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Search of human proteins with 239749594
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749594 PREDICTED: hypothetical protein XP_002347096 [Homo
sapiens]
(201 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749594 PREDICTED: hypothetical protein XP_002347096 [Homo ... 421 e-118
gi|239743861 PREDICTED: hypothetical protein XP_002342981 [Homo ... 287 4e-78
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 50 2e-06
gi|169168202 PREDICTED: hypothetical protein [Homo sapiens] 49 4e-06
gi|169167967 PREDICTED: hypothetical protein [Homo sapiens] 49 4e-06
gi|169167681 PREDICTED: hypothetical protein [Homo sapiens] 49 4e-06
gi|115511036 alpha-kinase 3 [Homo sapiens] 48 6e-06
gi|169161029 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|45439357 elongin A2 [Homo sapiens] 45 3e-05
gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo ... 45 4e-05
gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo ... 45 4e-05
gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo sap... 44 7e-05
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 44 9e-05
gi|118200352 hypothetical protein LOC642273 [Homo sapiens] 44 1e-04
gi|40353727 synaptopodin isoform A [Homo sapiens] 42 4e-04
gi|7662302 TBK1 binding protein 1 [Homo sapiens] 42 4e-04
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 42 4e-04
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 41 6e-04
gi|19924099 synapsin I isoform Ia [Homo sapiens] 41 8e-04
gi|19924097 synapsin I isoform Ib [Homo sapiens] 41 8e-04
gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo ... 40 0.001
gi|239750586 PREDICTED: hypothetical protein XP_002347439 [Homo ... 40 0.001
gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo ... 40 0.001
gi|239744883 PREDICTED: hypothetical protein XP_002344274 [Homo ... 40 0.001
gi|239750468 PREDICTED: similar to Os05g0242100 [Homo sapiens] 40 0.001
gi|150170699 kinesin family member 26A [Homo sapiens] 40 0.001
gi|239756899 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|113427491 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo ... 39 0.002
gi|239745902 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
>gi|239749594 PREDICTED: hypothetical protein XP_002347096 [Homo
sapiens]
Length = 201
Score = 421 bits (1082), Expect = e-118
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MSTRPPRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHL 60
MSTRPPRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHL
Sbjct: 1 MSTRPPRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHL 60
Query: 61 APVRVLPNTAAEATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFST 120
APVRVLPNTAAEATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFST
Sbjct: 61 APVRVLPNTAAEATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFST 120
Query: 121 LGAGFQPPLGRGGAGRGGAPASLASSARPCAAPALPYRERARPAALHWRTPASPSLGSGW 180
LGAGFQPPLGRGGAGRGGAPASLASSARPCAAPALPYRERARPAALHWRTPASPSLGSGW
Sbjct: 121 LGAGFQPPLGRGGAGRGGAPASLASSARPCAAPALPYRERARPAALHWRTPASPSLGSGW 180
Query: 181 FRRRARRPRSCCGEAASPGAN 201
FRRRARRPRSCCGEAASPGAN
Sbjct: 181 FRRRARRPRSCCGEAASPGAN 201
>gi|239743861 PREDICTED: hypothetical protein XP_002342981 [Homo
sapiens]
Length = 139
Score = 287 bits (735), Expect = 4e-78
Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MSTRPPRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHL 60
MSTRPPRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHL
Sbjct: 1 MSTRPPRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHL 60
Query: 61 APVRVLPNTAAEATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFST 120
APVRVLPNTAAEATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFST
Sbjct: 61 APVRVLPNTAAEATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFST 120
Query: 121 LGAGFQPPLGRGGAGRG 137
LGAGFQPPLGRGGAGRG
Sbjct: 121 LGAGFQPPLGRGGAGRG 137
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 49.7 bits (117), Expect = 2e-06
Identities = 57/192 (29%), Positives = 75/192 (39%), Gaps = 26/192 (13%)
Query: 4 RPPRQATYQLCEGGKSPGKAF-RAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAP 62
R P L GG +P K+ + + GL+ E PP G E+ P
Sbjct: 1009 RSPEAGEKVLVNGGLTPPKSEDKVSENGGLRFPRNTERPPETGPWRAPGPWEKTPESWGP 1068
Query: 63 VRVLPNTAAEATAKRAPVPSAPLPA------ARSPRGPQP----LSPRSSWVRGMPGRGG 112
+ A E + +RAP PSA + + A P GP P L P + R P GG
Sbjct: 1069 APTIGEPAPETSLERAPAPSAVVSSRNGGETAPGPLGPAPKNGTLEPGTE--RRAPETGG 1126
Query: 113 HQRPLFS---TLGAGFQPPLGRGGAGRGG------APASLASSARP-CAAPALPYRERAR 162
R + LG+G + P+G G A GG A A + RP P LP A+
Sbjct: 1127 APRAPGAGRLDLGSGGRAPVGTGTAPGGGPGSGVDAKAGWVDNTRPQPPPPPLPPPPEAQ 1186
Query: 163 PAALHWRTPASP 174
P L PA P
Sbjct: 1187 PRRLE---PAPP 1195
Score = 33.5 bits (75), Expect = 0.12
Identities = 35/108 (32%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Query: 84 PLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFSTLGAGFQPPL----GRGGAGR-GG 138
P P A S P LS + G PG + G R GAGR GG
Sbjct: 463 PWPPAHSAPRPGTLSSPFPLLDGFPGADPDDVLTVTESSRGLNLECLWEKARRGAGRGGG 522
Query: 139 APASLASSARPC--AAPALPYRER-ARPAALHWRTPASPSLGSGWFRR 183
APA +SA P A P+ P+ E + P+ L + SPS+ S ++ R
Sbjct: 523 APAWQPASAPPAPHANPSNPFYEALSTPSVLPVISARSPSVSSEYYIR 570
Score = 33.1 bits (74), Expect = 0.16
Identities = 39/134 (29%), Positives = 42/134 (31%), Gaps = 12/134 (8%)
Query: 41 PPGPSKAARRGRGEQVRTHLAPVRVLP--------NTAAEATAKRAPVPSAPLPAARSPR 92
PP + R RG +AP P AA R P P AP P PR
Sbjct: 732 PPEDDSSLRAERGSLADLPMAPPASAPPEFLDPLMGAAAPQYPGRGP-PPAPPPPPPPPR 790
Query: 93 GPQP--LSPRSSWVRGMPGRG-GHQRPLFSTLGAGFQPPLGRGGAGRGGAPASLASSARP 149
P SP PG G P G + P GA GG A RP
Sbjct: 791 APADPAASPDPPSAVASPGSGLSSPGPKPGDSGYETETPFSPEGAFPGGGAAEEEGVPRP 850
Query: 150 CAAPALPYRERARP 163
A P P RP
Sbjct: 851 RAPPEPPDPGAPRP 864
Score = 30.0 bits (66), Expect = 1.4
Identities = 31/115 (26%), Positives = 41/115 (35%), Gaps = 20/115 (17%)
Query: 17 GKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRG------------RGEQVRTHLAPVR 64
G+ P A P P +P +P PS A G G + T +P
Sbjct: 775 GRGPPPAPPPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGPKPGDSGYETETPFSPEG 834
Query: 65 VLPNTAAEATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVRG-MPGRGGHQRPLF 118
P A A + P P AP P P P +PR G +P G ++P F
Sbjct: 835 AFPGGGA-AEEEGVPRPRAP------PEPPDPGAPRPPPDPGPLPLPGPREKPTF 882
>gi|169168202 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 48.5 bits (114), Expect = 4e-06
Identities = 57/198 (28%), Positives = 74/198 (37%), Gaps = 31/198 (15%)
Query: 20 PGKAFRAQPSPGLQHRNPLETPPGPS-KAARRGRGEQVRTHLAPVRVLPNTAAEATAKRA 78
PGK +PSPG + PL G R ++ R H + R + A +RA
Sbjct: 153 PGKTSAPRPSPGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRA 212
Query: 79 PVPSAPLPAARSPRGPQPLS---PRSSWVRGMPGRGGHQ--------RPLFSTLGAGFQP 127
P A R R +P + P +S +G G + R L G +P
Sbjct: 213 PSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEP 272
Query: 128 P---LGRGGAGRGGAPASLASS---ARPCAAPALPYRERARPAALHWRTPASPSLGSGWF 181
P R GAG + S ARPC RE+ PA L ++PA PSL
Sbjct: 273 PGWSRERAGAGLSRDSPQVPRSGSWARPC-------REQGHPAVLALQSPAPPSLARAAA 325
Query: 182 RRRARRPRSCCGEAASPG 199
RRR G A PG
Sbjct: 326 RRRGP------GGATEPG 337
>gi|169167967 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 48.5 bits (114), Expect = 4e-06
Identities = 57/198 (28%), Positives = 74/198 (37%), Gaps = 31/198 (15%)
Query: 20 PGKAFRAQPSPGLQHRNPLETPPGPS-KAARRGRGEQVRTHLAPVRVLPNTAAEATAKRA 78
PGK +PSPG + PL G R ++ R H + R + A +RA
Sbjct: 153 PGKTSAPRPSPGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRA 212
Query: 79 PVPSAPLPAARSPRGPQPLS---PRSSWVRGMPGRGGHQ--------RPLFSTLGAGFQP 127
P A R R +P + P +S +G G + R L G +P
Sbjct: 213 PSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLDNGRGPRSRLPGLAGGVEP 272
Query: 128 P---LGRGGAGRGGAPASLASS---ARPCAAPALPYRERARPAALHWRTPASPSLGSGWF 181
P R GAG + S ARPC RE+ PA L ++PA PSL
Sbjct: 273 PGWSRERAGAGLSRDSPQVPRSGSWARPC-------REQGHPAVLALQSPAPPSLARAAA 325
Query: 182 RRRARRPRSCCGEAASPG 199
RRR G A PG
Sbjct: 326 RRRGP------GGATEPG 337
>gi|169167681 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 48.5 bits (114), Expect = 4e-06
Identities = 57/198 (28%), Positives = 74/198 (37%), Gaps = 31/198 (15%)
Query: 20 PGKAFRAQPSPGLQHRNPLETPPGPS-KAARRGRGEQVRTHLAPVRVLPNTAAEATAKRA 78
PGK +PSPG + PL G R ++ R H + R + A +RA
Sbjct: 153 PGKTSAPRPSPGGRRGRPLGAARGTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRA 212
Query: 79 PVPSAPLPAARSPRGPQPLS---PRSSWVRGMPGRGGHQ--------RPLFSTLGAGFQP 127
P A R R +P + P +S +G G + R L G +P
Sbjct: 213 PSRRRNFGAPRGSRRLRPDAGKFPEASGGKGQRAAGAERVLDNGRGPRSRLPGLAGGVEP 272
Query: 128 P---LGRGGAGRGGAPASLASS---ARPCAAPALPYRERARPAALHWRTPASPSLGSGWF 181
P R GAG + S ARPC RE+ PA L ++PA PSL
Sbjct: 273 PGWSRERAGAGLSRDSPQVPRSGSWARPC-------REQGHPAVLALQSPAPPSLARAAA 325
Query: 182 RRRARRPRSCCGEAASPG 199
RRR G A PG
Sbjct: 326 RRRGP------GGATEPG 337
>gi|115511036 alpha-kinase 3 [Homo sapiens]
Length = 1907
Score = 47.8 bits (112), Expect = 6e-06
Identities = 54/188 (28%), Positives = 72/188 (38%), Gaps = 18/188 (9%)
Query: 21 GKAFRAQPSPGLQH-RNPLE---TPPGPSKAARRGRGEQVRTHLAPVRVLPNTAAEATAK 76
G+A R S G R P TP KA G G++V L + + A +
Sbjct: 574 GRAARGPGSSGTDSTRKPASAVGTPDKAQKAPGPGPGQEVYFSLKDMYLENTQAVRPLGE 633
Query: 77 RAPVPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQ---RPLFSTLGAGFQPPLGRGG 133
P + SP+G PL RS V G PG+ H +P F PP +G
Sbjct: 634 EGPQTLSVRAPGESPKGKAPLRARSEGVPGAPGQPTHSLTPQPTRPFNRKRFAPPKPKGE 693
Query: 134 AGRGGAPASLASSARPCAAPALPYRERARPAALHWRTPASPSLGSGWFRRRARRPRSCCG 193
A P S S A C A +L +A P A + P P+ RR R + G
Sbjct: 694 ATTDSKPISSLSQAPECGAQSL---GKAPPQA-SVQVPTPPAR-----RRHGTRDSTLQG 744
Query: 194 EAA--SPG 199
+A +PG
Sbjct: 745 QAGHRTPG 752
>gi|169161029 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 45.8 bits (107), Expect = 2e-05
Identities = 57/167 (34%), Positives = 72/167 (43%), Gaps = 38/167 (22%)
Query: 15 EGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVRVLPNTAAEAT 74
EGG+SPG +PSPG R + P ++ R+ RG R P+RVLP
Sbjct: 122 EGGRSPGGGL--EPSPGA--RGAVGAAPAAARH-RKPRGRSRRAPQMPLRVLP------- 169
Query: 75 AKRAPVPSAP-LPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFSTLGAGFQPPLGRGG 133
P P L A G + L R RG+PGR G Q GA PP+G
Sbjct: 170 ------PILPGLSRAGGATGGRGLPGR----RGLPGRSGLQ-------GAAVPPPVGVPS 212
Query: 134 AGRGGAPASLASSARPCAAPALPYRERARPAALHWRTPASPSLGSGW 180
RG +LA++A P P RA P ALH PS+G G+
Sbjct: 213 L-RGRPWEALATAATPRRCPL--QLLRAGP-ALH----CPPSVGRGF 251
>gi|45439357 elongin A2 [Homo sapiens]
Length = 753
Score = 45.4 bits (106), Expect = 3e-05
Identities = 52/170 (30%), Positives = 66/170 (38%), Gaps = 24/170 (14%)
Query: 28 PSPGLQHRNPLE-TPPGPSKAARRGRGEQVRTHLAPVRVLPNTAAEATAKRAPVPSAPLP 86
PS +HR TPPG + R + R R+ P A + +P +APL
Sbjct: 122 PSHSPEHRRTARRTPPGQQRPHPRSHSREPRAERKCPRIAP--ADSGRYRASPTRTAPL- 178
Query: 87 AARSPRGPQPLSPRSSWVRGMPGRG-GHQRPLFSTLGAGFQ-PPLGRGGAGRGGAPASLA 144
R P GP+P +P PGRG H L G Q P G+ S
Sbjct: 179 --RMPEGPEPAAPGK-----QPGRGHTHAAQGGPLLCPGCQGQPQGKAVVSHSKGHKSSR 231
Query: 145 SSARP-CA-----APALPYRERARPAALHWRTPASPSLGSGWFRRRARRP 188
RP CA +P L RE++ A L TP PS W R R+P
Sbjct: 232 QEKRPLCAQGDWHSPTL-IREKSCGACLREETPRMPS----WASARDRQP 276
>gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo
sapiens]
Length = 208
Score = 45.1 bits (105), Expect = 4e-05
Identities = 51/166 (30%), Positives = 60/166 (36%), Gaps = 22/166 (13%)
Query: 34 HRNPLETPPGPSKAAR-----RGRGEQVRTHLAPVRVLPNTAAEATAKRAPVPSAPLPAA 88
HR LE P+ R + G R A R P A A ++R P
Sbjct: 45 HRKQLEDTGSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPA-------- 96
Query: 89 RSPRGPQPLSPRSSWV-RGMPGRGGHQRPLFSTLGAGFQPPLGRGGAGRGGAPASLASSA 147
SP GP R +W R +P G P + A PPLG+ G A
Sbjct: 97 -SPTGPPETRARLAWAPRFLPTNGRRPSPPRPPMSAP-TPPLGKSEPGEPETSGPRAYLR 154
Query: 148 RPCAAPALPYRERARPAALHWRTPASPSLGSGWFRRRARRPRSCCG 193
P A+ AL PA P SP L S W R ARR RS G
Sbjct: 155 DPGASAALRQVLATGPAQ-----PTSPRLVSAW-SRGARRERSSRG 194
>gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo
sapiens]
Length = 208
Score = 45.1 bits (105), Expect = 4e-05
Identities = 51/166 (30%), Positives = 60/166 (36%), Gaps = 22/166 (13%)
Query: 34 HRNPLETPPGPSKAAR-----RGRGEQVRTHLAPVRVLPNTAAEATAKRAPVPSAPLPAA 88
HR LE P+ R + G R A R P A A ++R P
Sbjct: 45 HRKQLEDTGSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAHAHSRRLPA-------- 96
Query: 89 RSPRGPQPLSPRSSWV-RGMPGRGGHQRPLFSTLGAGFQPPLGRGGAGRGGAPASLASSA 147
SP GP R +W R +P G P + A PPLG+ G A
Sbjct: 97 -SPTGPPETRARLAWAPRFLPTNGRRPSPPRPPMSAP-TPPLGKSEPGEPETSGPRAYLR 154
Query: 148 RPCAAPALPYRERARPAALHWRTPASPSLGSGWFRRRARRPRSCCG 193
P A+ AL PA P SP L S W R ARR RS G
Sbjct: 155 DPGASAALRQVLATGPAQ-----PTSPRLVSAW-SRGARRERSSRG 194
>gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo
sapiens]
Length = 254
Score = 44.3 bits (103), Expect = 7e-05
Identities = 47/178 (26%), Positives = 59/178 (33%), Gaps = 31/178 (17%)
Query: 5 PPRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVR 64
PP A +C P A L+ NPL P + G +AP
Sbjct: 71 PPATAPAVVCPAAAGPSAA-------SLRAANPLAVAPAAVRRPAATLGAASPAAVAPAA 123
Query: 65 VLPNTAAEATAKR-APVPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFSTLGA 123
V P A+ + A A P+A PAA SP PL+ P ++
Sbjct: 124 VCPAAASPSAASLCAASPTAAAPAAASPAAAAPLAVN-------PAAAAPAAACVQSVAE 176
Query: 124 GFQPPLGRGGAGRGGAPASLASSARPCAAPALPYRERARPAAL------HWRTPASPS 175
PL P S ++ PCA P L A P AL HW T PS
Sbjct: 177 SPATPLAI------AQPVSSPAAPAPCAVPPL----AAEPTALAYLPLHHWPTDVDPS 224
Score = 32.3 bits (72), Expect = 0.28
Identities = 36/111 (32%), Positives = 47/111 (42%), Gaps = 14/111 (12%)
Query: 61 APVRVLPNTAAE-ATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFS 119
AP V P A ATA P+A P+A S R PL+ + VR RP +
Sbjct: 60 APAAVRPPVAGPPATAPAVVCPAAAGPSAASLRAANPLAVAPAAVR---------RPA-A 109
Query: 120 TLGAGFQ---PPLGRGGAGRGGAPASLASSARPCAAPALPYRERARPAALH 167
TLGA P A + ASL +++ AAPA A P A++
Sbjct: 110 TLGAASPAAVAPAAVCPAAASPSAASLCAASPTAAAPAAASPAAAAPLAVN 160
Score = 31.6 bits (70), Expect = 0.47
Identities = 41/146 (28%), Positives = 51/146 (34%), Gaps = 30/146 (20%)
Query: 57 RTHLAPVRVLPNTAAEATAKRAPV-PSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQR 115
R AP V P A A A V P+A P+A S PL P + VR
Sbjct: 16 RPAAAPAAVRPPAAGPPAAAPAVVYPAAAGPSAASLCAANPLVPAPAAVR---------- 65
Query: 116 PLFSTLGAGFQPPLGRGGAGRGGAPASLASSARPCAA-PALPYRERARPAALHWRTPASP 174
PP+ G PA+ + P AA P+ A P A+ P
Sbjct: 66 -----------PPVA-------GPPATAPAVVCPAAAGPSAASLRAANPLAVAPAAVRRP 107
Query: 175 SLGSGWFRRRARRPRSCCGEAASPGA 200
+ G A P + C AASP A
Sbjct: 108 AATLGAASPAAVAPAAVCPAAASPSA 133
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 43.9 bits (102), Expect = 9e-05
Identities = 58/219 (26%), Positives = 84/219 (38%), Gaps = 51/219 (23%)
Query: 32 LQHRNPLETP-PGPSKAARRGRGEQVRTH-LAPVRVLPNTAAEATAKRAPVPSAPLPAAR 89
++ R P +P PG ++ AR E+V H +P + A+ ++ AP P+AP A
Sbjct: 285 VRQRPPDASPSPGSARPAREPSLERVGGHPTSPAALSRAWASSWESEAAPEPAAPPAAPS 344
Query: 90 SPRGP--------QPLSPRSSWVRGMPGRGGHQRPLFSTLGAGFQ--PP------LGRGG 133
P P Q + + RG+PGR ++P T G + PP GR G
Sbjct: 345 PPDSPAEGRLVKAQYIPGAQAATRGLPGRAARRKPPPLTRGRSVEQSPPRERPRAAGRRG 404
Query: 134 -----AGRGGAPASL-------------ASSARPCAAPALPYRERARPAALHWRTPASPS 175
+GR G+P + +SA P P P ER P R +P+
Sbjct: 405 RMAEASGRRGSPRARKASRSQSETSLLGRASAVPSGPPKYPTAEREEPRPPRPRRGPAPT 464
Query: 176 L---GSGWFRR------------RARRPRSCCGEAASPG 199
L +G RR R RPR+ PG
Sbjct: 465 LAAQAAGSCRRWRSTAEIDAADGRRVRPRAPAARVPGPG 503
Score = 32.3 bits (72), Expect = 0.28
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 20 PGKAFRAQPSPGLQHRNPLETPP--GPSKAARRGRGEQVRTHLAPVRVLPNTAAEA---- 73
PG+A R +P P + R+ ++PP P A RRGR + R + +++
Sbjct: 371 PGRAARRKPPPLTRGRSVEQSPPRERPRAAGRRGRMAEASGRRGSPRARKASRSQSETSL 430
Query: 74 TAKRAPVPSAP--LPAA--RSPRGPQP 96
+ + VPS P P A PR P+P
Sbjct: 431 LGRASAVPSGPPKYPTAEREEPRPPRP 457
Score = 29.3 bits (64), Expect = 2.4
Identities = 46/152 (30%), Positives = 54/152 (35%), Gaps = 24/152 (15%)
Query: 69 TAAEATAKRAPVP---SAPLPAARSPRGPQPLSPRSSWVRGMP---GRGGHQRPLFSTLG 122
+A E RA VP SAP P A GP+ S R P H + S
Sbjct: 172 SAPEVVGARAAVPRSFSAPYPTAGGSAGPEACSSAERRARAGPFLTPSPLHAVAMRSPRP 231
Query: 123 AGFQPPLGRGGAGRGGAPASLASSA-----------RPCAAPALPYRERARPAALHWRTP 171
G +PP AG G P SA +P +P R ++ R P
Sbjct: 232 CG-RPPTDSPDAGGAGRPLDGYISALLRRRRRRGAGQPRTSPGGADGGPRRQNSVRQRPP 290
Query: 172 -ASPSLGSGWFRRRARRP--RSCCGEAASPGA 200
ASPS GS R AR P G SP A
Sbjct: 291 DASPSPGSA---RPAREPSLERVGGHPTSPAA 319
>gi|118200352 hypothetical protein LOC642273 [Homo sapiens]
Length = 321
Score = 43.5 bits (101), Expect = 1e-04
Identities = 56/191 (29%), Positives = 74/191 (38%), Gaps = 28/191 (14%)
Query: 23 AFRAQPSPGLQHRNPLET-PPGPSKAARRGRGEQVRTHLAP-VRVLPNT----AAEATAK 76
A A P+ L R+P T P ++ ARR E++ A VR P T A+E +
Sbjct: 6 ALSAPPNERLLPRDPAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASEGSGP 65
Query: 77 RA---------PVPSAPLPAARSPRGPQPLSPRS--------SWVRGMPGRGGHQ---RP 116
A P AP P AR +PL P S +VRG G +
Sbjct: 66 GAIKCPGNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKK 125
Query: 117 LFSTLGAGFQPPLGRGGAGRGGAPASLASSARPCAAPALPYRERARPAALHWRTPASPSL 176
LF G P G G+ G P ++ ++ P A PA P E PAA + P+
Sbjct: 126 LFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATP--ETPAPAARSAAPSSVPAA 183
Query: 177 GSGWFRRRARR 187
G R RR
Sbjct: 184 PPGPEPRVVRR 194
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 42.0 bits (97), Expect = 4e-04
Identities = 32/94 (34%), Positives = 36/94 (38%), Gaps = 13/94 (13%)
Query: 19 SPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVRVLPNTAAEATAKRA 78
SP A P P R P PP P R + R P +AA A A
Sbjct: 771 SPRSAGAENPRPFSPPRAPPPPPPPPPPPPRMRSPQPAR---------PGSAAVPGAAFA 821
Query: 79 PVPSAPLPA----ARSPRGPQPLSPRSSWVRGMP 108
P+P +PLPA SPR P P PR R P
Sbjct: 822 PIPRSPLPAGPSSCTSPRSPLPAPPRPFLYRRSP 855
Score = 28.5 bits (62), Expect = 4.0
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 68 NTAAEATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFSTLGAGFQP 127
N EA +R +P++P +P +P S WV P G + S P
Sbjct: 670 NAGIEAQDRRESLPTSP---PWTPGASRPPSSLDGWVSPGPWEPGRGSSMSSPPPLPPPP 726
Query: 128 PLGRGGAGRGGAPASLASSARP 149
P+ + R +P + ARP
Sbjct: 727 PMSPSWSERSVSPLRPETEARP 748
Score = 27.7 bits (60), Expect = 6.9
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 16 GGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVRVLPNTAAEATA 75
G ++PG + + SP L+ R+ E P P + R + + H+ + P
Sbjct: 244 GIQAPGGTSQMERSPMLERRHFGEKAPAPQPPSLPDRSPRPQRHI--MSRSPMVERRMMG 301
Query: 76 KRAPV----PSAPLPAARSPRGPQPLSPRSSWVRGMP 108
+R+P P A + +P +SWVR P
Sbjct: 302 QRSPASERRPLGNFTAPPTYTETLSTAPLASWVRSPP 338
>gi|7662302 TBK1 binding protein 1 [Homo sapiens]
Length = 615
Score = 42.0 bits (97), Expect = 4e-04
Identities = 52/186 (27%), Positives = 64/186 (34%), Gaps = 32/186 (17%)
Query: 19 SPGKAFRAQP------SPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVR---VLPNT 69
SP RA P SP Q R+P+ PP PS RR P R V P+
Sbjct: 349 SPSPPARAAPPCPPCQSPVPQRRSPV--PPCPSPQQRRSPASPSCPSPVPQRRSPVPPSC 406
Query: 70 AAEATAKRAPVP-SAPLPAARSPRGPQP----------LSPRSSWVR-GMPGRGGHQRPL 117
+ + +R+PVP S P P R P P P P S V+ G GR +
Sbjct: 407 QSPSPQRRSPVPPSCPAPQPRPPPPPPPGERTLAERAYAKPPSHHVKAGFQGRRSYSELA 466
Query: 118 FSTLGAGFQPPLGRGGAGRGGAPASLASSARPCAAPALPYR---------ERARPAALHW 168
AG PP + A P + S P P R E+ W
Sbjct: 467 EGAAYAGASPPWLQAEAATLPKPRAYGSELYGPGRPLSPRRAFEGIRLRFEKQPSEEDEW 526
Query: 169 RTPASP 174
P SP
Sbjct: 527 AVPTSP 532
Score = 29.6 bits (65), Expect = 1.8
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 140 PASLASSARPCAAPALPYRERARP--AALHWRTPASPSLGSGWFRRRARRPRSC 191
PA A PC +P R P + R+PASPS S +RR+ P SC
Sbjct: 353 PARAAPPCPPCQSPVPQRRSPVPPCPSPQQRRSPASPSCPSPVPQRRSPVPPSC 406
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 42.0 bits (97), Expect = 4e-04
Identities = 38/137 (27%), Positives = 47/137 (34%), Gaps = 21/137 (15%)
Query: 2 STRPPRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLA 61
S+ PP G PG P P + P PP P
Sbjct: 129 SSAPPATPPTSGAPPGSGPGPT--PTPPPAVTSAPPGAPPPTP----------------- 169
Query: 62 PVRVLPNTAAEATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFSTL 121
P +P T +A P + P P +GP P P+ + G P GG P ST
Sbjct: 170 PSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGG--PGLSTP 227
Query: 122 GAGFQPPLGRGGAGRGG 138
G +PP GG RGG
Sbjct: 228 GGHPKPPHRGGGEPRGG 244
Score = 38.9 bits (89), Expect = 0.003
Identities = 41/163 (25%), Positives = 55/163 (33%), Gaps = 14/163 (8%)
Query: 5 PPRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAAR----RGRGEQV---- 56
PP Q Q P + QP P Q + PP P +++ +G G
Sbjct: 64 PPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGS 123
Query: 57 ---RTHLAPVRVLPNTAAEATAKRAPVPSAPLPAARSPRG-PQPLSPRSSWVRGMPGRGG 112
+ AP P + A + P P+ P +P G P P P S P GG
Sbjct: 124 APPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGG 183
Query: 113 HQRPLFSTLGAGFQPPLGRGGAGRGGAPASLASSARPCAAPAL 155
P + G G P G G G G + +P P L
Sbjct: 184 PPPPPAAVPGPGPGPKQGPGPGGPKG--GKMPGGPKPGGGPGL 224
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 41.2 bits (95), Expect = 6e-04
Identities = 53/177 (29%), Positives = 69/177 (38%), Gaps = 26/177 (14%)
Query: 37 PLETPPGPSKAARRG---RGEQVRTHLAPVRVLPNTAAEATAKRAPVPSAPLPAARSPRG 93
P PGP K A RG G++ + P R P AA A R P P+A PA R
Sbjct: 622 PQHAKPGPRKLAERGPQDSGDRAASPAGP-RKSPQEAAAAPGTREPCPAAQEPAPSEDRN 680
Query: 94 PQPLSPRSS------------WVRGMPGRGGHQR--PLFSTLGAGFQPPLGRGGAGRG-G 138
P P+ RS+ V+G+ R + L + PLG A RG
Sbjct: 681 PFPVKLRSTSLSLKYRDGASQEVKGVKRYSAEVRLERSLTVLPKEEKCPLGTAPALRGTR 740
Query: 139 APASLA-SSARP----CAAPALPYRERARPAALHWRTPASPSLGSGWFRRRARRPRS 190
AP+ ARP + P LP + + L PA P G G R + PR+
Sbjct: 741 APSDQGKGKARPPEPLSSKPPLPRKPLLQSFTLP-HQPAPPDAGPG-EREPRKEPRT 795
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 40.8 bits (94), Expect = 8e-04
Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 6 PRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVRV 65
P QAT Q G +P KA A P G Q + P + PPGP+ R+ + PV
Sbjct: 560 PPQATRQTSVSGPAPPKASGAPPG-GQQRQGPPQKPPGPAGPTRQA------SQAGPV-- 610
Query: 66 LPNTAAEATAKRAPVPSAPLPAAR 89
P T T + P PS P PA R
Sbjct: 611 -PRTGPPTT--QQPRPSGPGPAGR 631
Score = 30.8 bits (68), Expect = 0.81
Identities = 45/169 (26%), Positives = 58/169 (34%), Gaps = 34/169 (20%)
Query: 19 SPGKAFRAQ-PSPGLQH--RNPLETPPGPSKAARR---------GRGEQVRTHLAPVRVL 66
SPG+ Q PSPG R + P GP R G G Q + R
Sbjct: 427 SPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPP 486
Query: 67 PNTAAEATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFSTLGAGFQ 126
P + P S PLP P P S G+G RP+
Sbjct: 487 PQGQQHLSGLGPPAGS-PLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPV--------- 536
Query: 127 PPLGRGGAGRGGAPASLASSARPCAAPALPYRERARPAALHWRTPASPS 175
AG GAP +ARP A+P+ P R+ P A + + P+
Sbjct: 537 -------AGGPGAP----PAARPPASPS-PQRQAGPPQATRQTSVSGPA 573
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 40.8 bits (94), Expect = 8e-04
Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 6 PRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVRV 65
P QAT Q G +P KA A P G Q + P + PPGP+ R+ + PV
Sbjct: 560 PPQATRQTSVSGPAPPKASGAPPG-GQQRQGPPQKPPGPAGPTRQA------SQAGPV-- 610
Query: 66 LPNTAAEATAKRAPVPSAPLPAAR 89
P T T + P PS P PA R
Sbjct: 611 -PRTGPPTT--QQPRPSGPGPAGR 631
Score = 30.8 bits (68), Expect = 0.81
Identities = 45/169 (26%), Positives = 58/169 (34%), Gaps = 34/169 (20%)
Query: 19 SPGKAFRAQ-PSPGLQH--RNPLETPPGPSKAARR---------GRGEQVRTHLAPVRVL 66
SPG+ Q PSPG R + P GP R G G Q + R
Sbjct: 427 SPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPP 486
Query: 67 PNTAAEATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFSTLGAGFQ 126
P + P S PLP P P S G+G RP+
Sbjct: 487 PQGQQHLSGLGPPAGS-PLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPV--------- 536
Query: 127 PPLGRGGAGRGGAPASLASSARPCAAPALPYRERARPAALHWRTPASPS 175
AG GAP +ARP A+P+ P R+ P A + + P+
Sbjct: 537 -------AGGPGAP----PAARPPASPS-PQRQAGPPQATRQTSVSGPA 573
>gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo
sapiens]
Length = 261
Score = 40.4 bits (93), Expect = 0.001
Identities = 52/171 (30%), Positives = 59/171 (34%), Gaps = 18/171 (10%)
Query: 21 GKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVR-VLPNTAAEATAKRAP 79
G+ R P GL P G R E H P R P A P
Sbjct: 103 GEHLRRDPEQGL---GPPRKAHGVQGGPCAARAEGGALHGRPGRDARPWRLLSACPSGRP 159
Query: 80 VPSA-PLPAARSPRGP--QPLSPRSSWVRGMPGRGGHQRPLFSTLGAGFQPPLGRGGAGR 136
P PLP P QPL P S R GR G GA PP G AG
Sbjct: 160 RPRPLPLPLMLMLMLPTLQPLPPPGSARRPRRGRAGRG-------GAAPAPPTGSMRAGP 212
Query: 137 GGAPASLASSARPCAAPALPYRERARPAALHWRTPASPSLGSGWFRRRARR 187
G + S A ++ P +PA P E R P + S G+GW RR
Sbjct: 213 GPSSPSAAPTSHPPPSPACPGPEMETIL----RNPPARSPGAGWGSGAGRR 259
>gi|239750586 PREDICTED: hypothetical protein XP_002347439 [Homo
sapiens]
Length = 300
Score = 40.4 bits (93), Expect = 0.001
Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 15 EGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRG-RG--EQVRTHLAPVRVLPNTAA 71
E G+ P + F+ + L PPG +A RRG RG + R AP V + +
Sbjct: 27 EAGRGPRQRFQPPAAASLPRIG--SAPPGGGRALRRGGRGAARRKRKRRAPAPVCHHRGS 84
Query: 72 EATAKRAPVPSAPLPAARSPRGPQPLSP----RSSWVRGMP-GRGGHQRPLFSTLGAGFQ 126
+ K P +P A + + P P P + V G P R +R G +
Sbjct: 85 PGSPKFVSPPRSPGSPAGAAQVPPPFPPVPGLHALLVCGQPRSREWTERVQLPPRGRAWP 144
Query: 127 PPLGRGGAGRGGAPASLASSARPCAAPAL-PYRERARPA 164
PP G G A+ A++A+ AP++ P+ RA P+
Sbjct: 145 PPPFTSGRPVAGVEAAEAAAAQ--RAPSVWPHATRAAPS 181
>gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo
sapiens]
Length = 261
Score = 40.4 bits (93), Expect = 0.001
Identities = 52/171 (30%), Positives = 59/171 (34%), Gaps = 18/171 (10%)
Query: 21 GKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVR-VLPNTAAEATAKRAP 79
G+ R P GL P G R E H P R P A P
Sbjct: 103 GEHLRRDPEQGL---GPPRKAHGVQGGPCAARAEGGALHGRPGRDARPWRLLSACPSGRP 159
Query: 80 VPSA-PLPAARSPRGP--QPLSPRSSWVRGMPGRGGHQRPLFSTLGAGFQPPLGRGGAGR 136
P PLP P QPL P S R GR G GA PP G AG
Sbjct: 160 RPRPLPLPLMLMLMLPTLQPLPPPGSARRPRRGRAGRG-------GAAPAPPTGSMRAGP 212
Query: 137 GGAPASLASSARPCAAPALPYRERARPAALHWRTPASPSLGSGWFRRRARR 187
G + S A ++ P +PA P E R P + S G+GW RR
Sbjct: 213 GPSSPSAAPTSHPPPSPACPGPEMETIL----RNPPARSPGAGWGSGAGRR 259
>gi|239744883 PREDICTED: hypothetical protein XP_002344274 [Homo
sapiens]
Length = 300
Score = 40.4 bits (93), Expect = 0.001
Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 15 EGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRG-RG--EQVRTHLAPVRVLPNTAA 71
E G+ P + F+ + L PPG +A RRG RG + R AP V + +
Sbjct: 27 EAGRGPRQRFQPPAAASLPRIG--SAPPGGGRALRRGGRGAARRKRKRRAPAPVCHHRGS 84
Query: 72 EATAKRAPVPSAPLPAARSPRGPQPLSP----RSSWVRGMP-GRGGHQRPLFSTLGAGFQ 126
+ K P +P A + + P P P + V G P R +R G +
Sbjct: 85 PGSPKFVSPPRSPGSPAGAAQVPPPFPPVPGLHALLVCGQPRSREWTERVQLPPRGRAWP 144
Query: 127 PPLGRGGAGRGGAPASLASSARPCAAPAL-PYRERARPA 164
PP G G A+ A++A+ AP++ P+ RA P+
Sbjct: 145 PPPFTSGRPVAGVEAAEAAAAQ--RAPSVWPHATRAAPS 181
>gi|239750468 PREDICTED: similar to Os05g0242100 [Homo sapiens]
Length = 758
Score = 40.0 bits (92), Expect = 0.001
Identities = 42/134 (31%), Positives = 55/134 (41%), Gaps = 22/134 (16%)
Query: 71 AEATAKRAPV-PSAPLPAARSPRGPQPLSPRSSWVRG----MPGRGGHQRPLFSTLGAGF 125
A +TA +P PSAP AA+ QP+S R RG PGR +R G
Sbjct: 11 APSTAHSSPATPSAP--AAQRALAEQPMSARLGPTRGSQGSAPGRRRGRRQRRHRRGLRA 68
Query: 126 QPPLGRGGAGRGGAPASLASSARPCAAPALPYRERARPAALHWRTPASPSLGSGWFRRRA 185
+ P GG+G A+ A +AR A+ +P+R R R A G W
Sbjct: 69 RRPQRHGGSG----TAAHAGAARQVASGFMPHRRRRRTAP-----------GQPWASGFR 113
Query: 186 RRPRSCCGEAASPG 199
R+ R G A G
Sbjct: 114 RQGRGLSGPGAGSG 127
Score = 32.3 bits (72), Expect = 0.28
Identities = 43/140 (30%), Positives = 55/140 (39%), Gaps = 27/140 (19%)
Query: 37 PLETPPGPSKAAR-----RGRGEQVRTHLAPVRVL-------PNTAAEATAKRAPVPSAP 84
P+ GP++ ++ R RG + R H +R TAA A A R V S
Sbjct: 35 PMSARLGPTRGSQGSAPGRRRGRRQRRHRRGLRARRPQRHGGSGTAAHAGAARQ-VASGF 93
Query: 85 LPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFSTLGAGFQPPLGRGGA--GRGGAPAS 142
+P R R +P W G +G G G GRGGA GR G A
Sbjct: 94 MPHRRRRR----TAPGQPWASGFRRQGR------GLSGPGAGSGRGRGGALIGRAGGGA- 142
Query: 143 LASSARPCAAPALPYRERAR 162
+A+ P P LP R R R
Sbjct: 143 MAAKTSPAMLP-LPPRPRFR 161
>gi|150170699 kinesin family member 26A [Homo sapiens]
Length = 1882
Score = 40.0 bits (92), Expect = 0.001
Identities = 51/166 (30%), Positives = 67/166 (40%), Gaps = 29/166 (17%)
Query: 15 EGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVRVLPNTAAEAT 74
+G ++PG+ RA P G+ +P GP+ A R G + V PV A
Sbjct: 1450 KGREAPGRPPRAVPKLGVPPSSPTH---GPAPACRSGAAKAVGAPKPPVGGGKGRGLVAG 1506
Query: 75 AKRAPVPSAPLPAA----RSPRGP---QPLSPRSS-WVRGMPGRG---GHQRPLFST--- 120
RA PS L A RSP GP +PR+ V GRG G ++ L +
Sbjct: 1507 GSRALGPSVKLSTASVTGRSPGGPVAGPRAAPRAGPSVGAKAGRGTVMGTKQALRAAHSR 1566
Query: 121 ---LGAGFQPPLGRGGAGRGGAPASLASSA-------RPCAAPALP 156
L A P GRGG+ G A + + RP PALP
Sbjct: 1567 VHELSASGAP--GRGGSSWGSADSDSGHDSGVNVGEERPPTGPALP 1610
>gi|239756899 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 39.3 bits (90), Expect = 0.002
Identities = 50/168 (29%), Positives = 55/168 (32%), Gaps = 30/168 (17%)
Query: 27 QPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVRVLPNTAAEATAKRAPVPSAPLP 86
QP L H P+ P P ARR LP A +R AP P
Sbjct: 24 QPETRLDHNRPMSRPIFPVPLARRTE-------------LPGAAPAGEPRRGDPGVAPSP 70
Query: 87 AARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFSTLGAGFQPPLGRGGAGRGGAPA----- 141
A P S RG G +RP T GG GR GA
Sbjct: 71 PA----------PEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM 120
Query: 142 SLASSARPCAAPALPYR-ERARPAALHWR-TPASPSLGSGWFRRRARR 187
L SAR AP P R ER P R P + + GS R R R
Sbjct: 121 GLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLR 168
>gi|113427491 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 39.3 bits (90), Expect = 0.002
Identities = 50/168 (29%), Positives = 55/168 (32%), Gaps = 30/168 (17%)
Query: 27 QPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVRVLPNTAAEATAKRAPVPSAPLP 86
QP L H P+ P P ARR LP A +R AP P
Sbjct: 24 QPETRLDHNRPMSRPIFPVPLARRTE-------------LPGAAPAGEPRRGDPGVAPSP 70
Query: 87 AARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFSTLGAGFQPPLGRGGAGRGGAPA----- 141
A P S RG G +RP T GG GR GA
Sbjct: 71 PA----------PEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM 120
Query: 142 SLASSARPCAAPALPYR-ERARPAALHWR-TPASPSLGSGWFRRRARR 187
L SAR AP P R ER P R P + + GS R R R
Sbjct: 121 GLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLR 168
>gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo
sapiens]
Length = 408
Score = 39.3 bits (90), Expect = 0.002
Identities = 45/158 (28%), Positives = 61/158 (38%), Gaps = 15/158 (9%)
Query: 27 QPSPGLQHRNPL---ETPPGPSKAARRGRGEQVRTHLAPVRVLPNTAAEATAKRAPVPSA 83
QP GL ++ L P PS+ A + + + + + A + AP A
Sbjct: 6 QPVNGLVTKSQLCLWSREPVPSRQAAPSKRLESVSFPGAHEMSSRSLARPVSPSAPRSIA 65
Query: 84 PL-PAARSPRGPQPLSPRSSWV---RGMPGRGGHQRPLFSTLGAGFQPPLGRGGAGRGGA 139
P P AR PR +PL+PR+ R +P +G + PL S G RG G
Sbjct: 66 PARPGARPPRPGRPLAPRARQPVPHRAVPRQGSLREPLPSRRGR-------RGPPGHAPP 118
Query: 140 PASLASSARPCAAPALPYRERAR-PAALHWRTPASPSL 176
SL P+ R RAR P L PA L
Sbjct: 119 SPSLRRRGARALQPSAAARARARVPRGLRLHRPAHRGL 156
>gi|239745902 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 39.3 bits (90), Expect = 0.002
Identities = 50/168 (29%), Positives = 55/168 (32%), Gaps = 30/168 (17%)
Query: 27 QPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVRVLPNTAAEATAKRAPVPSAPLP 86
QP L H P+ P P ARR LP A +R AP P
Sbjct: 24 QPETRLDHNRPMSRPIFPVPLARRTE-------------LPGAAPAGEPRRGDPGVAPSP 70
Query: 87 AARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFSTLGAGFQPPLGRGGAGRGGAPA----- 141
A P S RG G +RP T GG GR GA
Sbjct: 71 PA----------PEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM 120
Query: 142 SLASSARPCAAPALPYR-ERARPAALHWR-TPASPSLGSGWFRRRARR 187
L SAR AP P R ER P R P + + GS R R R
Sbjct: 121 GLPDSARRPRAPRTPLRPERPAPGVPGGRVAPCTCTSGSPSPRPRRLR 168
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,136,839
Number of Sequences: 37866
Number of extensions: 837253
Number of successful extensions: 7391
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 983
Number of HSP's that attempted gapping in prelim test: 5853
Number of HSP's gapped (non-prelim): 2236
length of query: 201
length of database: 18,247,518
effective HSP length: 97
effective length of query: 104
effective length of database: 14,574,516
effective search space: 1515749664
effective search space used: 1515749664
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.