Guide to the Human Genome
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Name: LOC728597 Sequence: fasta or formatted (530aa) NCBI GI: 239753110
Description:

PREDICTED: doublecortin domain-containing protein ENSP00000382097-like

Referenced in:

Neurons

Other entries for this name:
alt prot [510aa] PREDICTED: doublecortin domain-containing protein ENSP00000382097...
alt prot [714aa] PREDICTED: doublecortin domain-containing protein ENSP00000382097...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         46           2
 C cysteine            2.1         11           2
 D aspartate           4.0         21           1
 E glutamate           5.7         30           2
 F phenylalanine       3.4         18           1
 G glycine             8.3         44           2
 H histidine           3.2         17           1
 I isoleucine          3.4         18           3
 K lysine              6.2         33           3
 L leucine             8.3         44           2
 M methionine          0.6          3           1
 N asparagine          1.7          9           1
 P proline             8.1         43           2
 Q glutamine           3.0         16           1
 R arginine            8.3         44           3
 S serine              6.6         35           4
 T threonine           4.9         26           2
 V valine              8.1         43           3
 W tryptophan          2.6         14           1
 Y tyrosine            2.8         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: doublecortin domain-containing protein E... 
LOC728597             0.714   PREDICTED: doublecortin domain-containing protein E...
LOC728597             0.599   PREDICTED: doublecortin domain-containing protein E...
DCDC2                 0.149   doublecortin domain containing 2 
DCDC2B                0.120   doublecortin domain containing 2B 
DCLK2                 0.045   doublecortin-like kinase 2 isoform b 
DCLK2                 0.045   doublecortin-like kinase 2 isoform a 
DCLK1                 0.044   doublecortin-like kinase 1 
DCX                   0.043   doublecortin isoform c 
DCX                   0.043   doublecortin isoform b 
DCX                   0.043   doublecortin isoform c 
DCX                   0.043   doublecortin isoform a 
RP1L1                 0.037   retinitis pigmentosa 1-like 1 
RP1                   0.034   retinitis pigmentosa RP1 protein 
NEFH                  0.013   neurofilament, heavy polypeptide 200kDa 
FAM179B               0.007   hypothetical protein LOC23116 
ST6GALNAC1            0.007   sialyltransferase 7A 
MAP7D1                0.007   MAP7 domain containing 1 
C1orf56               0.006   hypothetical protein LOC54964 
DCDC5                 0.006   PREDICTED: doublecortin domain containing 5 
DCDC5                 0.006   PREDICTED: doublecortin domain containing 5 
DCDC5                 0.006   PREDICTED: doublecortin domain containing 5 
TOMM40                0.006   translocase of outer mitochondrial membrane 40 [Hom...
TOMM40                0.006   translocase of outer mitochondrial membrane 40 [Hom...
TOMM40                0.006   translocase of outer mitochondrial membrane 40 
NFRKB                 0.006   nuclear factor related to kappaB binding protein is...
NFRKB                 0.006   nuclear factor related to kappaB binding protein iso...
CDC40                 0.006   cell division cycle 40 homolog 
FOXO6                 0.006   PREDICTED: forkhead box protein O6 
SERTAD1               0.006   SERTA domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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