Guide to the Human Genome
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Name: DKFZp761E198 Sequence: fasta or formatted (821aa) NCBI GI: 149999371
Description:

hypothetical protein LOC91056

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.2        108           4
 C cysteine            2.6         21           2
 D aspartate           3.5         29           2
 E glutamate           6.1         50           6
 F phenylalanine       2.2         18           2
 G glycine             8.0         66           3
 H histidine           2.6         21           1
 I isoleucine          0.6          5           1
 K lysine              1.3         11           1
 L leucine            21.3        175           3
 M methionine          0.7          6           1
 N asparagine          0.7          6           1
 P proline             9.4         77           3
 Q glutamine           5.0         41           2
 R arginine            6.1         50           2
 S serine              4.3         35           2
 T threonine           3.5         29           2
 V valine              5.8         48           3
 W tryptophan          1.5         12           1
 Y tyrosine            1.6         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC91056 
HDAC10                0.005   histone deacetylase 10 isoform 2 
HDAC10                0.005   histone deacetylase 10 isoform 1 
C8orf30B              0.004   PREDICTED: hypothetical protein LOC728071 
TRIM15                0.004   tripartite motif protein 15 
C8orf30A              0.004   brain protein 16 
CDH15                 0.004   cadherin 15 preproprotein 
LOC100293294          0.004   PREDICTED: hypothetical protein 
LOC728767             0.004   PREDICTED: hypothetical protein 
LOC728767             0.004   PREDICTED: hypothetical protein 
EP400                 0.004   E1A binding protein p400 
FOXI3                 0.004   forkhead box I3 
BCORL1                0.004   BCL6 co-repressor-like 1 
FAM48B1               0.004   hypothetical protein LOC100130302 
AHDC1                 0.004   AT hook, DNA binding motif, containing 1 
DNHD1                 0.003   dynein heavy chain domain 1 isoform 1 
NOD2                  0.003   nucleotide-binding oligomerization domain containing...
LOC100294335          0.003   PREDICTED: similar to c114 SLIT-like testicular pro...
LOC100294335          0.003   PREDICTED: similar to c114 SLIT-like testicular pro...
ZBTB3                 0.003   zinc finger and BTB domain containing 3 
KLHL8                 0.003   kelch-like 8 
LRRC37A2              0.003   c114 SLIT-like testicular protein 
LRRC37A               0.003   leucine rich repeat containing 37A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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