + PP V P+PP PP TP EPE Sbjct: 508 PAAPPAAPSTPAPPPAVPKELPAPPAP----------PPASAPTPETEPE 547 >gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens] Length = 796 Score = 36.6 bits (83), Expect = 0.014 Identities = 33/103 (32%), Positives = 42/103 (40%), Gaps = 10/103 (9%) Query: 70 PPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEGAGRGGVHAS 129 PPPPP S+ A + P P A L++V T G +P D VH++ Sbjct: 598 PPPPPLGPHSNRTTPPESAPQNGPSPMAALMSVADTL--GTAHSPKD------GSSVHST 649 Query: 130 PAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSA 172 A + + V A V RL R L L PPPPSA Sbjct: 650 TASARRNSSSPV--SPASVPGQRRLASRNGDLNLQVAPPPPSA 690 Score = 28.9 bits (63), Expect = 2.9 Identities = 12/25 (48%), Positives = 13/25 (52%) Query: 70 PPPPPASSGSSHPPAWVRAGRPSPP 94 PPPPP + GS PP G P P Sbjct: 272 PPPPPHALGSRGPPTPAPPGAPGGP 296 Score = 27.7 bits (60), Expect = 6.5 Identities = 13/28 (46%), Positives = 15/28 (53%) Query: 167 PPPPSAAATTALGSRRRCLRAEPAAAAA 194 PPPP T AL ++ A AAAAA Sbjct: 72 PPPPVGVKTVALSAKEAAAAAAAAAAAA 99 >gi|239743839 PREDICTED: hypothetical protein XP_002342967 [Homo sapiens] Length = 761 Score = 35.8 bits (81), Expect = 0.024 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 3/45 (6%) Query: 60 RGQLSPTQLWPPPPP---ASSGSSHPPAWVRAGRPSPPPSALLLA 101 RG L T +PPPPP ++ S PP W+ A R PP+A A Sbjct: 207 RGFLPLTAFYPPPPPRLFVAAAFSPPPPWLSARRGFLPPAAAAAA 251 Score = 30.8 bits (68), Expect = 0.77 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 6/53 (11%) Query: 40 PVPKLLGGSKCAFYL---LC-HLHRGQLSPTQLWPPPPPASSGSSHPPAWVRA 88 P P+L + F L C H RG L T +PPPPP + PP W+ A Sbjct: 454 PPPRLFHPRRRGFLLDPAFCPHRRRGFLPATAFYPPPPPRL--FAPPPPWLFA 504 Score = 30.0 bits (66), Expect = 1.3 Identities = 51/196 (26%), Positives = 63/196 (32%), Gaps = 66/196 (33%) Query: 26 LESAASSYA-----FFCEGPVPKLLGGSKCAFYLLCHLHRGQLSPTQLWPPPP------- 73 L SAA++++ F G +P C LL RG L PT PPPP Sbjct: 122 LFSAAAAFSPPPRLFPHRGFLPPPAASGLCPPRLLIPYRRGFLPPT---PPPPQRLFARP 178 Query: 74 -----PASSGSSHPPA-WVRAG---------------RPSPPPSALLLAVFTTFPPGQW- 111 PA++ + PP + R G P PPP + A F+ PP W Sbjct: 179 GFLPTPAAATAFCPPRLFARPGFLPPHRRGFLPLTAFYPPPPPRLFVAAAFS--PPPPWL 236 Query: 112 --RTPGDEPEGAGRGGVHASP---------------AFFLQRTLYMVVRGRAKVAPAPRL 154 R P A SP A F L+ R P PRL Sbjct: 237 SARRGFLPPAAAAAAAAFCSPTAAAFSPPPPWLFVAATFCSTRLFAPPPPRLFAPPPPRL 296 Query: 155 LQRRRRLQLLRCPPPP 170 PPPP Sbjct: 297 F----------APPPP 302 Score = 27.3 bits (59), Expect = 8.5 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 16/53 (30%) Query: 34 AFFCEGPVPKLLGGSKCAFYLLCHLHRGQLSPTQLWPPPPPASSGSSHPPAWV 86 A FC P+L +C F+ PT L+ PPPP + PP W+ Sbjct: 565 AAFC---APRLFAPCRCGFF-----------PTALFVPPPPRL--FAPPPPWL 601 >gi|42544123 splicing factor 1 isoform 3 [Homo sapiens] Length = 548 Score = 35.8 bits (81), Expect = 0.024 Identities = 45/163 (27%), Positives = 63/163 (38%), Gaps = 34/163 (20%) Query: 40 PVPKLLGGSKCAFYLLCHLHRGQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALL 99 P+P L GG + + H G P PPPP + HPP G PPP Sbjct: 400 PLPSLTGGH--GGHPMQHNPNGP--PPPWMQPPPPPMNQGPHPP-----GHHGPPPMDQY 450 Query: 100 LAVFTTFPPGQWRTPGDEPEGAGRGGVHASPAFFLQRTLYMV------VRGRAKVAPAPR 153 L G P G+G +H + M+ G+ P+ Sbjct: 451 L--------------GSTPVGSGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGP 496 Query: 154 LLQRRRRLQLLRCPPPPSA--AATTALGSRRRCLRAEPAAAAA 194 L +++ Q PPPPS+ A++T L ++R L PAAA A Sbjct: 497 LPPWQQQQQQPPPPPPPSSSMASSTPLPWQQRSL---PAAAMA 536 >gi|18959210 WIRE protein [Homo sapiens] Length = 440 Score = 35.8 bits (81), Expect = 0.024 Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 10/76 (13%) Query: 58 LHRGQLSPTQLWPPPPPASSG----SSHPPAWVR------AGRPSPPPSALLLAVFTTFP 107 LHR P + PPPP S+ S+ PP R A P PPP A P Sbjct: 283 LHRKTPGPVRGLAPPPPTSASPSLLSNRPPPPARDPPSRGAAPPPPPPVIRNGARDAPPP 342 Query: 108 PGQWRTPGDEPEGAGR 123 P +R G EP G+ Sbjct: 343 PPPYRMHGSEPPSRGK 358 Score = 32.3 bits (72), Expect = 0.26 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%) Query: 70 PPPPPASSGSSHPPAWVRAGRPSPPPS 96 PPPPP S PP+ G+P PPPS Sbjct: 341 PPPPPYRMHGSEPPS---RGKPPPPPS 364 Score = 29.6 bits (65), Expect = 1.7 Identities = 41/144 (28%), Positives = 52/144 (36%), Gaps = 41/144 (28%) Query: 58 LHRGQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDE 117 LH G+ P P PPP S P +R G PS LA PP +R P Sbjct: 217 LHPGREGP----PAPPPVKPPPS--PVNIRTG-----PSGQSLAP----PPPPYRQPPGV 261 Query: 118 PEGAGRGGVHASPAF-----FLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSA 172 P G ++P L R VRG A PPPP++ Sbjct: 262 PNGPSSPTNESAPELPQRHNSLHRKTPGPVRGLA--------------------PPPPTS 301 Query: 173 AATTALGSR-RRCLRAEPAAAAAP 195 A+ + L +R R P+ AAP Sbjct: 302 ASPSLLSNRPPPPARDPPSRGAAP 325 Score = 27.7 bits (60), Expect = 6.5 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 7/35 (20%) Query: 61 GQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPP 95 G P++ PPPPP+ + + PP P PPP Sbjct: 350 GSEPPSRGKPPPPPSRTPAGPPP-------PPPPP 377 >gi|130502140 NEZHA isoform 2 [Homo sapiens] Length = 1249 Score = 35.4 bits (80), Expect = 0.031 Identities = 38/129 (29%), Positives = 48/129 (37%), Gaps = 12/129 (9%) Query: 73 PPASSGSSHPPA-WVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEGAGRGGVHASPA 131 PP + GS+ PPA WV G + P +A P R+PG P + R H PA Sbjct: 730 PPEAPGSAPPPAAWVIPGPTTGPKAASPSPARRV--PATRRSPGPGPSQSPRSPKHTRPA 787 Query: 132 FFLQRTLYMVVRGRAKVAPAPRL---------LQRRRRLQLLRCPPPPSAAATTALGSRR 182 L V+ V P L +Q R + L PP AA L Sbjct: 788 ELRLAPLTRVLTPPHDVDSLPHLRKFSPSQVPVQTRSSILLAEETPPEEPAARPGLIEIP 847 Query: 183 RCLRAEPAA 191 A+PAA Sbjct: 848 LGSLADPAA 856 >gi|122937255 NEZHA isoform 1 [Homo sapiens] Length = 1276 Score = 35.4 bits (80), Expect = 0.031 Identities = 38/129 (29%), Positives = 48/129 (37%), Gaps = 12/129 (9%) Query: 73 PPASSGSSHPPA-WVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEGAGRGGVHASPA 131 PP + GS+ PPA WV G + P +A P R+PG P + R H PA Sbjct: 757 PPEAPGSAPPPAAWVIPGPTTGPKAASPSPARRV--PATRRSPGPGPSQSPRSPKHTRPA 814 Query: 132 FFLQRTLYMVVRGRAKVAPAPRL---------LQRRRRLQLLRCPPPPSAAATTALGSRR 182 L V+ V P L +Q R + L PP AA L Sbjct: 815 ELRLAPLTRVLTPPHDVDSLPHLRKFSPSQVPVQTRSSILLAEETPPEEPAARPGLIEIP 874 Query: 183 RCLRAEPAA 191 A+PAA Sbjct: 875 LGSLADPAA 883 >gi|10863899 numb homolog (Drosophila)-like [Homo sapiens] Length = 609 Score = 35.4 bits (80), Expect = 0.031 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 13/47 (27%) Query: 70 PPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGD 116 P PPPA++G+S AW G PS PP+A F PG RTP + Sbjct: 379 PGPPPATTGTS---AW---GEPSVPPAA-------AFQPGHKRTPSE 412 >gi|45387951 transmembrane protein 108 [Homo sapiens] Length = 575 Score = 35.4 bits (80), Expect = 0.031 Identities = 33/127 (25%), Positives = 46/127 (36%), Gaps = 6/127 (4%) Query: 60 RGQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPE 119 RGQ +PT L PP A+S + P RP PP + + P G Sbjct: 134 RGQAAPTILLTKPPGATSRPTTAPPRTTTRRPPRPPGSSRKGAGNSSRPVPPAPGGHSRS 193 Query: 120 GAGRGGVHASPAFFLQR----TLYMVVRGR--AKVAPAPRLLQRRRRLQLLRCPPPPSAA 173 G+ G + S Q+ ++ + +G V P P L R L P P Sbjct: 194 KEGQRGRNPSSTPLGQKRPLGKIFQIYKGNFTGSVEPEPSTLTPRTPLWGYSSSPQPQTV 253 Query: 174 ATTALGS 180 A T + S Sbjct: 254 AATTVPS 260 >gi|210147493 transmembrane protein 108 [Homo sapiens] Length = 575 Score = 35.4 bits (80), Expect = 0.031 Identities = 33/127 (25%), Positives = 46/127 (36%), Gaps = 6/127 (4%) Query: 60 RGQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPE 119 RGQ +PT L PP A+S + P RP PP + + P G Sbjct: 134 RGQAAPTILLTKPPGATSRPTTAPPRTTTRRPPRPPGSSRKGAGNSSRPVPPAPGGHSRS 193 Query: 120 GAGRGGVHASPAFFLQR----TLYMVVRGR--AKVAPAPRLLQRRRRLQLLRCPPPPSAA 173 G+ G + S Q+ ++ + +G V P P L R L P P Sbjct: 194 KEGQRGRNPSSTPLGQKRPLGKIFQIYKGNFTGSVEPEPSTLTPRTPLWGYSSSPQPQTV 253 Query: 174 ATTALGS 180 A T + S Sbjct: 254 AATTVPS 260 >gi|171543895 ataxin 2 [Homo sapiens] Length = 1313 Score = 35.0 bits (79), Expect = 0.041 Identities = 33/116 (28%), Positives = 43/116 (37%), Gaps = 16/116 (13%) Query: 70 PPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEGAGRGGVHAS 129 P P P S SS PP+ ++G S PP A + PP + P P H S Sbjct: 551 PWPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPSHP------SAHGS 604 Query: 130 PAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLR----------CPPPPSAAAT 175 PA M G +++P + R R+ R PPS AAT Sbjct: 605 PAPVSTMPKRMSSEGPPRMSPKAQRHPRNHRVSAGRGSISSGLEFVSHNPPSEAAT 660 >gi|228008410 BEN domain containing 4 isoform b [Homo sapiens] Length = 441 Score = 35.0 bits (79), Expect = 0.041 Identities = 46/166 (27%), Positives = 60/166 (36%), Gaps = 39/166 (23%) Query: 38 EGP-VPKLLGGSKCAFYLLCHLHRGQLSPTQLWPPPPPASSGSSHPPAWV-----RAGRP 91 EGP VPK+ + R S + +P PA + P V RA P Sbjct: 10 EGPSVPKI------------YKQRSPYSVLKTFPSKRPALAKRYERPTLVELPHVRAPPP 57 Query: 92 SPPPSALLLAVFTTF---PPGQWRTPGDEPEGAGRGGVHASPAFFLQRTLYMVVRGRAKV 148 PPP A AV + PP Q++ P G GR AS + Sbjct: 58 PPPPFAPHAAVSISSSEPPPQQFQAQSSYPPGPGRAAAAASSS-------------SPSC 104 Query: 149 APAPRLLQRRRRLQLLRCPPPPSAAATTALGSRRRCLRAEPAAAAA 194 PA R Q PPP++ A ++ S +R P AAAA Sbjct: 105 TPATSQGHLRTPAQ-----PPPASPAASSSSSFAAVVRYGPGAAAA 145 >gi|148762950 BEN domain containing 4 isoform a [Homo sapiens] Length = 534 Score = 35.0 bits (79), Expect = 0.041 Identities = 46/166 (27%), Positives = 60/166 (36%), Gaps = 39/166 (23%) Query: 38 EGP-VPKLLGGSKCAFYLLCHLHRGQLSPTQLWPPPPPASSGSSHPPAWV-----RAGRP 91 EGP VPK+ + R S + +P PA + P V RA P Sbjct: 10 EGPSVPKI------------YKQRSPYSVLKTFPSKRPALAKRYERPTLVELPHVRAPPP 57 Query: 92 SPPPSALLLAVFTTF---PPGQWRTPGDEPEGAGRGGVHASPAFFLQRTLYMVVRGRAKV 148 PPP A AV + PP Q++ P G GR AS + Sbjct: 58 PPPPFAPHAAVSISSSEPPPQQFQAQSSYPPGPGRAAAAASSS-------------SPSC 104 Query: 149 APAPRLLQRRRRLQLLRCPPPPSAAATTALGSRRRCLRAEPAAAAA 194 PA R Q PPP++ A ++ S +R P AAAA Sbjct: 105 TPATSQGHLRTPAQ-----PPPASPAASSSSSFAAVVRYGPGAAAA 145 >gi|146219843 Snf2-related CBP activator protein [Homo sapiens] Length = 3230 Score = 34.7 bits (78), Expect = 0.053 Identities = 48/177 (27%), Positives = 66/177 (37%), Gaps = 31/177 (17%) Query: 40 PVPKLLGGSKCAFYLLCHLHRGQLSPTQLWPPPPPASSGSSHP-------PAWVR-AGRP 91 PVPK G + ++ + R L P + PPP P S P PA + + P Sbjct: 1000 PVPKQEGRT----VVVVNNPRAPLGPVPVRPPPGPELSAQPTPGPVPQVLPASLMVSASP 1055 Query: 92 SPPPSALLLAVFTTFPPGQWRTPGDEPEGAGRGGVHASPAFFLQRT---------LYMVV 142 + PP + + PPG P +P V SP L T L Sbjct: 1056 AGPP-----LIPASRPPGPVLLPPLQPNSGSLPQVLPSPLGVLSGTSRPPTPTLSLKPTP 1110 Query: 143 RGRAKVAPAPRLLQRRRRLQLLRCPP----PPSAAATTALGSRRRCLRAEPAAAAAP 195 +++PAP L+ L PP PP+AA TT+ + A PA AP Sbjct: 1111 PAPVRLSPAPPP-GSSSLLKPLTVPPGYTFPPAAATTTSTTTATATTTAVPAPTPAP 1166 >gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo sapiens] Length = 355 Score = 34.3 bits (77), Expect = 0.070 Identities = 37/119 (31%), Positives = 44/119 (36%), Gaps = 14/119 (11%) Query: 64 SPTQLWPPPPPASSGSSHPPAWVRAGRPSPP-PSALLLAVFTTFPPGQWRTPGDEPEGAG 122 SP W P P G H P + A P P P+ +T+ P G T AG Sbjct: 76 SPAHPWTTPQP---GPPHQPGFNPASSPRLPLPADSEPDAYTSAPRGSGPT-----YCAG 127 Query: 123 RGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSAAATTALGSR 181 G A T Y ++V P PRL +RR P P S AA LG R Sbjct: 128 AGNSRAGGGL----TKYNSAHSSSRV-PRPRLPSQRRGASCGLGPGPESRAARQGLGGR 181 >gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo sapiens] Length = 355 Score = 34.3 bits (77), Expect = 0.070 Identities = 37/119 (31%), Positives = 44/119 (36%), Gaps = 14/119 (11%) Query: 64 SPTQLWPPPPPASSGSSHPPAWVRAGRPSPP-PSALLLAVFTTFPPGQWRTPGDEPEGAG 122 SP W P P G H P + A P P P+ +T+ P G T AG Sbjct: 76 SPAHPWTTPQP---GPPHQPGFNPASSPRLPLPADSEPDAYTSAPRGSGPT-----YCAG 127 Query: 123 RGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSAAATTALGSR 181 G A T Y ++V P PRL +RR P P S AA LG R Sbjct: 128 AGNSRAGGGL----TKYNSAHSSSRV-PRPRLPSQRRGASCGLGPGPESRAARQGLGGR 181 >gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo sapiens] Length = 355 Score = 34.3 bits (77), Expect = 0.070 Identities = 37/119 (31%), Positives = 44/119 (36%), Gaps = 14/119 (11%) Query: 64 SPTQLWPPPPPASSGSSHPPAWVRAGRPSPP-PSALLLAVFTTFPPGQWRTPGDEPEGAG 122 SP W P P G H P + A P P P+ +T+ P G T AG Sbjct: 76 SPAHPWTTPQP---GPPHQPGFNPASSPRLPLPADSEPDAYTSAPRGSGPT-----YCAG 127 Query: 123 RGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSAAATTALGSR 181 G A T Y ++V P PRL +RR P P S AA LG R Sbjct: 128 AGNSRAGGGL----TKYNSAHSSSRV-PRPRLPSQRRGASCGLGPGPESRAARQGLGGR 181 >gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] Length = 638 Score = 34.3 bits (77), Expect = 0.070 Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 12/77 (15%) Query: 58 LHRGQ----LSPTQLWPPPPPASSGSSHP------PAWVRAGR--PSPPPSALLLAVFTT 105 LH+G+ P + PPPPP SG P P W + + P PPP + +A T Sbjct: 463 LHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTP 522 Query: 106 FPPGQWRTPGDEPEGAG 122 P Q T G G Sbjct: 523 LPWQQNTTTTTTSAGTG 539 Score = 31.2 bits (69), Expect = 0.59 Identities = 35/144 (24%), Positives = 52/144 (36%), Gaps = 29/144 (20%) Query: 40 PVPKLLGGSKCAFYLLCHLHRGQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALL 99 P+P L GG + + H G P PPPP + HPP G PPP Sbjct: 400 PLPSLTGGH--GGHPMQHNPNGP--PPPWMQPPPPPMNQGPHPP-----GHHGPPPMDQY 450 Query: 100 LAVFTTFPPGQWRTPGDEPEGAGRGGVHASPAFFLQRTLYMV------VRGRAKVAPAPR 153 L G P G+G +H + M+ G+ P+ Sbjct: 451 L--------------GSTPVGSGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGP 496 Query: 154 LLQRRRRLQLLRCPPPPSAAATTA 177 L +++ Q PPPPS++ ++ Sbjct: 497 LPPWQQQQQQPPPPPPPSSSMASS 520 >gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] Length = 639 Score = 34.3 bits (77), Expect = 0.070 Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 12/77 (15%) Query: 58 LHRGQ----LSPTQLWPPPPPASSGSSHP------PAWVRAGR--PSPPPSALLLAVFTT 105 LH+G+ P + PPPPP SG P P W + + P PPP + +A T Sbjct: 463 LHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTP 522 Query: 106 FPPGQWRTPGDEPEGAG 122 P Q T G G Sbjct: 523 LPWQQNTTTTTTSAGTG 539 Score = 31.2 bits (69), Expect = 0.59 Identities = 35/144 (24%), Positives = 52/144 (36%), Gaps = 29/144 (20%) Query: 40 PVPKLLGGSKCAFYLLCHLHRGQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALL 99 P+P L GG + + H G P PPPP + HPP G PPP Sbjct: 400 PLPSLTGGH--GGHPMQHNPNGP--PPPWMQPPPPPMNQGPHPP-----GHHGPPPMDQY 450 Query: 100 LAVFTTFPPGQWRTPGDEPEGAGRGGVHASPAFFLQRTLYMV------VRGRAKVAPAPR 153 L G P G+G +H + M+ G+ P+ Sbjct: 451 L--------------GSTPVGSGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGP 496 Query: 154 LLQRRRRLQLLRCPPPPSAAATTA 177 L +++ Q PPPPS++ ++ Sbjct: 497 LPPWQQQQQQPPPPPPPSSSMASS 520 Score = 28.9 bits (63), Expect = 2.9 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 7/36 (19%) Query: 70 PPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTT 105 PPPPP S+G + P P PPP + + F T Sbjct: 586 PPPPPGSAGMMYAP-------PPPPPPPMDPSNFVT 614 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.322 0.136 0.459 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,637,229 Number of Sequences: 37866 Number of extensions: 787883 Number of successful extensions: 7079 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 105 Number of HSP's successfully gapped in prelim test: 409 Number of HSP's that attempted gapping in prelim test: 5435 Number of HSP's gapped (non-prelim): 1628 length of query: 196 length of database: 18,247,518 effective HSP length: 97 effective length of query: 99 effective length of database: 14,574,516 effective search space: 1442877084 effective search space used: 1442877084 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.