Guide to the Human Genome
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Name: LOC100293110 Sequence: fasta or formatted (516aa) NCBI GI: 239755499
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.2         68           3
 C cysteine            2.3         12           1
 D aspartate           3.1         16           1
 E glutamate           6.0         31           2
 F phenylalanine       1.6          8           2
 G glycine             9.5         49           2
 H histidine           6.0         31           2
 I isoleucine          2.7         14           2
 K lysine              1.9         10           2
 L leucine            15.1         78           3
 M methionine          0.4          2           1
 N asparagine          1.2          6           1
 P proline             8.1         42           2
 Q glutamine           8.5         44           3
 R arginine            3.7         19           2
 S serine              5.4         28           3
 T threonine           2.1         11           2
 V valine              6.8         35           2
 W tryptophan          2.3         12           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289572          0.640   PREDICTED: hypothetical protein 
LOC100289572          0.640   PREDICTED: hypothetical protein XP_002343123 
FAM53B                0.010   hypothetical protein LOC9679 
PDS5A                 0.010   PDS5, regulator of cohesion maintenance, homolog A ...
PDS5A                 0.010   PDS5, regulator of cohesion maintenance, homolog A ...
LOC284988             0.009   PREDICTED: hypothetical protein 
FOXN4                 0.008   forkhead box N4 
C2orf16               0.008   hypothetical protein LOC84226 
LOC100292713          0.008   PREDICTED: similar to AGAP002076-PA 
LOC100291037          0.008   PREDICTED: hypothetical protein XP_002347503 
LOC100287214          0.008   PREDICTED: hypothetical protein XP_002343322 
KCNH3                 0.008   potassium voltage-gated channel, subfamily H (eag-re...
FLG                   0.008   filaggrin 
TLN2                  0.008   talin 2 
C6orf15               0.008   STG protein 
MAP7D1                0.007   MAP7 domain containing 1 
LOC100293729          0.007   PREDICTED: hypothetical protein 
LOC100291350          0.007   PREDICTED: hypothetical protein XP_002347249 
LOC100288909          0.007   PREDICTED: hypothetical protein XP_002343114 
FAM98C                0.006   hypothetical protein LOC147965 
LOC100293580          0.006   PREDICTED: hypothetical protein 
LOC100288271          0.006   PREDICTED: hypothetical protein XP_002342062 
ABHD14A               0.006   abhydrolase domain containing 14A 
RBM20                 0.006   RNA binding motif protein 20 
BAI2                  0.006   brain-specific angiogenesis inhibitor 2 
PRR7                  0.006   proline rich 7 (synaptic) 
ELN                   0.005   elastin isoform e precursor 
ELN                   0.005   elastin isoform c precursor 
ELN                   0.005   elastin isoform b precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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