Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SIGIRR Sequence: fasta or formatted (410aa) NCBI GI: 205277451
Description:

single Ig IL-1R-related molecule

Referenced in:

Toll-like Receptors

Other entries for this name:
alt mRNA [410aa] single Ig IL-1R-related molecule
alt mRNA [410aa] single Ig IL-1R-related molecule
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         25           2
 C cysteine            2.4         10           1
 D aspartate           7.1         29           2
 E glutamate           4.9         20           1
 F phenylalanine       3.4         14           1
 G glycine             6.3         26           2
 H histidine           2.2          9           1
 I isoleucine          2.2          9           1
 K lysine              2.7         11           1
 L leucine            14.6         60           3
 M methionine          0.7          3           1
 N asparagine          2.2          9           1
 P proline             6.8         28           2
 Q glutamine           3.2         13           1
 R arginine            8.0         33           3
 S serine             10.0         41           2
 T threonine           3.2         13           1
 V valine              9.0         37           2
 W tryptophan          1.7          7           1
 Y tyrosine            3.2         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   single Ig IL-1R-related molecule 
SIGIRR                1.000   single Ig IL-1R-related molecule 
SIGIRR                1.000   single Ig IL-1R-related molecule 
LOC100294402          0.481   PREDICTED: similar to single Ig IL-1R-related molec...
IL1RAPL2              0.088   interleukin 1 receptor accessory protein-like 2 [Hom...
IL1RAPL1              0.079   interleukin 1 receptor accessory protein-like 1 precu...
IL1RAP                0.074   interleukin 1 receptor accessory protein isoform 1 [H...
IL18R1                0.067   interleukin 18 receptor 1 precursor 
IL1RL1                0.056   interleukin 1 receptor-like 1 isoform 1 precursor [H...
IL1RL2                0.055   interleukin 1 receptor-like 2 precursor 
IL1R1                 0.055   interleukin 1 receptor, type I precursor 
IL18RAP               0.053   interleukin 18 receptor accessory protein precursor [...
TLR2                  0.027   toll-like receptor 2 
MYD88                 0.025   myeloid differentiation primary response gene 88 [H...
TLR4                  0.024   toll-like receptor 4 precursor 
IGSF9B                0.017   immunoglobulin superfamily, member 9B 
CXADR                 0.016   coxsackie virus and adenovirus receptor precursor [Ho...
TLR6                  0.015   toll-like receptor 6 
TLR1                  0.015   toll-like receptor 1 
TLR5                  0.015   toll-like receptor 5 
TLR10                 0.012   toll-like receptor 10 precursor 
TLR10                 0.012   toll-like receptor 10 precursor 
OBSCN                 0.012   obscurin, cytoskeletal calmodulin and titin-interact...
OBSCN                 0.012   obscurin, cytoskeletal calmodulin and titin-interac...
BCAM                  0.011   basal cell adhesion molecule isoform 2 precursor [Ho...
BCAM                  0.011   basal cell adhesion molecule isoform 1 precursor [Ho...
HMCN1                 0.011   hemicentin 1 
IGDCC3                0.011   putative neuronal cell adhesion molecule 
TTN                   0.010   titin isoform N2-A 
HMCN2                 0.009   PREDICTED: hemicentin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press