Guide to the Human Genome
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Name: DCDC2B Sequence: fasta or formatted (349aa) NCBI GI: 150456471
Description:

doublecortin domain containing 2B

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         36           2
 C cysteine            2.0          7           1
 D aspartate           3.7         13           2
 E glutamate           5.4         19           2
 F phenylalanine       3.2         11           2
 G glycine             8.6         30           2
 H histidine           3.2         11           1
 I isoleucine          2.0          7           1
 K lysine              4.9         17           1
 L leucine            10.0         35           2
 M methionine          0.6          2           1
 N asparagine          1.4          5           1
 P proline            10.3         36           2
 Q glutamine           6.0         21           2
 R arginine            6.3         22           2
 S serine              6.9         24           1
 T threonine           4.6         16           1
 V valine              7.2         25           3
 W tryptophan          0.6          2           1
 Y tyrosine            2.9         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   doublecortin domain containing 2B 
DCDC2                 0.248   doublecortin domain containing 2 
LOC728597             0.187   PREDICTED: doublecortin domain-containing protein E...
LOC728597             0.183   PREDICTED: doublecortin domain-containing protein E...
LOC728597             0.183   PREDICTED: doublecortin domain-containing protein E...
DCLK2                 0.078   doublecortin-like kinase 2 isoform b 
DCLK2                 0.078   doublecortin-like kinase 2 isoform a 
DCLK1                 0.065   doublecortin-like kinase 1 
DCX                   0.065   doublecortin isoform c 
DCX                   0.065   doublecortin isoform c 
DCX                   0.065   doublecortin isoform a 
DCX                   0.064   doublecortin isoform b 
RP1                   0.058   retinitis pigmentosa RP1 protein 
RP1L1                 0.033   retinitis pigmentosa 1-like 1 
ZBTB32                0.023   zinc finger and BTB domain containing 32 
VCX                   0.022   variable charge, X chromosome 
VCX3A                 0.020   variable charge, X-linked 3A 
VCX3B                 0.020   variable charge, X-linked 3B 
LOC100293478          0.017   PREDICTED: similar to pleckstrin homology domain co...
PLEKHM1               0.015   pleckstrin homology domain containing, family M (wit...
TBC1D10A              0.015   TBC1 domain family, member 10A 
SCAF1                 0.012   SR-related CTD-associated factor 1 
WDFY3                 0.012   WD repeat and FYVE domain containing 3 isoform 1 [Ho...
MNT                   0.012   MAX binding protein 
ZNF318                0.012   zinc finger protein 318 
LOC100291232          0.012   PREDICTED: hypothetical protein XP_002347841 
LOC100134008          0.010   PREDICTED: similar to DEAD/H (Asp-Glu-Ala-Asp/His) ...
ACD                   0.010   adrenocortical dysplasia homolog isoform 3 
ACD                   0.010   adrenocortical dysplasia homolog isoform 1 
ACD                   0.010   adrenocortical dysplasia homolog isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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