Guide to the Human Genome
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Name: LOC100288271 Sequence: fasta or formatted (85aa) NCBI GI: 239741005
Description:

PREDICTED: hypothetical protein XP_002342062

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4          8           1
 C cysteine            2.4          2           1
 D aspartate           3.5          3           2
 E glutamate           3.5          3           1
 F phenylalanine       2.4          2           1
 G glycine            12.9         11           1
 H histidine           3.5          3           1
 I isoleucine          1.2          1           1
 K lysine              1.2          1           1
 L leucine             8.2          7           1
 M methionine          1.2          1           1
 N asparagine          0.0          0           0
 P proline             9.4          8           2
 Q glutamine           5.9          5           1
 R arginine           12.9         11           2
 S serine              7.1          6           1
 T threonine           3.5          3           1
 V valine              2.4          2           1
 W tryptophan          5.9          5           1
 Y tyrosine            3.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342062 
LOC100293580          1.000   PREDICTED: hypothetical protein 
LOC100293110          0.036   PREDICTED: hypothetical protein 
LOC100289572          0.036   PREDICTED: hypothetical protein 
LOC100289572          0.036   PREDICTED: hypothetical protein XP_002343123 
LOC100134152          0.030   PREDICTED: similar to synaptotagmin XV-b 
MYCL1                 0.024   l-myc-1 proto-oncogene isoform 2 
MYCL1                 0.024   l-myc-1 proto-oncogene isoform 1 
MYCL1                 0.024   l-myc-1 proto-oncogene isoform 1 
LOC100289902          0.018   PREDICTED: hypothetical protein XP_002347558 
LOC100289428          0.018   PREDICTED: hypothetical protein XP_002343411 
LOC100288601          0.018   PREDICTED: hypothetical protein XP_002343399 
LOC100288381          0.018   PREDICTED: hypothetical protein XP_002343397 
LOC100289637          0.018   PREDICTED: hypothetical protein XP_002343387 
LOC100291609          0.012   PREDICTED: hypothetical protein XP_002346061 
C1orf167              0.012   PREDICTED: chromosome 1 open reading frame 167 [Hom...
C1orf167              0.012   PREDICTED: chromosome 1 open reading frame 167 [Hom...
LOC100288426          0.012   PREDICTED: hypothetical protein XP_002343430 
C1orf167              0.012   PREDICTED: hypothetical protein LOC284498 
HYAL1                 0.006   hyaluronoglucosaminidase 1 isoform 3 
HYAL1                 0.006   hyaluronoglucosaminidase 1 isoform 2 
HYAL1                 0.006   hyaluronoglucosaminidase 1 isoform 1 
HYAL1                 0.006   hyaluronoglucosaminidase 1 isoform 1 
HYAL1                 0.006   hyaluronoglucosaminidase 1 isoform 1 
LOC100293553          0.006   PREDICTED: similar to L-myc-2 protein, partial [Hom...
LOC100290395          0.006   PREDICTED: hypothetical protein XP_002346998 
COL8A2                0.006   collagen, type VIII, alpha 2 
LOC100291206          0.006   PREDICTED: hypothetical protein XP_002347014 
CRLF3                 0.006   cytokine receptor-like factor 3 
LOC401399             0.006   hypothetical protein LOC401399 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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