Guide to the Human Genome
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Name: RP1 Sequence: fasta or formatted (2156aa) NCBI GI: 5454016
Description:

retinitis pigmentosa RP1 protein

Referenced in:

Crystallins and Other Eye Proteins
Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8        103           2
 C cysteine            2.3         50           1
 D aspartate           5.7        122           2
 E glutamate           8.3        180           3
 F phenylalanine       3.5         76           2
 G glycine             4.9        105           2
 H histidine           2.4         52           2
 I isoleucine          5.3        114           2
 K lysine              7.2        155           5
 L leucine             7.9        171           3
 M methionine          2.1         45           2
 N asparagine          6.9        149           3
 P proline             4.6        100           3
 Q glutamine           4.2         91           2
 R arginine            4.3         92           3
 S serine             11.5        247           5
 T threonine           5.8        125           3
 V valine              5.6        121           3
 W tryptophan          0.4          9           1
 Y tyrosine            2.3         49           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   retinitis pigmentosa RP1 protein 
RP1L1                 0.034   retinitis pigmentosa 1-like 1 
DCX                   0.017   doublecortin isoform c 
DCX                   0.017   doublecortin isoform b 
DCX                   0.017   doublecortin isoform c 
DCX                   0.017   doublecortin isoform a 
DCLK2                 0.016   doublecortin-like kinase 2 isoform a 
DCLK2                 0.016   doublecortin-like kinase 2 isoform b 
DCLK1                 0.015   doublecortin-like kinase 1 
DCDC2                 0.013   doublecortin domain containing 2 
DCDC2B                0.009   doublecortin domain containing 2B 
LOC728597             0.009   PREDICTED: doublecortin domain-containing protein E...
LOC728597             0.009   PREDICTED: doublecortin domain-containing protein E...
LOC728597             0.009   PREDICTED: doublecortin domain-containing protein E...
CENPE                 0.004   centromere protein E 
KRT40                 0.003   type I hair keratin KA36 
DSPP                  0.003   dentin sialophosphoprotein preproprotein 
MYH11                 0.003   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.003   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.003   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.003   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
SDPR                  0.003   serum deprivation response protein 
ZDBF2                 0.003   zinc finger, DBF-type containing 2 
MYST3                 0.003   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.003   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.003   MYST histone acetyltransferase (monocytic leukemia)...
ZFYVE9                0.003   zinc finger, FYVE domain containing 9 isoform 1 [Hom...
ZFYVE9                0.003   zinc finger, FYVE domain containing 9 isoform 3 [Hom...
ZFYVE9                0.003   zinc finger, FYVE domain containing 9 isoform 2 [Homo...
LOC100288966          0.003   PREDICTED: hypothetical protein XP_002343915 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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