Guide to the Human Genome
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Name: LOC100289603 Sequence: fasta or formatted (196aa) NCBI GI: 239744848
Description:

PREDICTED: hypothetical protein XP_002344119

Not currently referenced in the text

Other entries for this name:
alt mRNA {196aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.8         25           5
 C cysteine            3.1          6           1
 D aspartate           0.5          1           1
 E glutamate           3.1          6           1
 F phenylalanine       4.6          9           2
 G glycine             7.7         15           2
 H histidine           4.1          8           1
 I isoleucine          0.0          0           0
 K lysine              2.0          4           1
 L leucine            11.2         22           3
 M methionine          1.5          3           1
 N asparagine          1.5          3           2
 P proline            14.3         28           5
 Q glutamine           4.1          8           2
 R arginine           10.7         21           4
 S serine              7.1         14           2
 T threonine           4.6          9           2
 V valine              3.6          7           2
 W tryptophan          2.0          4           1
 Y tyrosine            1.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344119 
LOC100291709          1.000   PREDICTED: hypothetical protein XP_002344788 
LOC100289603          1.000   PREDICTED: hypothetical protein 
TAF4                  0.043   TBP-associated factor 4 
LOC100289242          0.033   PREDICTED: hypothetical protein XP_002342243 
DAZAP1                0.031   DAZ associated protein 1 isoform a 
DAZAP1                0.031   DAZ associated protein 1 isoform b 
C16orf5               0.031   cell death inducing protein 
WASL                  0.031   Wiskott-Aldrich syndrome gene-like protein 
COL15A1               0.031   alpha 1 type XV collagen precursor 
SHANK3                0.031   SH3 and multiple ankyrin repeat domains 3 
BAT2                  0.031   HLA-B associated transcript-2 
C14orf4               0.031   chromosome 14 open reading frame 4 
LOC100288993          0.028   PREDICTED: hypothetical protein XP_002342967 
SF1                   0.028   splicing factor 1 isoform 3 
WIPF2                 0.028   WIRE protein 
KIAA1543              0.025   NEZHA isoform 2 
KIAA1543              0.025   NEZHA isoform 1 
NUMBL                 0.025   numb homolog (Drosophila)-like 
TMEM108               0.025   transmembrane protein 108 
TMEM108               0.025   transmembrane protein 108 
ATXN2                 0.025   ataxin 2 
BEND4                 0.025   BEN domain containing 4 isoform b 
BEND4                 0.025   BEN domain containing 4 isoform a 
SRCAP                 0.025   Snf2-related CBP activator protein 
LOC100291624          0.023   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.023   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.023   PREDICTED: hypothetical protein XP_002342583 
SF1                   0.023   splicing factor 1 isoform 2 
SF1                   0.023   splicing factor 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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