Guide to the Human Genome
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Name: LOC100291490 Sequence: fasta or formatted (265aa) NCBI GI: 239749375
Description:

PREDICTED: hypothetical protein XP_002347018

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.5         33           6
 C cysteine            0.8          2           1
 D aspartate           1.5          4           1
 E glutamate           4.5         12           2
 F phenylalanine       1.5          4           1
 G glycine            13.2         35           3
 H histidine           1.1          3           1
 I isoleucine          1.5          4           1
 K lysine              4.5         12           1
 L leucine             8.3         22           3
 M methionine          0.8          2           1
 N asparagine          1.1          3           1
 P proline            10.9         29           2
 Q glutamine           2.6          7           1
 R arginine           10.6         28           2
 S serine             12.5         33           2
 T threonine           6.8         18           3
 V valine              3.4          9           2
 W tryptophan          1.1          3           2
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347018 
LOC100287037          1.000   PREDICTED: hypothetical protein XP_002342879 
LOC100293371          0.994   PREDICTED: hypothetical protein 
LOC100292172          0.047   PREDICTED: hypothetical protein 
LOC100289763          0.047   PREDICTED: hypothetical protein XP_002347867 
LOC100289681          0.047   PREDICTED: hypothetical protein XP_002343623 
COL1A1                0.043   alpha 1 type I collagen preproprotein 
SYNJ1                 0.042   synaptojanin 1 isoform a 
SYNJ1                 0.042   synaptojanin 1 isoform b 
NACA                  0.038   nascent polypeptide-associated complex alpha subuni...
LOC100291624          0.038   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.038   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.038   PREDICTED: hypothetical protein XP_002342583 
HOXD11                0.038   homeobox D11 
SHC2                  0.036   SHC (Src homology 2 domain containing) transforming...
COL3A1                0.034   collagen type III alpha 1 preproprotein 
LOC338758             0.034   PREDICTED: hypothetical protein 
LOC338758             0.034   PREDICTED: hypothetical protein 
FOXF2                 0.034   forkhead box F2 
THRAP3                0.034   thyroid hormone receptor associated protein 3 [Homo...
LOC338758             0.034   PREDICTED: hypothetical protein 
OTX1                  0.032   orthodenticle homeobox 1 
SCARF2                0.032   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.032   scavenger receptor class F, member 2 isoform 2 [Homo...
CTAGE1                0.030   cutaneous T-cell lymphoma-associated antigen 1 isofo...
LOC729570             0.030   PREDICTED: hypothetical protein 
LOC729570             0.030   PREDICTED: hypothetical protein 
LOC729570             0.030   PREDICTED: hypothetical protein 
PAPPA                 0.030   pregnancy-associated plasma protein A preproprotein ...
LOC643355             0.030   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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