RP1 32637

Name: RP1	Sequence: fasta or formatted (2156aa)		NCBI GI: 5454016
Description: retinitis pigmentosa RP1 protein		Referenced in: Crystallins and Other Eye Proteins Neurons
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.8 103 2 C cysteine 2.3 50 1 D aspartate 5.7 122 2 E glutamate 8.3 180 3 F phenylalanine 3.5 76 2 G glycine 4.9 105 2 H histidine 2.4 52 2 I isoleucine 5.3 114 2 K lysine 7.2 155 5 L leucine 7.9 171 3 M methionine 2.1 45 2 N asparagine 6.9 149 3 P proline 4.6 100 3 Q glutamine 4.2 91 2 R arginine 4.3 92 3 S serine 11.5 247 5 T threonine 5.8 125 3 V valine 5.6 121 3 W tryptophan 0.4 9 1 Y tyrosine 2.3 49 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 retinitis pigmentosa RP1 protein RP1L1 0.034 retinitis pigmentosa 1-like 1 DCX 0.017 doublecortin isoform c DCX 0.017 doublecortin isoform b DCX 0.017 doublecortin isoform c DCX 0.017 doublecortin isoform a DCLK2 0.016 doublecortin-like kinase 2 isoform a DCLK2 0.016 doublecortin-like kinase 2 isoform b DCLK1 0.015 doublecortin-like kinase 1 DCDC2 0.013 doublecortin domain containing 2 DCDC2B 0.009 doublecortin domain containing 2B LOC728597 0.009 PREDICTED: doublecortin domain-containing protein E... LOC728597 0.009 PREDICTED: doublecortin domain-containing protein E... LOC728597 0.009 PREDICTED: doublecortin domain-containing protein E... CENPE 0.004 centromere protein E KRT40 0.003 type I hair keratin KA36 DSPP 0.003 dentin sialophosphoprotein preproprotein MYH11 0.003 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... MYH11 0.003 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... MYH11 0.003 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... MYH11 0.003 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... SDPR 0.003 serum deprivation response protein ZDBF2 0.003 zinc finger, DBF-type containing 2 MYST3 0.003 MYST histone acetyltransferase (monocytic leukemia)... MYST3 0.003 MYST histone acetyltransferase (monocytic leukemia)... MYST3 0.003 MYST histone acetyltransferase (monocytic leukemia)... ZFYVE9 0.003 zinc finger, FYVE domain containing 9 isoform 1 [Hom... ZFYVE9 0.003 zinc finger, FYVE domain containing 9 isoform 3 [Hom... ZFYVE9 0.003 zinc finger, FYVE domain containing 9 isoform 2 [Homo... LOC100288966 0.003 PREDICTED: hypothetical protein XP_002343915 isofor... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.