Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239750031
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750031 PREDICTED: hypothetical protein [Homo sapiens]
(356 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750031 PREDICTED: hypothetical protein [Homo sapiens] 730 0.0
gi|239744342 PREDICTED: hypothetical protein XP_002343123 [Homo ... 730 0.0
gi|239755499 PREDICTED: hypothetical protein [Homo sapiens] 685 0.0
gi|47078281 hypothetical protein LOC9679 [Homo sapiens] 35 0.079
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens] 34 0.18
gi|153251865 hypothetical protein LOC84226 [Homo sapiens] 33 0.30
gi|38569493 potassium voltage-gated channel, subfamily H (eag-re... 33 0.39
gi|60097902 filaggrin [Homo sapiens] 33 0.51
gi|116517332 STG protein [Homo sapiens] 33 0.51
gi|156938343 talin 2 [Homo sapiens] 32 0.67
gi|116812620 hypothetical protein LOC147965 [Homo sapiens] 31 1.5
gi|239752661 PREDICTED: hypothetical protein [Homo sapiens] 31 1.9
gi|239741005 PREDICTED: hypothetical protein XP_002342062 [Homo ... 31 1.9
gi|226437571 abhydrolase domain containing 14A [Homo sapiens] 31 1.9
gi|115387099 brain-specific angiogenesis inhibitor 2 [Homo sapiens] 31 1.9
gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo sapi... 30 3.3
gi|169165075 PREDICTED: hypothetical protein [Homo sapiens] 30 4.3
gi|91208420 bassoon protein [Homo sapiens] 30 4.3
gi|32698704 tectonin beta-propeller repeat containing 1 [Homo sa... 30 4.3
gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II, pol... 29 5.6
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol... 29 5.6
gi|188536004 zinc finger protein 469 [Homo sapiens] 29 5.6
gi|154146223 splicing factor, arginine/serine-rich 130 [Homo sap... 29 5.6
gi|154146193 splicing factor, arginine/serine-rich 130 [Homo sap... 29 5.6
gi|149999371 hypothetical protein LOC91056 [Homo sapiens] 29 5.6
gi|126352608 elastin isoform e precursor [Homo sapiens] 29 7.4
gi|126352322 elastin isoform c precursor [Homo sapiens] 29 7.4
gi|126352700 elastin isoform b precursor [Homo sapiens] 29 7.4
gi|148833508 notch1 preproprotein [Homo sapiens] 29 7.4
gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo ... 29 7.4
>gi|239750031 PREDICTED: hypothetical protein [Homo sapiens]
Length = 356
Score = 730 bits (1884), Expect = 0.0
Identities = 356/356 (100%), Positives = 356/356 (100%)
Query: 1 MAVQAAGLSSQRSLPLFLQEVTQIKAHLDLGIEAAQAAAHAALEHGVIIVVGIAQGLLEA 60
MAVQAAGLSSQRSLPLFLQEVTQIKAHLDLGIEAAQAAAHAALEHGVIIVVGIAQGLLEA
Sbjct: 1 MAVQAAGLSSQRSLPLFLQEVTQIKAHLDLGIEAAQAAAHAALEHGVIIVVGIAQGLLEA 60
Query: 61 LQGLLEDAEAQEGIAHAQADLASELGTCPGTRQPKAGLAVGDGLVKLAQLLVAACQVQVA 120
LQGLLEDAEAQEGIAHAQADLASELGTCPGTRQPKAGLAVGDGLVKLAQLLVAACQVQVA
Sbjct: 61 LQGLLEDAEAQEGIAHAQADLASELGTCPGTRQPKAGLAVGDGLVKLAQLLVAACQVQVA 120
Query: 121 LQEEVGILQLPGRVDLDHSELHTATHLLVAAHLRVGCDQAAQHAEAPHEVRALLQHLCPH 180
LQEEVGILQLPGRVDLDHSELHTATHLLVAAHLRVGCDQAAQHAEAPHEVRALLQHLCPH
Sbjct: 121 LQEEVGILQLPGRVDLDHSELHTATHLLVAAHLRVGCDQAAQHAEAPHEVRALLQHLCPH 180
Query: 181 LQCLLCLVGLVQLEPLLDLLLGLVLPHPPQALCPTWGDPWWLRASRHSWGRNHSASCPPK 240
LQCLLCLVGLVQLEPLLDLLLGLVLPHPPQALCPTWGDPWWLRASRHSWGRNHSASCPPK
Sbjct: 181 LQCLLCLVGLVQLEPLLDLLLGLVLPHPPQALCPTWGDPWWLRASRHSWGRNHSASCPPK 240
Query: 241 RGNKSSVGWEPEWGLDGEQAPPWEQSWFSPSAAVAASWGHMASEECQQQGHHGPSQQPCQ 300
RGNKSSVGWEPEWGLDGEQAPPWEQSWFSPSAAVAASWGHMASEECQQQGHHGPSQQPCQ
Sbjct: 241 RGNKSSVGWEPEWGLDGEQAPPWEQSWFSPSAAVAASWGHMASEECQQQGHHGPSQQPCQ 300
Query: 301 GASSSKWAGLGLEVLGGRRARLDLQVRGSQVSAQPCFFPIKTPLTAASPGSVPEIH 356
GASSSKWAGLGLEVLGGRRARLDLQVRGSQVSAQPCFFPIKTPLTAASPGSVPEIH
Sbjct: 301 GASSSKWAGLGLEVLGGRRARLDLQVRGSQVSAQPCFFPIKTPLTAASPGSVPEIH 356
>gi|239744342 PREDICTED: hypothetical protein XP_002343123 [Homo
sapiens]
Length = 356
Score = 730 bits (1884), Expect = 0.0
Identities = 356/356 (100%), Positives = 356/356 (100%)
Query: 1 MAVQAAGLSSQRSLPLFLQEVTQIKAHLDLGIEAAQAAAHAALEHGVIIVVGIAQGLLEA 60
MAVQAAGLSSQRSLPLFLQEVTQIKAHLDLGIEAAQAAAHAALEHGVIIVVGIAQGLLEA
Sbjct: 1 MAVQAAGLSSQRSLPLFLQEVTQIKAHLDLGIEAAQAAAHAALEHGVIIVVGIAQGLLEA 60
Query: 61 LQGLLEDAEAQEGIAHAQADLASELGTCPGTRQPKAGLAVGDGLVKLAQLLVAACQVQVA 120
LQGLLEDAEAQEGIAHAQADLASELGTCPGTRQPKAGLAVGDGLVKLAQLLVAACQVQVA
Sbjct: 61 LQGLLEDAEAQEGIAHAQADLASELGTCPGTRQPKAGLAVGDGLVKLAQLLVAACQVQVA 120
Query: 121 LQEEVGILQLPGRVDLDHSELHTATHLLVAAHLRVGCDQAAQHAEAPHEVRALLQHLCPH 180
LQEEVGILQLPGRVDLDHSELHTATHLLVAAHLRVGCDQAAQHAEAPHEVRALLQHLCPH
Sbjct: 121 LQEEVGILQLPGRVDLDHSELHTATHLLVAAHLRVGCDQAAQHAEAPHEVRALLQHLCPH 180
Query: 181 LQCLLCLVGLVQLEPLLDLLLGLVLPHPPQALCPTWGDPWWLRASRHSWGRNHSASCPPK 240
LQCLLCLVGLVQLEPLLDLLLGLVLPHPPQALCPTWGDPWWLRASRHSWGRNHSASCPPK
Sbjct: 181 LQCLLCLVGLVQLEPLLDLLLGLVLPHPPQALCPTWGDPWWLRASRHSWGRNHSASCPPK 240
Query: 241 RGNKSSVGWEPEWGLDGEQAPPWEQSWFSPSAAVAASWGHMASEECQQQGHHGPSQQPCQ 300
RGNKSSVGWEPEWGLDGEQAPPWEQSWFSPSAAVAASWGHMASEECQQQGHHGPSQQPCQ
Sbjct: 241 RGNKSSVGWEPEWGLDGEQAPPWEQSWFSPSAAVAASWGHMASEECQQQGHHGPSQQPCQ 300
Query: 301 GASSSKWAGLGLEVLGGRRARLDLQVRGSQVSAQPCFFPIKTPLTAASPGSVPEIH 356
GASSSKWAGLGLEVLGGRRARLDLQVRGSQVSAQPCFFPIKTPLTAASPGSVPEIH
Sbjct: 301 GASSSKWAGLGLEVLGGRRARLDLQVRGSQVSAQPCFFPIKTPLTAASPGSVPEIH 356
>gi|239755499 PREDICTED: hypothetical protein [Homo sapiens]
Length = 516
Score = 685 bits (1767), Expect = 0.0
Identities = 330/331 (99%), Positives = 331/331 (100%)
Query: 26 AHLDLGIEAAQAAAHAALEHGVIIVVGIAQGLLEALQGLLEDAEAQEGIAHAQADLASEL 85
AHLDLGIEAAQAAAHAALEHGVIIVVG+AQGLLEALQGLLEDAEAQEGIAHAQADLASEL
Sbjct: 186 AHLDLGIEAAQAAAHAALEHGVIIVVGVAQGLLEALQGLLEDAEAQEGIAHAQADLASEL 245
Query: 86 GTCPGTRQPKAGLAVGDGLVKLAQLLVAACQVQVALQEEVGILQLPGRVDLDHSELHTAT 145
GTCPGTRQPKAGLAVGDGLVKLAQLLVAACQVQVALQEEVGILQLPGRVDLDHSELHTAT
Sbjct: 246 GTCPGTRQPKAGLAVGDGLVKLAQLLVAACQVQVALQEEVGILQLPGRVDLDHSELHTAT 305
Query: 146 HLLVAAHLRVGCDQAAQHAEAPHEVRALLQHLCPHLQCLLCLVGLVQLEPLLDLLLGLVL 205
HLLVAAHLRVGCDQAAQHAEAPHEVRALLQHLCPHLQCLLCLVGLVQLEPLLDLLLGLVL
Sbjct: 306 HLLVAAHLRVGCDQAAQHAEAPHEVRALLQHLCPHLQCLLCLVGLVQLEPLLDLLLGLVL 365
Query: 206 PHPPQALCPTWGDPWWLRASRHSWGRNHSASCPPKRGNKSSVGWEPEWGLDGEQAPPWEQ 265
PHPPQALCPTWGDPWWLRASRHSWGRNHSASCPPKRGNKSSVGWEPEWGLDGEQAPPWEQ
Sbjct: 366 PHPPQALCPTWGDPWWLRASRHSWGRNHSASCPPKRGNKSSVGWEPEWGLDGEQAPPWEQ 425
Query: 266 SWFSPSAAVAASWGHMASEECQQQGHHGPSQQPCQGASSSKWAGLGLEVLGGRRARLDLQ 325
SWFSPSAAVAASWGHMASEECQQQGHHGPSQQPCQGASSSKWAGLGLEVLGGRRARLDLQ
Sbjct: 426 SWFSPSAAVAASWGHMASEECQQQGHHGPSQQPCQGASSSKWAGLGLEVLGGRRARLDLQ 485
Query: 326 VRGSQVSAQPCFFPIKTPLTAASPGSVPEIH 356
VRGSQVSAQPCFFPIKTPLTAASPGSVPEIH
Sbjct: 486 VRGSQVSAQPCFFPIKTPLTAASPGSVPEIH 516
>gi|47078281 hypothetical protein LOC9679 [Homo sapiens]
Length = 422
Score = 35.4 bits (80), Expect = 0.079
Identities = 30/87 (34%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 277 SWGHMASEECQQQG-HHGPSQQPCQGASSSKWAGLG-------LEVLGGRRARLDLQVRG 328
S ++ S C Q G HH QPCQG S G L +GG RLDLQ
Sbjct: 172 SRANVLSSPCDQAGLHHRFGGQPCQGVPGSAPCGQAGDTWSPDLHPVGG--GRLDLQRSL 229
Query: 329 SQVSAQPCFFPIKTPLTAASPGSVPEI 355
S Q F P ++P S PE+
Sbjct: 230 SCSHEQFSFVEYCPPSANSTPASTPEL 256
>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 34.3 bits (77), Expect = 0.18
Identities = 36/110 (32%), Positives = 42/110 (38%), Gaps = 16/110 (14%)
Query: 215 TWGDPWWLRASRHSWGRNHSASCP-PKRGNKSSVGWE--PEWGLDGEQAPPWEQSWFSPS 271
+WGD RA S G + A P P RG+ W P G AP SP
Sbjct: 7 SWGDQAGERARAPSGGGSGQAQRPGPGRGS-----WRRPPRRQRPGPAAP-------SPP 54
Query: 272 AAVAASWGHMASEECQQQGHHGPSQQPCQGAS-SSKWAGLGLEVLGGRRA 320
A AA+WG Q G G GA + G G + GGRRA
Sbjct: 55 ARGAAAWGRSGGGPAAQSGGDGGGLPRRAGAEPGGRGGGSGGTMPGGRRA 104
>gi|153251865 hypothetical protein LOC84226 [Homo sapiens]
Length = 1984
Score = 33.5 bits (75), Expect = 0.30
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 19/80 (23%)
Query: 231 RNHSAS----CPPKRGNKSSVGWEPEWGLDGEQAPPWEQSWFSPSAAVAASWGHMASEEC 286
R+HS S C P R N SS P E+SW SPS S +
Sbjct: 1581 RHHSPSQRSHCSPSRKNHSS---------------PSERSWRSPSQRNHCSPPERSCHSL 1625
Query: 287 QQQGHHGPSQQPCQGASSSK 306
++G H PSQ+ +G S +
Sbjct: 1626 SERGLHSPSQRSHRGPSQRR 1645
>gi|38569493 potassium voltage-gated channel, subfamily H
(eag-related), member 3 [Homo sapiens]
Length = 1083
Score = 33.1 bits (74), Expect = 0.39
Identities = 35/116 (30%), Positives = 44/116 (37%), Gaps = 17/116 (14%)
Query: 141 LHTATHLLVAAHLRVGCDQAAQHAEAPHEVRALLQHLCPHLQCLLCLVGLVQLEPLLDLL 200
L A L++A H C +A+ P LLQ LC L+P +
Sbjct: 902 LRQAVQLVLAPHREGPCPRASGEGPCPASTSGLLQPLCVDTG-----ASSYCLQPPAGSV 956
Query: 201 LGLVLPHP---PQALCPTWGDPWWLRASRHS-WGR------NHSASCPPKRGNKSS 246
L PHP P L W PW AS+ S W R + S S PP G+ S
Sbjct: 957 LSGTWPHPRPGPPPLMAPW--PWGPPASQSSPWPRATAFWTSTSDSEPPASGDLCS 1010
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 32.7 bits (73), Expect = 0.51
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 225 SRHSWGRNHSASCPPKRGNKSSVGWEPEWGLDGEQAPPWEQSWFSPSAAVAASWGHMASE 284
SRHS R+H AS S VG G P ++W S + + S GH
Sbjct: 2527 SRHSGSRHHEASSRADSSGHSQVGQGQSEG------PRTSRNWGSSFSQDSDSQGHSEDS 2580
Query: 285 E----CQQQGHHGPSQQPCQGAS 303
E + HHG +Q+ + S
Sbjct: 2581 ERWSGSASRNHHGSAQEQLRDGS 2603
>gi|116517332 STG protein [Homo sapiens]
Length = 325
Score = 32.7 bits (73), Expect = 0.51
Identities = 22/75 (29%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Query: 239 PKRGNKSSVGWEPEWGLDGEQAPPWEQSWFSPSAAVAASWGHMASEE---CQQQGHHGPS 295
P G + W P WGL + P E W +AA G EE P
Sbjct: 88 PPAGGSAVQRWPPSWGLPAMDSWPPEDPWQMMAAAAEDRLGEALPEELSYLSSAAALAPG 147
Query: 296 QQPCQGASSSKWAGL 310
P G SS GL
Sbjct: 148 SGPLPGESSPDATGL 162
>gi|156938343 talin 2 [Homo sapiens]
Length = 2542
Score = 32.3 bits (72), Expect = 0.67
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 37 AAAHAALEHGVIIVVGIAQGLLEALQGLLE--DAEAQEGIAHAQADLASELGTC----PG 90
AAAHA L+ ++ G A + EA Q L+ DAE Q+ +A ++ L C PG
Sbjct: 1148 AAAHAMLDSARDVMEGSAMLIQEAKQALIAPGDAERQQRLAQVAKAVSHSLNNCVNCLPG 1207
Query: 91 TRQPKAGL-AVGDGLVKL 107
+ L ++G+ KL
Sbjct: 1208 QKDVDVALKSIGESSKKL 1225
>gi|116812620 hypothetical protein LOC147965 [Homo sapiens]
Length = 349
Score = 31.2 bits (69), Expect = 1.5
Identities = 46/144 (31%), Positives = 56/144 (38%), Gaps = 8/144 (5%)
Query: 68 AEAQEGIAHAQADLASELGTCPGTRQPKAGLAVGDGL-VKLAQLLVAACQVQVALQEEVG 126
AEA EG A AQ LA G PG A GL V+LA L ++ +
Sbjct: 6 AEAWEGAAVAQDLLALGYGGVPGAASRGASCPDFRGLCVRLAAELATLGALEQQREAGAE 65
Query: 127 ILQLPGRVDLDHSELHTATHLLVAAH----LRVGCDQAAQHAEAPHEVRALLQHLCPHLQ 182
+L + L LL H G D AA E +R LL+ LC LQ
Sbjct: 66 VLSAGDGPGAEEDFLRQLGSLLRELHCPDRALCGGDGAAALREPGAGLR-LLRFLCSELQ 124
Query: 183 C--LLCLVGLVQLEPLLDLLLGLV 204
LLCL L+ P L G+V
Sbjct: 125 ATRLLCLRSLLDPSPRPPLGEGVV 148
>gi|239752661 PREDICTED: hypothetical protein [Homo sapiens]
Length = 85
Score = 30.8 bits (68), Expect = 1.9
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 10/53 (18%)
Query: 270 PSAAVAASWGHMASEECQQQGHHGPSQQP-------CQGASS---SKWAGLGL 312
P A+ A WG S EC+ GP Q P C+G + S+W GL
Sbjct: 2 PGASAWARWGDFGSPECKLYHFEGPRQAPQPPVHRGCRGDDAEGRSRWRTWGL 54
>gi|239741005 PREDICTED: hypothetical protein XP_002342062 [Homo
sapiens]
Length = 85
Score = 30.8 bits (68), Expect = 1.9
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 10/53 (18%)
Query: 270 PSAAVAASWGHMASEECQQQGHHGPSQQP-------CQGASS---SKWAGLGL 312
P A+ A WG S EC+ GP Q P C+G + S+W GL
Sbjct: 2 PGASAWARWGDFGSPECKLYHFEGPRQAPQPPVHRGCRGDDAEGRSRWRTWGL 54
>gi|226437571 abhydrolase domain containing 14A [Homo sapiens]
Length = 271
Score = 30.8 bits (68), Expect = 1.9
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 188 VGLVQLEPLLDLLLGLVLPHPPQALCPTWGDP 219
V L+ L LL LLL + LP PP+ WGDP
Sbjct: 35 VALLGLSLLLMLLLYVGLPGPPEQTSCLWGDP 66
>gi|115387099 brain-specific angiogenesis inhibitor 2 [Homo sapiens]
Length = 1585
Score = 30.8 bits (68), Expect = 1.9
Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 15/104 (14%)
Query: 211 ALCPTWG--DPW--WLRASRHSW--GRNHSASC-PPKRGNKSSVGWEPEWGLDGEQAPPW 263
A CP G + W W SR R+ +C PP+ G K+ G E + L A P
Sbjct: 359 ATCPVHGVWEEWGSWSLCSRSCGRGSRSRMRTCVPPQHGGKACEGPELQTKLCSMAACPV 418
Query: 264 EQSW-----FSPSAAVAASWGHMASEECQQQGHHGPSQQPCQGA 302
E W + P + A+ S +C GP+ C GA
Sbjct: 419 EGQWLEWGPWGPCSTSCANGTQQRSRKCSVA---GPAWATCTGA 459
>gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo
sapiens]
Length = 410
Score = 30.0 bits (66), Expect = 3.3
Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 9/119 (7%)
Query: 204 VLPHPPQALCPTWGDPWWLRASRHSWGRNHSASCPPKRGNKSSVGWEPEWGLDGEQAPPW 263
+L PPQA P GDP N++ P G GW + G + PP
Sbjct: 53 LLRRPPQAPLPMHGDP-----QPPGLAANNTL---PALGAGGWAGWRGPREVVGREPPPV 104
Query: 264 EQSWFSPSAAVAASWGHMASEECQQQGHHGPSQQPCQGASSSKWAGLGLEVLGGRRARL 322
P ++V WG A+E S C+ + +++ LG + G R L
Sbjct: 105 PPPPPLPPSSVEDDWGGPATEPPASLLSSASSDDFCKEKTEDRYS-LGSSLDSGMRTPL 162
>gi|169165075 PREDICTED: hypothetical protein [Homo sapiens]
Length = 147
Score = 29.6 bits (65), Expect = 4.3
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 31 GIEAAQAAAHAALEHGVIIVVGIAQGLLEALQGLLEDAEAQEGIAHAQADLASELGTCPG 90
G+ +A AA +H + +G+A+G L L AQ+ AQ +A E G G
Sbjct: 21 GVNSAWLAALEVRQH-LAAGLGLAEGWQALLAALEAVRAAQQAPEEAQLGIAGEAGGGLG 79
Query: 91 TRQPKAGLAVGDGLVKLAQL--LVAACQVQ 118
R+ A +AV +GL L ++AA VQ
Sbjct: 80 LRR-GAAVAVAEGLAVAHALGPVLAAVLVQ 108
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 29.6 bits (65), Expect = 4.3
Identities = 40/131 (30%), Positives = 50/131 (38%), Gaps = 22/131 (16%)
Query: 224 ASRHSWGRNHSASCPPKRGNKSSVGWEPEWGLDGEQAPPWEQSWFSPSAAVAASWGHMAS 283
AS G + S P +K+ +P+ L G QA P Q SPS+ S
Sbjct: 3718 ASDSKKGSRQAHSGPAALQSKAEPQAQPQ--LQGRQAAPGPQQSQSPSSRQIPSGAASRQ 3775
Query: 284 EECQQQGHHGPSQQPCQGASSSKWAGLGLEVLGGRRARLDLQ----VRGSQVSA-QPCFF 338
+ QQQ G QP Q A + +ARL Q RGS +A QP
Sbjct: 3776 PQTQQQ-QQGLGLQPPQQALT--------------QARLQQQSQPTTRGSAPAASQPAGK 3820
Query: 339 PIKTPLTAASP 349
P P TA P
Sbjct: 3821 PQPGPSTATGP 3831
>gi|32698704 tectonin beta-propeller repeat containing 1 [Homo
sapiens]
Length = 1165
Score = 29.6 bits (65), Expect = 4.3
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 18/86 (20%)
Query: 202 GLVLPHPPQALCPTWGDPWWLRASRHSWGRNHSASCPPKRGNKSSVGWEPEWGLDGEQAP 261
G V P P GD W+ H S P +R + S G + LD E
Sbjct: 1013 GSVYPSQPA------GDCWY-----------HIPSPPRQRLKQVSAGQTSVYALD-ENGN 1054
Query: 262 PWEQSWFSPSAAVAASWGHMASEECQ 287
W + +PS +SW H+++ C+
Sbjct: 1055 LWYRQGITPSYPQGSSWEHVSNNVCR 1080
>gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1b
[Homo sapiens]
Length = 867
Score = 29.3 bits (64), Expect = 5.6
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 24/103 (23%)
Query: 227 HSWGRNHSASCPPKR---GNKSSVGWEPEWGLD-------GEQAP----------PWEQS 266
HS G S PP R G + G EP GL+ G +A P E+
Sbjct: 346 HSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERD 405
Query: 267 WFSPSAAVAASWGHMASEE----CQQQGHHGPSQQPCQGASSS 305
+ P+ A +S + E C Q G P Q+P QGA+ +
Sbjct: 406 IWPPAQAPTSSQELAGAPEPQGSCAQGGRVAPGQRPAQGATGT 448
>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1a
[Homo sapiens]
Length = 961
Score = 29.3 bits (64), Expect = 5.6
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 24/103 (23%)
Query: 227 HSWGRNHSASCPPKR---GNKSSVGWEPEWGLD-------GEQAP----------PWEQS 266
HS G S PP R G + G EP GL+ G +A P E+
Sbjct: 346 HSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERD 405
Query: 267 WFSPSAAVAASWGHMASEE----CQQQGHHGPSQQPCQGASSS 305
+ P+ A +S + E C Q G P Q+P QGA+ +
Sbjct: 406 IWPPAQAPTSSQELAGAPEPQGSCAQGGRVAPGQRPAQGATGT 448
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 29.3 bits (64), Expect = 5.6
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 233 HSASCPPKRGNKSSVGWEPEWGLDGEQAPPWEQSWFSPSAAVAASWGHMASEECQQQGH- 291
H + P+ +V P+ G+ APP + +W ++ A+ GH A + GH
Sbjct: 1759 HRGAPAPEAFGSPAVHLAPDLAFQGDGAPPLDATWPFGASPSHAAQGHSAG---RAGGHL 1815
Query: 292 HGPSQQPCQGASSSKWAGLGLEVLGGRRAR 321
H + +P G +++A G L R R
Sbjct: 1816 HPTAGRP--GFEGNEFAPAGASSLTAPRGR 1843
>gi|154146223 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 29.3 bits (64), Expect = 5.6
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 249 WEPEWGLDGEQA-PPWEQSWFSPSAAVAASWGHMASEECQQQGHHGPSQQPCQGASSSKW 307
W+PEWG+ + PP +Q W P+ Q G P + ++ +
Sbjct: 90 WQPEWGMHQQPPHPPPDQPWMPPTPGPMDIVPPSEDSNSQDSGEFAPDNRHIFNQNNHNF 149
Query: 308 AG 309
G
Sbjct: 150 GG 151
>gi|154146193 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 29.3 bits (64), Expect = 5.6
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 249 WEPEWGLDGEQA-PPWEQSWFSPSAAVAASWGHMASEECQQQGHHGPSQQPCQGASSSKW 307
W+PEWG+ + PP +Q W P+ Q G P + ++ +
Sbjct: 90 WQPEWGMHQQPPHPPPDQPWMPPTPGPMDIVPPSEDSNSQDSGEFAPDNRHIFNQNNHNF 149
Query: 308 AG 309
G
Sbjct: 150 GG 151
>gi|149999371 hypothetical protein LOC91056 [Homo sapiens]
Length = 821
Score = 29.3 bits (64), Expect = 5.6
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 30/114 (26%)
Query: 37 AAAHAA---LEHGVIIV------VGIAQGLLEALQGLLEDAEAQEGIAHAQ------ADL 81
AAAH L+ G++ V G+ GL++ LQ L E +G HA+ A L
Sbjct: 506 AAAHCTNWDLQQGLLRVCRALLRAGVRGGLVDLLQVLARQLEDPDGRDHARLYYILLAHL 565
Query: 82 ASELGTCPGTRQPKAGLAVGDGLV--KLAQLLVAACQVQVA---LQEEVGILQL 130
A+ PK G+A+G L LA LVA Q VA +QE +++L
Sbjct: 566 AA----------PKLGVALGPSLAAPALASSLVAENQGFVAALMVQEAPALVRL 609
>gi|126352608 elastin isoform e precursor [Homo sapiens]
Length = 705
Score = 28.9 bits (63), Expect = 7.4
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 33 EAAQAAAHAALEHGVIIVVGIAQGLLEALQGLLEDAEAQEGIAHAQADLASELGTCPGTR 92
EA AAA A ++G++ VG+A G+ G+ G+ LA +G PG
Sbjct: 440 EAQAAAAAKAAKYGLVPGVGVAPGV-----GVAPGVGVAPGVG-----LAPGVGVAPGVG 489
Query: 93 -QPKAGLAVGDGLVKLAQLLVAACQVQVALQ 122
P G+A G G +A +A +V Q
Sbjct: 490 VAPGVGVAPGIGPGGVAAAAKSAAKVAAKAQ 520
>gi|126352322 elastin isoform c precursor [Homo sapiens]
Length = 692
Score = 28.9 bits (63), Expect = 7.4
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 33 EAAQAAAHAALEHGVIIVVGIAQGLLEALQGLLEDAEAQEGIAHAQADLASELGTCPGTR 92
EA AAA A ++G++ VG+A G+ G+ G+ LA +G PG
Sbjct: 445 EAQAAAAAKAAKYGLVPGVGVAPGV-----GVAPGVGVAPGVG-----LAPGVGVAPGVG 494
Query: 93 -QPKAGLAVGDGLVKLAQLLVAACQVQVALQ 122
P G+A G G +A +A +V Q
Sbjct: 495 VAPGVGVAPGIGPGGVAAAAKSAAKVAAKAQ 525
>gi|126352700 elastin isoform b precursor [Homo sapiens]
Length = 677
Score = 28.9 bits (63), Expect = 7.4
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 33 EAAQAAAHAALEHGVIIVVGIAQGLLEALQGLLEDAEAQEGIAHAQADLASELGTCPGTR 92
EA AAA A ++G++ VG+A G+ G+ G+ LA +G PG
Sbjct: 430 EAQAAAAAKAAKYGLVPGVGVAPGV-----GVAPGVGVAPGVG-----LAPGVGVAPGVG 479
Query: 93 -QPKAGLAVGDGLVKLAQLLVAACQVQVALQ 122
P G+A G G +A +A +V Q
Sbjct: 480 VAPGVGVAPGIGPGGVAAAAKSAAKVAAKAQ 510
>gi|148833508 notch1 preproprotein [Homo sapiens]
Length = 2555
Score = 28.9 bits (63), Expect = 7.4
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 294 PSQQPCQGASSSKWAGLGLEVLGGRRARLDLQVRGSQVSAQPCFFPIKTPLTAASPGSVP 353
P QP G SS+ LG L G ++ D+Q G A P ++P A P S+P
Sbjct: 2413 PPPQPHLGVSSAASGHLGRSFLSGEPSQADVQPLGPSSLAVHTILPQESP---ALPTSLP 2469
>gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo
sapiens]
Length = 5033
Score = 28.9 bits (63), Expect = 7.4
Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 14/109 (12%)
Query: 85 LGTCPGTRQPKAGLAVGDGLVKLAQLLVAA-----------CQVQVALQ-EEVGILQLPG 132
LGT T K A+G+ L +LA + A C V E IL LP
Sbjct: 3175 LGTTKNTYVEKLRPALGECLARLAAAMPVAFLEPQLNEYNACSVYTTKSPRERAILGLPN 3234
Query: 133 RVDLDHSELHTATHLLVAAHLRVGCDQAAQHAEAPHEVRALLQHLCPHL 181
V+ ++ L+ A + + A++ E PH + L LC +L
Sbjct: 3235 SVEEMCPDIPVLERLM--ADIGGLAESGARYTEMPHVIEITLPMLCSYL 3281
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,344,392
Number of Sequences: 37866
Number of extensions: 742770
Number of successful extensions: 2094
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 2053
Number of HSP's gapped (non-prelim): 83
length of query: 356
length of database: 18,247,518
effective HSP length: 103
effective length of query: 253
effective length of database: 14,347,320
effective search space: 3629871960
effective search space used: 3629871960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.