Guide to the Human Genome
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Name: C16orf5 Sequence: fasta or formatted (208aa) NCBI GI: 118344450
Description:

cell death inducing protein

Referenced in:

Lysosomes and Related Organelles

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         11           2
 C cysteine            5.3         11           2
 D aspartate           2.4          5           1
 E glutamate           3.4          7           2
 F phenylalanine       3.8          8           2
 G glycine            11.5         24           2
 H histidine           2.9          6           1
 I isoleucine          4.3          9           1
 K lysine              2.4          5           1
 L leucine             5.3         11           2
 M methionine          4.3          9           1
 N asparagine          1.0          2           1
 P proline            22.6         47           4
 Q glutamine           2.9          6           2
 R arginine            1.0          2           1
 S serine              4.3          9           2
 T threonine           7.2         15           2
 V valine              4.3          9           1
 W tryptophan          0.0          0           0
 Y tyrosine            5.8         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cell death inducing protein 
LITAF                 0.151   lipopolysaccharide-induced TNF-alpha factor isoform...
LITAF                 0.151   lipopolysaccharide-induced TNF-alpha factor isoform ...
CPSF6                 0.112   cleavage and polyadenylation specific factor 6, 68 ...
SF3A2                 0.108   splicing factor 3a, subunit 2 
WASL                  0.106   Wiskott-Aldrich syndrome gene-like protein 
WBP11                 0.106   WW domain binding protein 11 
FMN2                  0.094   formin 2 
EMID1                 0.094   EMI domain containing 1 
COL17A1               0.092   alpha 1 type XVII collagen 
GRINA                 0.090   glutamate receptor, ionotropic, N-methyl D-aspartate...
GRINA                 0.090   glutamate receptor, ionotropic, N-methyl D-aspartate...
SF3B4                 0.090   splicing factor 3b, subunit 4 
WASF2                 0.090   WAS protein family, member 2 
SFRS15                0.085   splicing factor, arginine/serine-rich 15 isoform 2 ...
SFRS15                0.085   splicing factor, arginine/serine-rich 15 isoform 1 [...
WASF1                 0.083   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.083   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.083   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.083   Wiskott-Aldrich syndrome protein family member 1 [Hom...
SFRS15                0.083   splicing factor, arginine/serine-rich 15 isoform 3 ...
CCNK                  0.081   cyclin K isoform 1 
C6orf132              0.081   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.081   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.081   PREDICTED: hypothetical protein LOC647024 
SFPQ                  0.081   splicing factor proline/glutamine rich (polypyrimidin...
TCERG1                0.081   transcription elongation regulator 1 isoform 2 [Homo...
TCERG1                0.081   transcription elongation regulator 1 isoform 1 [Homo...
PRB3                  0.081   proline-rich protein BstNI subfamily 3 precursor [H...
SAMD1                 0.079   sterile alpha motif domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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