Guide to the Human Genome
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Name: LOC100289572 Sequence: fasta or formatted (356aa) NCBI GI: 239750031
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {356aa} PREDICTED: hypothetical protein XP_002343123
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.5         48           3
 C cysteine            3.1         11           1
 D aspartate           3.1         11           1
 E glutamate           6.2         22           2
 F phenylalanine       1.1          4           2
 G glycine             9.3         33           2
 H histidine           5.3         19           2
 I isoleucine          2.5          9           2
 K lysine              2.0          7           1
 L leucine            14.6         52           3
 M methionine          0.6          2           1
 N asparagine          0.6          2           1
 P proline             7.0         25           2
 Q glutamine           9.0         32           3
 R arginine            3.7         13           2
 S serine              6.7         24           3
 T threonine           2.2          8           1
 V valine              6.7         24           2
 W tryptophan          2.8         10           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289572          1.000   PREDICTED: hypothetical protein XP_002343123 
LOC100293110          0.936   PREDICTED: hypothetical protein 
FAM53B                0.014   hypothetical protein LOC9679 
LOC284988             0.013   PREDICTED: hypothetical protein 
C2orf16               0.011   hypothetical protein LOC84226 
KCNH3                 0.011   potassium voltage-gated channel, subfamily H (eag-re...
FLG                   0.011   filaggrin 
C6orf15               0.011   STG protein 
TLN2                  0.010   talin 2 
FAM98C                0.009   hypothetical protein LOC147965 
LOC100293580          0.009   PREDICTED: hypothetical protein 
LOC100288271          0.009   PREDICTED: hypothetical protein XP_002342062 
ABHD14A               0.009   abhydrolase domain containing 14A 
BAI2                  0.009   brain-specific angiogenesis inhibitor 2 
MARCH4                0.007   membrane-associated ring finger (C3HC4) 4 
LOC100132168          0.007   PREDICTED: hypothetical protein 
BSN                   0.007   bassoon protein 
TECPR1                0.007   tectonin beta-propeller repeat containing 1 
CTDP1                 0.006   CTD (carboxy-terminal domain, RNA polymerase II, pol...
CTDP1                 0.006   CTD (carboxy-terminal domain, RNA polymerase II, pol...
ZNF469                0.006   zinc finger protein 469 
SFRS18                0.006   splicing factor, arginine/serine-rich 130 
SFRS18                0.006   splicing factor, arginine/serine-rich 130 
DKFZp761E198          0.006   hypothetical protein LOC91056 
ELN                   0.006   elastin isoform e precursor 
ELN                   0.006   elastin isoform c precursor 
ELN                   0.006   elastin isoform b precursor 
NOTCH1                0.006   notch1 preproprotein 
RYR1                  0.006   skeletal muscle ryanodine receptor isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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