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Search of human proteins with 239749251
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
(460 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 957 0.0
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 957 0.0
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 957 0.0
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 822 0.0
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 64 2e-10
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 62 1e-09
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 60 5e-09
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 60 5e-09
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 60 5e-09
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 59 9e-09
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 59 9e-09
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 59 9e-09
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 59 1e-08
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 58 2e-08
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 58 2e-08
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 58 2e-08
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 58 2e-08
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 58 2e-08
gi|22027541 programmed cell death 7 [Homo sapiens] 57 4e-08
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 57 5e-08
gi|163965366 nascent polypeptide-associated complex alpha subuni... 57 5e-08
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 55 1e-07
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 55 2e-07
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 55 2e-07
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 55 2e-07
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 55 2e-07
gi|19924099 synapsin I isoform Ia [Homo sapiens] 55 2e-07
gi|19924097 synapsin I isoform Ib [Homo sapiens] 55 2e-07
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 55 2e-07
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 55 2e-07
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 957 bits (2475), Expect = 0.0
Identities = 460/460 (100%), Positives = 460/460 (100%)
Query: 1 MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR 60
MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR
Sbjct: 1 MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR 60
Query: 61 WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN 120
WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN
Sbjct: 61 WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN 120
Query: 121 RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK 180
RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK
Sbjct: 121 RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK 180
Query: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGP 240
PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGP
Sbjct: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGP 240
Query: 241 AQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCD 300
AQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCD
Sbjct: 241 AQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCD 300
Query: 301 RAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRA 360
RAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRA
Sbjct: 301 RAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRA 360
Query: 361 GSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASGPKMVADQTSG 420
GSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASGPKMVADQTSG
Sbjct: 361 GSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASGPKMVADQTSG 420
Query: 421 ISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL 460
ISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL
Sbjct: 421 ISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL 460
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 957 bits (2475), Expect = 0.0
Identities = 460/460 (100%), Positives = 460/460 (100%)
Query: 1 MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR 60
MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR
Sbjct: 1 MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR 60
Query: 61 WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN 120
WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN
Sbjct: 61 WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN 120
Query: 121 RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK 180
RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK
Sbjct: 121 RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK 180
Query: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGP 240
PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGP
Sbjct: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGP 240
Query: 241 AQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCD 300
AQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCD
Sbjct: 241 AQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCD 300
Query: 301 RAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRA 360
RAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRA
Sbjct: 301 RAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRA 360
Query: 361 GSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASGPKMVADQTSG 420
GSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASGPKMVADQTSG
Sbjct: 361 GSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASGPKMVADQTSG 420
Query: 421 ISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL 460
ISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL
Sbjct: 421 ISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL 460
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 957 bits (2475), Expect = 0.0
Identities = 460/460 (100%), Positives = 460/460 (100%)
Query: 1 MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR 60
MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR
Sbjct: 1 MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR 60
Query: 61 WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN 120
WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN
Sbjct: 61 WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN 120
Query: 121 RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK 180
RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK
Sbjct: 121 RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK 180
Query: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGP 240
PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGP
Sbjct: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGP 240
Query: 241 AQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCD 300
AQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCD
Sbjct: 241 AQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCD 300
Query: 301 RAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRA 360
RAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRA
Sbjct: 301 RAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRA 360
Query: 361 GSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASGPKMVADQTSG 420
GSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASGPKMVADQTSG
Sbjct: 361 GSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASGPKMVADQTSG 420
Query: 421 ISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL 460
ISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL
Sbjct: 421 ISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL 460
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 822 bits (2124), Expect = 0.0
Identities = 415/480 (86%), Positives = 420/480 (87%), Gaps = 20/480 (4%)
Query: 1 MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR 60
MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR
Sbjct: 1 MESRQQLLQLVGADITGSPPSIKIFKQLQVLVGTAKYTAETLGPAATTQQVREAADIIAR 60
Query: 61 WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN 120
WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN
Sbjct: 61 WSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKN 120
Query: 121 RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK 180
RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK
Sbjct: 121 RGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNK 180
Query: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREG----PRGRAESR 236
PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPAR EG PR R+ +
Sbjct: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAA 240
Query: 237 GSGPAQ-PAHLPLPGPAHSPAPPAPELREG------RAPGSTAGRRP----RPREPQAAE 285
PA P L + + P P G RAPG GR P R P A
Sbjct: 241 RPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRAR 300
Query: 286 E-----SGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG 340
+ SGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG
Sbjct: 301 QDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHG 360
Query: 341 PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT 400
PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT
Sbjct: 361 PASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTT 420
Query: 401 RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL 460
RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL
Sbjct: 421 RTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDRQVVPLWFFRRCLPGGILTLSL 480
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 64.3 bits (155), Expect = 2e-10
Identities = 89/323 (27%), Positives = 116/323 (35%), Gaps = 46/323 (14%)
Query: 154 PPRPPPNLQE--GGQRAIFQRPPVYLGNKPTPPRQEGS---FGGRPKSQPPLPQ----ET 204
PP P P L E GG P L +P P E S PKS LPQ E+
Sbjct: 363 PPAPTPLLAERHGGSPQPLATTP--LSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSES 420
Query: 205 AAPAPQP---------GPTAPPARPPAYESRE---GPRGRAESRGSGPAQPAHLPLP--- 249
+ P+PQP P +P P RE P + S G +H P
Sbjct: 421 SPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRR 480
Query: 250 -GPAHSPAPPAPELREGRAP---GSTAGRRPRPREPQAAEESGCATVGLRRGDC---DRA 302
G + SPA R P G + R P+ R ++A+ G + RRG R
Sbjct: 481 MGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRP 540
Query: 303 GSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPAS-------PPGRRHDEEVGA 355
G S+ T G R R RR R G + PA P RR
Sbjct: 541 GWSRSRNTQRRG-RSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTP 599
Query: 356 AVLRAGSGEGSRRGLQLTPPPRR----VHGALQRFGGGRN-LKSNWMSTTRTPRRSGASG 410
R+ S +RRG + P R ++R R+ + + S +RTP R G S
Sbjct: 600 TRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSR 659
Query: 411 PKMVADQTSGISRPPTAGIGTSR 433
+ A + SR P G SR
Sbjct: 660 SRTPARRGRSRSRTPARRSGRSR 682
Score = 51.2 bits (121), Expect = 2e-06
Identities = 73/276 (26%), Positives = 103/276 (37%), Gaps = 39/276 (14%)
Query: 180 KPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAP----PARPPAYESREGPRGRAES 235
+P+P + S G P + PL E +PQP T P P PP+ S R
Sbjct: 349 RPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDR----- 403
Query: 236 RGSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRP-------REPQAAEESG 288
S P P LP + S +PP+P+ + S++ P+P RE ++ S
Sbjct: 404 --SPPKSPEKLPQSSSSES-SPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSK 460
Query: 289 CATVGLRRGD-------CDRAGSSQPPATSGNG-ERCRFCRRR---RRRGGGGEGEGTHA 337
+ G + D R G S+ PAT+ G R R +R R R +
Sbjct: 461 NRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQ 520
Query: 338 THGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWM 397
G + P RR + S RRG + R H R+ +
Sbjct: 521 RWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSH--------SRSPATRGR 572
Query: 398 STTRTPRRSGASGPKMVADQTSGISRPPTAGIGTSR 433
S +RTP R G S + A + S SR PT SR
Sbjct: 573 SRSRTPARRGRSRSRTPARRRSR-SRTPTRRRSRSR 607
Score = 48.5 bits (114), Expect = 1e-05
Identities = 80/310 (25%), Positives = 106/310 (34%), Gaps = 61/310 (19%)
Query: 155 PRPPPNLQEGGQ----------RAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQET 204
PR P Q G RA+ +R +K P EGS + P T
Sbjct: 1608 PRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRT 1667
Query: 205 A------APAPQPGPTAPPARPPAYESREGPRG-----RAESRGSGPAQPAHLPLPGPAH 253
A +P P+ PP R + S E R R+ S S P + P P
Sbjct: 1668 ARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTP-PRHRR 1726
Query: 254 SPAPPAPE-------LREGRAPGS----TAGRR-----PRPREPQAAEESGCATVGLRRG 297
SP+ +PE R R+ S T RR P+PR Q +
Sbjct: 1727 SPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTR 1786
Query: 298 DCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAV 357
DR+GSSQ + R R RRRRGG G + A + RR
Sbjct: 1787 RRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRR--------- 1837
Query: 358 LRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASGP----KM 413
RRG TPP R + R +S ++ T RRS + P +
Sbjct: 1838 ---------RRGRSRTPPTSRKR-SRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRR 1887
Query: 414 VADQTSGISR 423
+TS +SR
Sbjct: 1888 SRSRTSPVSR 1897
Score = 34.3 bits (77), Expect = 0.24
Identities = 76/357 (21%), Positives = 119/357 (33%), Gaps = 67/357 (18%)
Query: 93 AKGSVPSEGRA-TPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLL 151
++ P GR+ + L G H R + RG S +S+ +K + R+ R++ + +
Sbjct: 692 SRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSE--RKNKSRTSQRRSRSNSSPEM 749
Query: 152 ELP------------PRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPP 199
+ PR + +R++ P TPPR+ S +PK+
Sbjct: 750 KKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRRSRSGSSQPKA--- 806
Query: 200 LPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPA 259
+SR PR S P Q + P +HS + P
Sbjct: 807 ------------------------KSRTPPRRSRSSSSPPPKQKSKTP-SRQSHSSSSPH 841
Query: 260 PELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGER--C 317
P+++ G P R+ PQA E+S V +R C + S P S R C
Sbjct: 842 PKVKSGTPP-----RQGSITSPQANEQS----VTPQRRSCFES-SPDPELKSRTPSRHSC 891
Query: 318 RFCRRRRRRGGGGEGEGTHATHGP-------ASPPGRRHDEEVGAAVLRAGSGEGSRRGL 370
R + + + P SP R H + R S RR
Sbjct: 892 SGSSPPRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTSRTTPRRSR 951
Query: 371 QLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASG-----PKMVADQTSGIS 422
++P L R+ + + TP R SG PK+ A G S
Sbjct: 952 SVSPCSNVESRLLPRYSHSGSSSPDTKVKPETPPRQSHSGSISPYPKVKAQTPPGPS 1008
Score = 34.3 bits (77), Expect = 0.24
Identities = 41/177 (23%), Positives = 61/177 (34%), Gaps = 15/177 (8%)
Query: 91 PVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALL 150
P K +V EGR PP P P R + S+ +S + S + +
Sbjct: 2584 PAPKEAV-REGR--PPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2640
Query: 151 LELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRP-------KSQPPLPQE 203
P+ + G +A+ P KP P + +P +S P E
Sbjct: 2641 SSSSSSSSPSPAKPGPQAL---PKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVE 2697
Query: 204 TAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAP 260
P+PQP P + SR G RG +SR + P P P + +P
Sbjct: 2698 RRRPSPQPSPRDQQSSSSERGSRRGQRG--DSRSPSHKRRRETPSPRPMRHRSSRSP 2752
Score = 33.5 bits (75), Expect = 0.42
Identities = 66/286 (23%), Positives = 100/286 (34%), Gaps = 43/286 (15%)
Query: 178 GNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRG 237
G P+P G P S+P T P+ T P+ P YE ++ + + E
Sbjct: 293 GRSPSPASGRRGEGDAPFSEPGTTS-TQRPSSPETATKQPSSP--YEDKD--KDKKEKSA 347
Query: 238 SGPAQPAHLPLPGPAHSPAPPAPEL--REGRAP------------------GSTAGRRPR 277
+ P+ GP P P P L R G +P S R
Sbjct: 348 TRPSPSPERSSTGP--EPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSP 405
Query: 278 PREPQAAEESGCA---------TVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGG 328
P+ P+ +S + T R PA + E + R G
Sbjct: 406 PKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHG 465
Query: 329 GGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPR-RVHGALQRFG 387
+ + +H +H P+ GR A R+ S ++RG + P+ R + QR+G
Sbjct: 466 RAKRDKSH-SHTPSRRMGRSRSPAT-AKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWG 523
Query: 388 GGRNLKSNWMSTTRTPRRSGASGPKMVADQTSGISRPPTAGIGTSR 433
R+ + S R+P+R G S + Q G SR G SR
Sbjct: 524 RSRSPQRRGRS--RSPQRPGWSRSRNT--QRRGRSRSARRGRSHSR 565
Score = 33.1 bits (74), Expect = 0.54
Identities = 45/224 (20%), Positives = 74/224 (33%), Gaps = 19/224 (8%)
Query: 197 QPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSG-PAQPAHLPLPGPAHSP 255
QP + +++ + ++ + + S ++S GS P QP P+ +P
Sbjct: 2525 QPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTP 2584
Query: 256 APPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGE 315
AP +REGR P T +R R ++ S ++ + SS ++S +
Sbjct: 2585 APKEA-VREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2643
Query: 316 RCRFCRRRRRRGGGGEGEGTHATHGPAS----PPGRRHDEEVGAAVLRAGSGEG------ 365
+ G A PAS PPG R +
Sbjct: 2644 SSSSSPSPAK-------PGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPV 2696
Query: 366 SRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGAS 409
RR P PR + G R + + S + RR S
Sbjct: 2697 ERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSHKRRRETPS 2740
Score = 31.6 bits (70), Expect = 1.6
Identities = 37/177 (20%), Positives = 53/177 (29%), Gaps = 23/177 (12%)
Query: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSG- 239
PTP +E GRP P ++ + + ++ + + S + S S
Sbjct: 2582 PTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2641
Query: 240 ---------PAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCA 290
PA+P LP PA PP PG R PR + +
Sbjct: 2642 SSSSSSSPSPAKPGPQALPKPASPKKPP---------PGERRSRSPRKPIDSLRDSRSLS 2692
Query: 291 TVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGR 347
+ R R S QP RR +RG P+ P R
Sbjct: 2693 YSPVER----RRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSHKRRRETPSPRPMR 2745
Score = 29.6 bits (65), Expect = 6.0
Identities = 64/262 (24%), Positives = 91/262 (34%), Gaps = 32/262 (12%)
Query: 156 RPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTA 215
RPPP++ G A + P + + R +P +AA A
Sbjct: 2194 RPPPSMSAAGLAARMSQVPAPVPLMSLRTAPAANLASR------IPAASAA-AMNLASAR 2246
Query: 216 PPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRR 275
PA P A A+SR PA A + L P + AP A L + R P + A
Sbjct: 2247 TPAIPTAVNL-------ADSRT--PAAAAAMNLASPRTAVAPSAVNLADPRTPTAPAVNL 2297
Query: 276 PRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGT 335
R P A A + L GS PP + R + G
Sbjct: 2298 AGARTPAA-----LAALSL-------TGSGTPPTAANYPSSSRTPQAPASANLVGP-RSA 2344
Query: 336 HATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSN 395
HAT P + G R + A L + + G LT PR A +R G +
Sbjct: 2345 HAT-APVNIAGSRTAAALAPASLTSARMAPALSGANLT-SPRVPLSAYERVSGRTSPPLL 2402
Query: 396 WMSTTRTPRRSGASGPKMVADQ 417
+ +RTP S S +M +++
Sbjct: 2403 DRARSRTP-PSAPSQSRMTSER 2423
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 62.0 bits (149), Expect = 1e-09
Identities = 48/135 (35%), Positives = 52/135 (38%), Gaps = 29/135 (21%)
Query: 153 LPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQP- 211
LPP PPP+ GG + RPP+ GNK GR PP+P A P P P
Sbjct: 313 LPPPPPPS--RGGNQ--LPRPPIVGGNK-----------GRSGPLPPVPLGIAPPPPTPR 357
Query: 212 -----GPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLP--------GPAHSPAPP 258
G PP PP R GP GP P P P GPA P PP
Sbjct: 358 GPPPPGRGGPPPPPPPATGRSGPLPPPPPGAGGPPMPPPPPPPPPPPSSGNGPAPPPLPP 417
Query: 259 APELREGRAPGSTAG 273
A G APG G
Sbjct: 418 ALVPAGGLAPGGGRG 432
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 59.7 bits (143), Expect = 5e-09
Identities = 92/343 (26%), Positives = 116/343 (33%), Gaps = 59/343 (17%)
Query: 69 NPKRSGDMGKYHAHGH---LRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSA 125
NP G G A+G AP FP A+G +G PP P P ++G +
Sbjct: 387 NPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTG 446
Query: 126 GTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPR 185
+ G + + P P +EG + A + P L P PP
Sbjct: 447 AKGEPGP------------------VGVQGPPGPAGEEGKRGARGEPGPTGL---PGPPG 485
Query: 186 QEGSFGGR--PKSQPPL-PQETAAPAPQPGPTAPPARP-----PAYESREGPRGRAESRG 237
+ G G R P + P+ A PGP P P P G +G S G
Sbjct: 486 ERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPG 545
Query: 238 SGPAQPAHLPLPGPAHS---PAPPAPELREGRA-PGSTAGRRPRPREPQAAEESGC---- 289
S P PGPA P PP P G+A G + EP A E G
Sbjct: 546 S-PGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPP 604
Query: 290 ATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGR-- 347
VG G AG+ PP +G R G G GPA PPG
Sbjct: 605 GAVG-PAGKDGEAGAQGPPGPAGPA-------GERGEQGPAGSPGFQGLPGPAGPPGEAG 656
Query: 348 RHDEEVGAAVLRAGSGEGSR--------RGLQLTPPPRRVHGA 382
+ E+ L A G+R RG+Q P P GA
Sbjct: 657 KPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGA 699
Score = 50.1 bits (118), Expect = 4e-06
Identities = 86/338 (25%), Positives = 106/338 (31%), Gaps = 78/338 (23%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPH-----PGDHHPRHRKN-RGP 123
P G++G A G + P A G + GR PP P PG P ++ +GP
Sbjct: 850 PGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGP 909
Query: 124 SAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTP 183
T G+ + PP PP E G P P P
Sbjct: 910 RGETGPAGRPGEVG----------------PPGPPGPAGEKGSPGA--DGPAGAPGTPGP 951
Query: 184 PRQEGSFG--GRPKSQ-----PPLPQETAAPAPQ-----------PGPTAPP--ARPPAY 223
G G G P + P LP + P Q PGP PP A PP
Sbjct: 952 QGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGE 1011
Query: 224 ESREGPRGRAESRG-------------SGPAQPAHLP----LPGPA-----------HSP 255
REG G S G +GPA P P PGP P
Sbjct: 1012 SGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGP 1071
Query: 256 APPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGE 315
A PA + A G + PR + + E+ G RG G PP + G
Sbjct: 1072 AGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKG-HRGFSGLQGPPGPPGSPGEQG 1130
Query: 316 RCRFCRRRRRRGGGGEG-----EGTHATHGPASPPGRR 348
RG G +G + GP PPG R
Sbjct: 1131 PSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPR 1168
Score = 47.8 bits (112), Expect = 2e-05
Identities = 62/244 (25%), Positives = 81/244 (33%), Gaps = 28/244 (11%)
Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAP---APQ 210
P P P G A P PP G+ G + ++ P P+ + P +
Sbjct: 313 PGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGE 372
Query: 211 PGPTAP-----PARPPAYESREGPRGRAESRG--SGPAQPAHLPLPGPAHSPAPPAPELR 263
PGP P PA P + + G +G + G P P GP PP P+
Sbjct: 373 PGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGN 432
Query: 264 EGR--APGS--TAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRF 319
G APGS G + P G A +RG G + P G
Sbjct: 433 SGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPG------- 485
Query: 320 CRRRRRRGGGGEG-EGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRR 378
R G G G G GP P G R G A + GE R G P +
Sbjct: 486 ----ERGGPGSRGFPGADGVAGPKGPAGERGSP--GPAGPKGSPGEAGRPGEAGLPGAKG 539
Query: 379 VHGA 382
+ G+
Sbjct: 540 LTGS 543
Score = 44.3 bits (103), Expect = 2e-04
Identities = 61/215 (28%), Positives = 75/215 (34%), Gaps = 45/215 (20%)
Query: 183 PPRQEGSFGGRPKSQP--PLPQETAAPAP----QPGPTAPP--ARPPAYESREGPRGRAE 234
PP G+ G + +S P P A AP +PGP P A PP + + G +G
Sbjct: 771 PPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPG 830
Query: 235 SRGS-------GPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEES 287
G+ GPA PA PP P G APG+ G R P A
Sbjct: 831 DAGAKGDAGPPGPAGPA-----------GPPGPIGNVG-APGA-KGARGSAGPPGATGFP 877
Query: 288 GCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGE-GTHATHGPASPPG 346
G A G AG PP +G + G G GE G G PPG
Sbjct: 878 GAAGRVGPPGPSGNAGPPGPPGPAG-----------KEGGKGPRGETGPAGRPGEVGPPG 926
Query: 347 RRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHG 381
G A + G G TP P+ + G
Sbjct: 927 -----PPGPAGEKGSPGADGPAGAPGTPGPQGIAG 956
Score = 43.1 bits (100), Expect = 5e-04
Identities = 51/193 (26%), Positives = 64/193 (33%), Gaps = 44/193 (22%)
Query: 196 SQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSG--PAQPAHLPLPGPAH 253
S+ P QET G T P GPRG A G P QP LPGP
Sbjct: 99 SESPTDQETTGVEGPKGDTGP----------RGPRGPAGPPGRDGIPGQPG---LPGPPG 145
Query: 254 SPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGN 313
P PP P PG P+ + +G +V G G PP G
Sbjct: 146 PPGPPGP-------PGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPG- 197
Query: 314 GERCRFCRRRRRRGGGGE-----GEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRR 368
+ +G GE G GP PPG+ D+ +G+ R
Sbjct: 198 --------PQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDD--------GEAGKPGRP 241
Query: 369 GLQLTPPPRRVHG 381
G + P P+ G
Sbjct: 242 GERGPPGPQGARG 254
Score = 38.5 bits (88), Expect = 0.013
Identities = 56/208 (26%), Positives = 71/208 (34%), Gaps = 33/208 (15%)
Query: 181 PTPPRQEGSFGGR-PKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSG 239
P PP G G + P +P P + P+ GP PP + + G GR RG
Sbjct: 190 PGPPGAPGPQGFQGPPGEPGEPGASGPMGPR-GPPGPPGK-NGDDGEAGKPGRPGERGPP 247
Query: 240 PAQPAHLPLPGPAHSPAPPAPE----LREGRAPGSTAGRRPRPREPQAAEESGCATVGLR 295
Q A LPG A P L + AG + P P E +G R
Sbjct: 248 GPQGAR-GLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSP--GENGAPGQMGPR 304
Query: 296 --RGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEV 353
G+ R G+ P GN G G GPA PPG V
Sbjct: 305 GLPGERGRPGAPGPAGARGN-------------DGATGAAGPPGPTGPAGPPG--FPGAV 349
Query: 354 GAAVLRAGSGEGSRRGLQLTPPPRRVHG 381
GA GE +G + + P+ V G
Sbjct: 350 GA------KGEAGPQGPRGSEGPQGVRG 371
Score = 37.4 bits (85), Expect = 0.029
Identities = 56/199 (28%), Positives = 66/199 (33%), Gaps = 43/199 (21%)
Query: 69 NPKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRA-----TPPLPHPGDHHPRHRKNRGP 123
+P GD G+ G AP P A G V G++ T P G P RGP
Sbjct: 1029 SPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGA--RGP 1086
Query: 124 SAGTSQLGKKTQCRSLFLR-TKGLCALL-LELPPRPPPNLQEGGQRAIFQRPPVYLGNKP 181
+ G K + R KG L+ PP PP + E G + P
Sbjct: 1087 AGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSG---------ASGP 1137
Query: 182 TPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPA 241
PR G P PGP PP GPRGR +GP
Sbjct: 1138 AGPRGPPGSAGAPGKD--------GLNGLPGPIGPP----------GPRGRTGD--AGPV 1177
Query: 242 QPAHLPLPGPAHSPAPPAP 260
P PGP P PP P
Sbjct: 1178 GP-----PGPPGPPGPPGP 1191
Score = 35.0 bits (79), Expect = 0.14
Identities = 69/263 (26%), Positives = 81/263 (30%), Gaps = 43/263 (16%)
Query: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAP-PARPPAYESREGPRGRAESRG-S 238
P PP + G G K P P E P PQ P A P + G G ++G +
Sbjct: 223 PGPPGKNGDDGEAGK--PGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDA 280
Query: 239 GPAQPAHLP----------------LPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQ 282
GPA P P LPG P P P G + A P P P
Sbjct: 281 GPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGP- 339
Query: 283 AAEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPA 342
A VG + AG P + G + RG G G GPA
Sbjct: 340 AGPPGFPGAVGAK----GEAGPQGPRGSEG---------PQGVRGEPGP-PGPAGAAGPA 385
Query: 343 SPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRT 402
PG D + GA G G P R Q GG K N
Sbjct: 386 GNPGA--DGQPGAKGANGAPGIAGAPGF----PGARGPSGPQGPGGPPGPKGN-SGEPGA 438
Query: 403 PRRSGASGPKMVADQTSGISRPP 425
P G +G K G+ PP
Sbjct: 439 PGSKGDTGAKGEPGPV-GVQGPP 460
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 59.7 bits (143), Expect = 5e-09
Identities = 50/146 (34%), Positives = 57/146 (39%), Gaps = 29/146 (19%)
Query: 154 PPRPPPNLQEGGQRAIFQRP---PVYLGNKPTPPRQEGSFGGRPKSQPPL-PQETAAPAP 209
PP PPP Q + P P G++P PP F G+P QPPL P P P
Sbjct: 249 PPGPPPPGQ------VLPPPLAGPPNRGDRPPPPVL---FPGQPFGQPPLGPLPPGPPPP 299
Query: 210 QPGPTAPPARPPAYESREGPRGRAESRGSGP-------AQPAHLPLPGPAHSPAPPAPEL 262
PG PP PP + P G R GP A P H LPGP PPAP +
Sbjct: 300 VPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPH--LPGPPPGAPPPAPHV 357
Query: 263 REGRAPGST-------AGRRPRPREP 281
P T R P P +P
Sbjct: 358 NPAFFPPPTNSGMPTSDSRGPPPTDP 383
Score = 50.4 bits (119), Expect = 3e-06
Identities = 61/197 (30%), Positives = 68/197 (34%), Gaps = 24/197 (12%)
Query: 88 PVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRG-----PSAGTSQLGKKTQCRSLFLR 142
P FP G P PPL PG P G P AG G + LF
Sbjct: 228 PPFPA--GQTPPR----PPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPG 281
Query: 143 TKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQ--PPL 200
L LPP PPP + G PP + PP G F RP PPL
Sbjct: 282 QPFGQPPLGPLPPGPPPPVPGYGP------PPGPPPPQQGPPPPPGPFPPRPPGPLGPPL 335
Query: 201 PQETAAPAPQPGPTAPPARP---PAYESREGPRGR--AESRGSGPAQPAHLPLPGPAHSP 255
P P P APP P PA+ G ++SRG P P P P
Sbjct: 336 TLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRPPPYDRGDY 395
Query: 256 APPAPELREGRAPGSTA 272
PP E+ R P S A
Sbjct: 396 GPPGREMDTARTPLSEA 412
Score = 43.9 bits (102), Expect = 3e-04
Identities = 33/113 (29%), Positives = 37/113 (32%), Gaps = 25/113 (22%)
Query: 191 GGRPKSQPPLPQETAAPAPQ---PGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHL- 246
GG P PP P P P PGP PP PP + P +RG P P
Sbjct: 224 GGPP---PPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFP 280
Query: 247 ------------------PLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREP 281
P+PG P PP P+ PG R P P P
Sbjct: 281 GQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGP 333
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 59.7 bits (143), Expect = 5e-09
Identities = 64/242 (26%), Positives = 85/242 (35%), Gaps = 53/242 (21%)
Query: 153 LPPRPPPNLQEG-----------GQRAIFQRPPVYLGNK-PTPPRQEGSFGGRPKSQPPL 200
LP P P EG G+ A+ V LG P PP + +GG + L
Sbjct: 432 LPQPPAPRAPEGDDFLSLHAESDGEGAL----QVDLGEPAPAPPAADSRWGGLDLRRKIL 487
Query: 201 PQE-------TAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAH 253
Q + +PAP P P A P +SR + E++ + + P P
Sbjct: 488 TQRRERYRQRSPSPAPAPAPAAAAGPPTRKKSRRERKRSGEAKEAASSSSGTQPAPPAPA 547
Query: 254 SPAPPAPELREGRAPG----STAGRRPRPREPQAAEESGCATVGLRRGDCDRAGS----- 304
SP R PG S+A RR R R + + RRG R+ S
Sbjct: 548 SPWDSKKHRSRDRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSRRSRSREKRR 607
Query: 305 ------SQPPATSGNGERCRFCRRRRRRGGGG---------------EGEGTHATHGPAS 343
S PPATS + R R + R GGG G+G+ PA
Sbjct: 608 RRRRSASPPPATSSSSSSRRERHRGKHRDGGGSKKKKKRSRSRGEKRSGDGSEKAPAPAP 667
Query: 344 PP 345
PP
Sbjct: 668 PP 669
Score = 46.6 bits (109), Expect = 5e-05
Identities = 78/286 (27%), Positives = 97/286 (33%), Gaps = 57/286 (19%)
Query: 191 GGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPG 250
GGR + P P +A P QP P P R P E + AES G G Q + L
Sbjct: 413 GGR--AARPTPAASATPTAQPLPQPPAPRAP--EGDDFLSLHAESDGEGALQ---VDLGE 465
Query: 251 PAHSPAPPAPELREG-----RAPGSTAGRRPRPREPQAAEESGCATVG------------ 293
PA PAPPA + R G R + R R R P A A
Sbjct: 466 PA--PAPPAADSRWGGLDLRRKILTQRRERYRQRSPSPAPAPAPAAAAGPPTRKKSRRER 523
Query: 294 LRRGDCDRAGSSQ------PPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGR 347
R G+ A SS PPA + + + R R+ G + +
Sbjct: 524 KRSGEAKEAASSSSGTQPAPPAPASPWDSKKHRSRDRKPGSHASSSARRRSRSRSRSRST 583
Query: 348 RH-----DEEVGAAVLRAGSGEGSRRGLQLTPPP---------RRVHGALQRFGGGRNLK 393
R D G + + RR +PPP R H R GGG K
Sbjct: 584 RRRSRSTDRRRGGSRRSRSREKRRRRRRSASPPPATSSSSSSRRERHRGKHRDGGGSKKK 643
Query: 394 SNWMSTTRTPRRSGASGPKMVADQTSGISRPPTAGIGTSRLCLGDR 439
S +R +RSG K A PP +G S C GDR
Sbjct: 644 KK-RSRSRGEKRSGDGSEKAPA------PAPPPSG---STSC-GDR 678
Score = 38.1 bits (87), Expect = 0.017
Identities = 34/114 (29%), Positives = 45/114 (39%), Gaps = 11/114 (9%)
Query: 179 NKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTA------PPARPPAYESREGPRGR 232
++PT R G PP +A+ +P P P++ PP PPA + PR
Sbjct: 167 SRPTCARHLTLGTGDGGPAPPPAPSSASSSPSPSPSSSSPSPPPPPPPPAPPAPPAPRFD 226
Query: 233 AESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEE 286
P A+ P P P P P G P S+AG P P E + EE
Sbjct: 227 IYD-PFHPTDEAYSPPPAPEQKYDPFEP---TGSNPSSSAG-TPSPEEEEEEEE 275
Score = 32.0 bits (71), Expect = 1.2
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 207 PAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPL----PGPAHSPAPPAPEL 262
P P P P+ P R A+ R G +S S P HL L GPA PAP +
Sbjct: 139 PIPLPVPSLLP-RLRAW--RTGKTVSPQSNSSRPTCARHLTLGTGDGGPAPPPAPSSASS 195
Query: 263 REGRAPGSTAGRRPRPREPQA 283
+P S++ P P P A
Sbjct: 196 SPSPSPSSSSPSPPPPPPPPA 216
Score = 30.8 bits (68), Expect = 2.7
Identities = 26/84 (30%), Positives = 31/84 (36%), Gaps = 10/84 (11%)
Query: 173 PPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQ---PGPTAPP----ARPPAYES 225
PP +P S P PP P A PAP+ P P + PPA E
Sbjct: 187 PPAPSSASSSPSPSPSSSSPSPPPPPPPPAPPAPPAPRFDIYDPFHPTDEAYSPPPAPEQ 246
Query: 226 REGPRGRAESRGSGPAQPAHLPLP 249
+ P E GS P+ A P P
Sbjct: 247 KYDP---FEPTGSNPSSSAGTPSP 267
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 58.9 bits (141), Expect = 9e-09
Identities = 91/352 (25%), Positives = 111/352 (31%), Gaps = 65/352 (18%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQ 129
P G G+ G P FP A G + G A P P R +RG T +
Sbjct: 852 PGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGK 911
Query: 130 LGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRP-------PVYLGNKPT 182
G K + PP PP G + P P P
Sbjct: 912 PGPKGTSGG-------------DGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPG 958
Query: 183 PPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAP--------PARPPAYESREGPRGRAE 234
P Q G G + K+ PP P P G T P P PP + G G+
Sbjct: 959 HPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEG 1018
Query: 235 SRG----------SGPAQ----PAHLPLPGPAHSP---------APPAPELREG-RAPGS 270
++G GPA P LPG +P PP P G R
Sbjct: 1019 AKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAG 1078
Query: 271 TAG-----RRPRPREPQA-AEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRR 324
TAG RP P+ P A E G +G R G P G
Sbjct: 1079 TAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDG 1138
Query: 325 RRGGGGE-----GEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQ 371
+G GE +G +GP PPG + VGA + G GE RG Q
Sbjct: 1139 DKGEIGEPGQKGSKGDKGENGPPGPPGLQ--GPVGAPGIAGGDGEPGPRGQQ 1188
Score = 48.9 bits (115), Expect = 1e-05
Identities = 71/277 (25%), Positives = 91/277 (32%), Gaps = 45/277 (16%)
Query: 157 PPPNLQEGGQRAIFQRP---------PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAP 207
P + QE +AI Q+ P+ L +P P GS G + +S P PQ
Sbjct: 519 PTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGV 578
Query: 208 APQPGPTAPPAR--PPAYESREGPRGRAESRGSG--------PAQPAHLPLPGPAHSPAP 257
PGPT P + P + G G ++G P H GP P P
Sbjct: 579 QGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP 638
Query: 258 PAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERC 317
P + G G R P E G G AG PP GN
Sbjct: 639 PGDDGMRGE--DGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ 696
Query: 318 RFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDE-EVGAAVLRAGSGEGSRRGLQ----- 371
++G G +G GP PPG + + + G A L G G +
Sbjct: 697 GEPGPPGQQGNPGP-QGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGE 755
Query: 372 ---LTPP----------PRRVHGALQRFGGGRNLKSN 395
L PP PR V GA G R LK +
Sbjct: 756 KGALGPPGPQGPIGYPGPRGVKGA----DGVRGLKGS 788
Score = 48.1 bits (113), Expect = 2e-05
Identities = 63/235 (26%), Positives = 82/235 (34%), Gaps = 47/235 (20%)
Query: 174 PVYLGNKPTPPRQEGSFG-----GRPKSQPPLPQETAAPAPQPGPTAPPAR--------- 219
P+ L P PP ++G G G P PP P+ P GP PP
Sbjct: 1208 PIGLQGLPGPPGEKGENGDVGPMGPP--GPPGPRGPQGPNGADGPQGPPGSVGSVGGVGE 1265
Query: 220 -----------PPAYESREGPRG-RAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGR- 266
PP GP+G R E +GP A GP + PP + +G
Sbjct: 1266 KGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAA-----GPPGAKGPPGDDGPKGNP 1320
Query: 267 APGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGN-GERCRFCRRRRR 325
P G P EP A + G VG +G+ G PP SG G +R
Sbjct: 1321 GPVGFPGDPGPPGEPGPAGQDG---VGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPP 1377
Query: 326 RGGGGEG----EGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPP 376
G EG +G G PPG+ G + +G+ GL+ P P
Sbjct: 1378 GAAGAEGRQGEKGAKGEAGAEGPPGK-----TGPVGPQGPAGKPGPEGLRGIPGP 1427
Score = 43.5 bits (101), Expect = 4e-04
Identities = 30/81 (37%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 183 PPRQEGSFGGR----PKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGS 238
PP ++G G R + P + P P GP PP PP +GP+G S +
Sbjct: 1475 PPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPA-GPLGPPG-PPGLPGPQGPKGNKGS--T 1530
Query: 239 GPA-QPAHLPLPGPAHSPAPP 258
GPA Q LPGP SP PP
Sbjct: 1531 GPAGQKGDSGLPGPPGSPGPP 1551
Score = 39.7 bits (91), Expect = 0.006
Identities = 60/237 (25%), Positives = 75/237 (31%), Gaps = 43/237 (18%)
Query: 165 GQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARP--PA 222
G+ A+ + P + + P P G G PP Q P PG PP RP P
Sbjct: 441 GEPAVVE-PGMLVEGPPGPAGPAGIMG------PPGLQGPTGPPGDPGDRGPPGRPGLPG 493
Query: 223 YESREGPRG--------------------RAESRGSGPAQPAHLPL---PGPAHSPAPPA 259
+ GP G E++ Q A + L PGP P
Sbjct: 494 ADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPG 553
Query: 260 PELREGRAPGSTAGRRPRPREPQAAEESGCAT--VGLRRGDCDRAGSSQPPATSGNGERC 317
P G + P P+ P+ + T G R G P G+R
Sbjct: 554 PVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDR- 612
Query: 318 RFCRRRRRRGGGGEGEGTHATHGPASPPG----RRHDEEVGAAVLRAGSGEGSRRGL 370
F G G G GP PPG R D E+G R GE RGL
Sbjct: 613 GFDGLPGLPGDKGH-RGERGPQGPPGPPGDDGMRGEDGEIGP---RGLPGEAGPRGL 665
Score = 39.7 bits (91), Expect = 0.006
Identities = 60/254 (23%), Positives = 78/254 (30%), Gaps = 34/254 (13%)
Query: 188 GSFGGRPKSQPPLPQETAAPAPQPGPTAPPARP--------PAYESREGPRGRAESRGSG 239
G G R + P P+ A P PGP+ P Y R+GP+G G
Sbjct: 814 GQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFP 873
Query: 240 PAQPAH-----LPLPGPAHSPAPPAPE-LREGRAP-------GSTAGRRPRPREPQAAEE 286
A PGP P P R R P G++ G P + +
Sbjct: 874 GANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQ 933
Query: 287 SGCATVGL--RRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASP 344
VG +G G P G F + G GG G G P
Sbjct: 934 GPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGV-VGPQGPTGETGP 992
Query: 345 PGRR-HDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHG-----ALQRFGGGRNLKSNWMS 398
G R H G + G + G + P P+ + G L+ F G R L
Sbjct: 993 IGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLP----G 1048
Query: 399 TTRTPRRSGASGPK 412
P G GP+
Sbjct: 1049 AQGAPGLKGGEGPQ 1062
Score = 35.4 bits (80), Expect = 0.11
Identities = 53/214 (24%), Positives = 69/214 (32%), Gaps = 41/214 (19%)
Query: 94 KGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLEL 153
KG G+ PP P P RGP G++ + + KG
Sbjct: 1347 KGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGA-----KGEAGA---- 1397
Query: 154 PPRPPPNLQEGGQRAIFQRP-PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG 212
PP G + +P P L P P ++G G + PP P P PG
Sbjct: 1398 -EGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPM---GPPGLPG 1453
Query: 213 PTAPPAR--------------PPAYESREGPRGRAESRGS----------GPAQPAHLPL 248
P PP + +G RG ++GS GPA P L
Sbjct: 1454 LKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGP--LGP 1511
Query: 249 PGPAHSPAPPAPELREG-RAPGSTAGRRPRPREP 281
PGP P P P+ +G P G P P
Sbjct: 1512 PGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPP 1545
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 58.9 bits (141), Expect = 9e-09
Identities = 91/352 (25%), Positives = 111/352 (31%), Gaps = 65/352 (18%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQ 129
P G G+ G P FP A G + G A P P R +RG T +
Sbjct: 801 PGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGK 860
Query: 130 LGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRP-------PVYLGNKPT 182
G K + PP PP G + P P P
Sbjct: 861 PGPKGTSGG-------------DGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPG 907
Query: 183 PPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAP--------PARPPAYESREGPRGRAE 234
P Q G G + K+ PP P P G T P P PP + G G+
Sbjct: 908 HPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEG 967
Query: 235 SRG----------SGPAQ----PAHLPLPGPAHSP---------APPAPELREG-RAPGS 270
++G GPA P LPG +P PP P G R
Sbjct: 968 AKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAG 1027
Query: 271 TAG-----RRPRPREPQA-AEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRR 324
TAG RP P+ P A E G +G R G P G
Sbjct: 1028 TAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDG 1087
Query: 325 RRGGGGE-----GEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQ 371
+G GE +G +GP PPG + VGA + G GE RG Q
Sbjct: 1088 DKGEIGEPGQKGSKGDKGENGPPGPPGLQ--GPVGAPGIAGGDGEPGPRGQQ 1137
Score = 48.9 bits (115), Expect = 1e-05
Identities = 71/277 (25%), Positives = 91/277 (32%), Gaps = 45/277 (16%)
Query: 157 PPPNLQEGGQRAIFQRP---------PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAP 207
P + QE +AI Q+ P+ L +P P GS G + +S P PQ
Sbjct: 468 PTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGV 527
Query: 208 APQPGPTAPPAR--PPAYESREGPRGRAESRGSG--------PAQPAHLPLPGPAHSPAP 257
PGPT P + P + G G ++G P H GP P P
Sbjct: 528 QGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP 587
Query: 258 PAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERC 317
P + G G R P E G G AG PP GN
Sbjct: 588 PGDDGMRGE--DGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ 645
Query: 318 RFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDE-EVGAAVLRAGSGEGSRRGLQ----- 371
++G G +G GP PPG + + + G A L G G +
Sbjct: 646 GEPGPPGQQGNPGP-QGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGE 704
Query: 372 ---LTPP----------PRRVHGALQRFGGGRNLKSN 395
L PP PR V GA G R LK +
Sbjct: 705 KGALGPPGPQGPIGYPGPRGVKGA----DGVRGLKGS 737
Score = 48.1 bits (113), Expect = 2e-05
Identities = 63/235 (26%), Positives = 82/235 (34%), Gaps = 47/235 (20%)
Query: 174 PVYLGNKPTPPRQEGSFG-----GRPKSQPPLPQETAAPAPQPGPTAPPAR--------- 219
P+ L P PP ++G G G P PP P+ P GP PP
Sbjct: 1157 PIGLQGLPGPPGEKGENGDVGPMGPP--GPPGPRGPQGPNGADGPQGPPGSVGSVGGVGE 1214
Query: 220 -----------PPAYESREGPRG-RAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGR- 266
PP GP+G R E +GP A GP + PP + +G
Sbjct: 1215 KGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAA-----GPPGAKGPPGDDGPKGNP 1269
Query: 267 APGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGN-GERCRFCRRRRR 325
P G P EP A + G VG +G+ G PP SG G +R
Sbjct: 1270 GPVGFPGDPGPPGEPGPAGQDG---VGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPP 1326
Query: 326 RGGGGEG----EGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPP 376
G EG +G G PPG+ G + +G+ GL+ P P
Sbjct: 1327 GAAGAEGRQGEKGAKGEAGAEGPPGK-----TGPVGPQGPAGKPGPEGLRGIPGP 1376
Score = 43.5 bits (101), Expect = 4e-04
Identities = 30/81 (37%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 183 PPRQEGSFGGR----PKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGS 238
PP ++G G R + P + P P GP PP PP +GP+G S +
Sbjct: 1424 PPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPA-GPLGPPG-PPGLPGPQGPKGNKGS--T 1479
Query: 239 GPA-QPAHLPLPGPAHSPAPP 258
GPA Q LPGP SP PP
Sbjct: 1480 GPAGQKGDSGLPGPPGSPGPP 1500
Score = 39.7 bits (91), Expect = 0.006
Identities = 60/237 (25%), Positives = 75/237 (31%), Gaps = 43/237 (18%)
Query: 165 GQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARP--PA 222
G+ A+ + P + + P P G G PP Q P PG PP RP P
Sbjct: 390 GEPAVVE-PGMLVEGPPGPAGPAGIMG------PPGLQGPTGPPGDPGDRGPPGRPGLPG 442
Query: 223 YESREGPRG--------------------RAESRGSGPAQPAHLPL---PGPAHSPAPPA 259
+ GP G E++ Q A + L PGP P
Sbjct: 443 ADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPG 502
Query: 260 PELREGRAPGSTAGRRPRPREPQAAEESGCAT--VGLRRGDCDRAGSSQPPATSGNGERC 317
P G + P P+ P+ + T G R G P G+R
Sbjct: 503 PVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDR- 561
Query: 318 RFCRRRRRRGGGGEGEGTHATHGPASPPG----RRHDEEVGAAVLRAGSGEGSRRGL 370
F G G G GP PPG R D E+G R GE RGL
Sbjct: 562 GFDGLPGLPGDKGH-RGERGPQGPPGPPGDDGMRGEDGEIGP---RGLPGEAGPRGL 614
Score = 39.7 bits (91), Expect = 0.006
Identities = 60/254 (23%), Positives = 78/254 (30%), Gaps = 34/254 (13%)
Query: 188 GSFGGRPKSQPPLPQETAAPAPQPGPTAPPARP--------PAYESREGPRGRAESRGSG 239
G G R + P P+ A P PGP+ P Y R+GP+G G
Sbjct: 763 GQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFP 822
Query: 240 PAQPAH-----LPLPGPAHSPAPPAPE-LREGRAP-------GSTAGRRPRPREPQAAEE 286
A PGP P P R R P G++ G P + +
Sbjct: 823 GANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQ 882
Query: 287 SGCATVGL--RRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASP 344
VG +G G P G F + G GG G G P
Sbjct: 883 GPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGV-VGPQGPTGETGP 941
Query: 345 PGRR-HDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHG-----ALQRFGGGRNLKSNWMS 398
G R H G + G + G + P P+ + G L+ F G R L
Sbjct: 942 IGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLP----G 997
Query: 399 TTRTPRRSGASGPK 412
P G GP+
Sbjct: 998 AQGAPGLKGGEGPQ 1011
Score = 35.4 bits (80), Expect = 0.11
Identities = 53/214 (24%), Positives = 69/214 (32%), Gaps = 41/214 (19%)
Query: 94 KGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLEL 153
KG G+ PP P P RGP G++ + + KG
Sbjct: 1296 KGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGA-----KGEAGA---- 1346
Query: 154 PPRPPPNLQEGGQRAIFQRP-PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG 212
PP G + +P P L P P ++G G + PP P P PG
Sbjct: 1347 -EGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPM---GPPGLPG 1402
Query: 213 PTAPPAR--------------PPAYESREGPRGRAESRGS----------GPAQPAHLPL 248
P PP + +G RG ++GS GPA P L
Sbjct: 1403 LKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGP--LGP 1460
Query: 249 PGPAHSPAPPAPELREG-RAPGSTAGRRPRPREP 281
PGP P P P+ +G P G P P
Sbjct: 1461 PGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPP 1494
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 58.9 bits (141), Expect = 9e-09
Identities = 91/352 (25%), Positives = 111/352 (31%), Gaps = 65/352 (18%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQ 129
P G G+ G P FP A G + G A P P R +RG T +
Sbjct: 840 PGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGK 899
Query: 130 LGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRP-------PVYLGNKPT 182
G K + PP PP G + P P P
Sbjct: 900 PGPKGTSGG-------------DGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPG 946
Query: 183 PPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAP--------PARPPAYESREGPRGRAE 234
P Q G G + K+ PP P P G T P P PP + G G+
Sbjct: 947 HPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEG 1006
Query: 235 SRG----------SGPAQ----PAHLPLPGPAHSP---------APPAPELREG-RAPGS 270
++G GPA P LPG +P PP P G R
Sbjct: 1007 AKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAG 1066
Query: 271 TAG-----RRPRPREPQA-AEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRR 324
TAG RP P+ P A E G +G R G P G
Sbjct: 1067 TAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDG 1126
Query: 325 RRGGGGE-----GEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQ 371
+G GE +G +GP PPG + VGA + G GE RG Q
Sbjct: 1127 DKGEIGEPGQKGSKGDKGENGPPGPPGLQ--GPVGAPGIAGGDGEPGPRGQQ 1176
Score = 48.9 bits (115), Expect = 1e-05
Identities = 71/277 (25%), Positives = 91/277 (32%), Gaps = 45/277 (16%)
Query: 157 PPPNLQEGGQRAIFQRP---------PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAP 207
P + QE +AI Q+ P+ L +P P GS G + +S P PQ
Sbjct: 507 PTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGV 566
Query: 208 APQPGPTAPPAR--PPAYESREGPRGRAESRGSG--------PAQPAHLPLPGPAHSPAP 257
PGPT P + P + G G ++G P H GP P P
Sbjct: 567 QGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP 626
Query: 258 PAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERC 317
P + G G R P E G G AG PP GN
Sbjct: 627 PGDDGMRGE--DGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ 684
Query: 318 RFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDE-EVGAAVLRAGSGEGSRRGLQ----- 371
++G G +G GP PPG + + + G A L G G +
Sbjct: 685 GEPGPPGQQGNPGP-QGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGE 743
Query: 372 ---LTPP----------PRRVHGALQRFGGGRNLKSN 395
L PP PR V GA G R LK +
Sbjct: 744 KGALGPPGPQGPIGYPGPRGVKGA----DGVRGLKGS 776
Score = 48.1 bits (113), Expect = 2e-05
Identities = 63/235 (26%), Positives = 82/235 (34%), Gaps = 47/235 (20%)
Query: 174 PVYLGNKPTPPRQEGSFG-----GRPKSQPPLPQETAAPAPQPGPTAPPAR--------- 219
P+ L P PP ++G G G P PP P+ P GP PP
Sbjct: 1196 PIGLQGLPGPPGEKGENGDVGPMGPP--GPPGPRGPQGPNGADGPQGPPGSVGSVGGVGE 1253
Query: 220 -----------PPAYESREGPRG-RAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGR- 266
PP GP+G R E +GP A GP + PP + +G
Sbjct: 1254 KGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAA-----GPPGAKGPPGDDGPKGNP 1308
Query: 267 APGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGN-GERCRFCRRRRR 325
P G P EP A + G VG +G+ G PP SG G +R
Sbjct: 1309 GPVGFPGDPGPPGEPGPAGQDG---VGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPP 1365
Query: 326 RGGGGEG----EGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPP 376
G EG +G G PPG+ G + +G+ GL+ P P
Sbjct: 1366 GAAGAEGRQGEKGAKGEAGAEGPPGK-----TGPVGPQGPAGKPGPEGLRGIPGP 1415
Score = 43.5 bits (101), Expect = 4e-04
Identities = 30/81 (37%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 183 PPRQEGSFGGR----PKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGS 238
PP ++G G R + P + P P GP PP PP +GP+G S +
Sbjct: 1463 PPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPA-GPLGPPG-PPGLPGPQGPKGNKGS--T 1518
Query: 239 GPA-QPAHLPLPGPAHSPAPP 258
GPA Q LPGP SP PP
Sbjct: 1519 GPAGQKGDSGLPGPPGSPGPP 1539
Score = 39.7 bits (91), Expect = 0.006
Identities = 60/237 (25%), Positives = 75/237 (31%), Gaps = 43/237 (18%)
Query: 165 GQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARP--PA 222
G+ A+ + P + + P P G G PP Q P PG PP RP P
Sbjct: 429 GEPAVVE-PGMLVEGPPGPAGPAGIMG------PPGLQGPTGPPGDPGDRGPPGRPGLPG 481
Query: 223 YESREGPRG--------------------RAESRGSGPAQPAHLPL---PGPAHSPAPPA 259
+ GP G E++ Q A + L PGP P
Sbjct: 482 ADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPG 541
Query: 260 PELREGRAPGSTAGRRPRPREPQAAEESGCAT--VGLRRGDCDRAGSSQPPATSGNGERC 317
P G + P P+ P+ + T G R G P G+R
Sbjct: 542 PVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDR- 600
Query: 318 RFCRRRRRRGGGGEGEGTHATHGPASPPG----RRHDEEVGAAVLRAGSGEGSRRGL 370
F G G G GP PPG R D E+G R GE RGL
Sbjct: 601 GFDGLPGLPGDKGH-RGERGPQGPPGPPGDDGMRGEDGEIGP---RGLPGEAGPRGL 653
Score = 39.7 bits (91), Expect = 0.006
Identities = 60/254 (23%), Positives = 78/254 (30%), Gaps = 34/254 (13%)
Query: 188 GSFGGRPKSQPPLPQETAAPAPQPGPTAPPARP--------PAYESREGPRGRAESRGSG 239
G G R + P P+ A P PGP+ P Y R+GP+G G
Sbjct: 802 GQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFP 861
Query: 240 PAQPAH-----LPLPGPAHSPAPPAPE-LREGRAP-------GSTAGRRPRPREPQAAEE 286
A PGP P P R R P G++ G P + +
Sbjct: 862 GANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQ 921
Query: 287 SGCATVGL--RRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASP 344
VG +G G P G F + G GG G G P
Sbjct: 922 GPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGV-VGPQGPTGETGP 980
Query: 345 PGRR-HDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHG-----ALQRFGGGRNLKSNWMS 398
G R H G + G + G + P P+ + G L+ F G R L
Sbjct: 981 IGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLP----G 1036
Query: 399 TTRTPRRSGASGPK 412
P G GP+
Sbjct: 1037 AQGAPGLKGGEGPQ 1050
Score = 35.4 bits (80), Expect = 0.11
Identities = 53/214 (24%), Positives = 69/214 (32%), Gaps = 41/214 (19%)
Query: 94 KGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLEL 153
KG G+ PP P P RGP G++ + + KG
Sbjct: 1335 KGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGA-----KGEAGA---- 1385
Query: 154 PPRPPPNLQEGGQRAIFQRP-PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG 212
PP G + +P P L P P ++G G + PP P P PG
Sbjct: 1386 -EGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPM---GPPGLPG 1441
Query: 213 PTAPPAR--------------PPAYESREGPRGRAESRGS----------GPAQPAHLPL 248
P PP + +G RG ++GS GPA P L
Sbjct: 1442 LKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGP--LGP 1499
Query: 249 PGPAHSPAPPAPELREG-RAPGSTAGRRPRPREP 281
PGP P P P+ +G P G P P
Sbjct: 1500 PGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPP 1533
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 58.5 bits (140), Expect = 1e-08
Identities = 74/286 (25%), Positives = 107/286 (37%), Gaps = 49/286 (17%)
Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG- 212
P PPP +G + + PP KP P +G G +P+ PP P + P PQ G
Sbjct: 77 PQGPPP---QGDKSRSPRSPP----GKPQGPPPQG--GNQPQGPPPPPGKPQGPPPQGGN 127
Query: 213 -PTAPPARPPAYESREGPRG-RAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGS 270
P PP PP P+G ++ S S P +P P P + P P P + + P
Sbjct: 128 RPQGPP--PPGKPQGPPPQGDKSRSPRSPPGKPQG-PPPQGGNQPQGPPPPPGKPQGPPP 184
Query: 271 TAGRRPR----PREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRR 326
G++P+ P +PQ G D++ SSQ P G +
Sbjct: 185 QGGKKPQGPPPPGKPQGPPPQG-----------DKSRSSQSPPGKPQGPPPQ-------- 225
Query: 327 GGGGEGEGTHATHG-PASPPGRRHDEEVGAAVLRAGSG---EGSRRGLQLTPPPRRVHGA 382
GG + +G G P PP + ++ G G +G + PP + G
Sbjct: 226 -GGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGP 284
Query: 383 LQRFGGGRNLKSNWMSTTRTPRRSGASGPKMVADQTSGISRPPTAG 428
Q+ G N + P++ A A Q G RPP G
Sbjct: 285 PQQ--EGNNPQGPPPPAGGNPQQPQAP----PAGQPQGPPRPPQGG 324
Score = 53.1 bits (126), Expect = 5e-07
Identities = 45/180 (25%), Positives = 66/180 (36%), Gaps = 30/180 (16%)
Query: 171 QRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG--PTAPPARPPAYESREG 228
+ P + P P +G G +P+ PP P + P PQ G P PP PP
Sbjct: 26 EESPSLIAGNPQGPSPQG--GNKPQGPPPPPGKPQGPPPQGGNKPQGPP--PPGKPQGPP 81
Query: 229 PRG-RAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEES 287
P+G ++ S S P +P P P + P P P + + P G RP+ P
Sbjct: 82 PQGDKSRSPRSPPGKPQG-PPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPP------ 134
Query: 288 GCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGR 347
+P G++ R R + G +G + GP PPG+
Sbjct: 135 ----------------PGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGK 178
Score = 38.1 bits (87), Expect = 0.017
Identities = 33/107 (30%), Positives = 37/107 (34%), Gaps = 27/107 (25%)
Query: 155 PRPPPNLQEGGQRAIFQRPPVYLGNKPT----------PPRQEGSFGGRPKSQPPLPQ-- 202
P PPP +G PP GNKP PP Q GS +S P PQ
Sbjct: 233 PPPPPGKPQG--------PPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGP 284
Query: 203 -------ETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQ 242
P P G P PPA + + PR R S P Q
Sbjct: 285 PQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPSRPPQ 331
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 58.2 bits (139), Expect = 2e-08
Identities = 47/167 (28%), Positives = 67/167 (40%), Gaps = 20/167 (11%)
Query: 155 PRPPPNLQEG-----GQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAP 209
P PPP EG G ++ Q PP + G PP Q G+ + + PP P + P P
Sbjct: 71 PPPPPGKPEGRPPQGGNQS--QGPPPHPGKPERPPPQGGN---QSQGTPPPPGKPERPPP 125
Query: 210 QPGPTAP-PARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRAP 268
Q G + P PP R P+G +S+G P P P PP E + R+
Sbjct: 126 QGGNQSHRPPPPPGKPERPPPQGGNQSQG---------PPPHPGKPEGPPPQEGNKSRSA 176
Query: 269 GSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGE 315
S G+ P + + + G G +G G+ Q P G+
Sbjct: 177 RSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAGGNPQQPQAPPAGK 223
Score = 58.2 bits (139), Expect = 2e-08
Identities = 46/134 (34%), Positives = 60/134 (44%), Gaps = 15/134 (11%)
Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGP 213
P RPPP +GG ++ RPP G PP Q G+ P PP P + P PQ G
Sbjct: 120 PERPPP---QGGNQS--HRPPPPPGKPERPPPQGGNQSQGP---PPHPGKPEGPPPQEGN 171
Query: 214 TAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPA-----HSPAPPAPELREGRAP 268
+ AR P + +GP + ++ GP P P PA APPA + +G P
Sbjct: 172 KSRSARSPPGKP-QGPPQQEGNKPQGPPPPGKPQGPPPAGGNPQQPQAPPAGK-PQGPPP 229
Query: 269 GSTAGRRPRPREPQ 282
GR PRP + Q
Sbjct: 230 PPQGGRPPRPAQGQ 243
Score = 53.5 bits (127), Expect = 4e-07
Identities = 42/128 (32%), Positives = 51/128 (39%), Gaps = 28/128 (21%)
Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQ-----ETAAPA 208
P RPPP +GG ++ Q PP + G PP QEG+ +S P PQ E P
Sbjct: 141 PERPPP---QGGNQS--QGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQ 195
Query: 209 PQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRAP 268
P P P PPA G P QP P P P PP + GR P
Sbjct: 196 GPPPPGKPQGPPPA--------------GGNPQQPQAPPAGKPQGPPPPP----QGGRPP 237
Query: 269 GSTAGRRP 276
G++P
Sbjct: 238 RPAQGQQP 245
Score = 50.8 bits (120), Expect = 3e-06
Identities = 59/229 (25%), Positives = 83/229 (36%), Gaps = 13/229 (5%)
Query: 163 EGGQRAIFQRPPVYL-GNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG-PTAPPARP 220
E + Q ++L KP R +G G +P+ PP P + P PQ G + P P
Sbjct: 17 ESSSEDVSQEESLFLISGKPEGRRPQG--GNQPQRPPPPPGKPQGPPPQGGNQSQGPPPP 74
Query: 221 PAYESREGPRGRAESRG--SGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRP 278
P P+G +S+G P +P P G S P P + R P + RP
Sbjct: 75 PGKPEGRPPQGGNQSQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRP 134
Query: 279 REPQAAEESGCATVGLR-RGDCDRAGSSQ-PPATSGNGERCRFCRRRRRRG----GGGEG 332
P E G + +G G + PP GN R + +G G +
Sbjct: 135 PPPPGKPERPPPQGGNQSQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKP 194
Query: 333 EGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHG 381
+G P PP + + A AG +G Q PPR G
Sbjct: 195 QGPPPPGKPQGPPPAGGNPQQPQAP-PAGKPQGPPPPPQGGRPPRPAQG 242
Score = 43.5 bits (101), Expect = 4e-04
Identities = 32/94 (34%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGP 213
P PPP QEG + + PP G PP+QEG+ +P+ PP P + P P G
Sbjct: 162 PEGPPP--QEGNKSRSARSPP---GKPQGPPQQEGN---KPQGPPP-PGKPQGPPPAGGN 212
Query: 214 TAPPARPPAYESREGPRGRAESRGSGPAQPAHLP 247
P PPA + + P R PAQ P
Sbjct: 213 PQQPQAPPAGKPQGPPPPPQGGRPPRPAQGQQPP 246
Score = 37.4 bits (85), Expect = 0.029
Identities = 47/158 (29%), Positives = 56/158 (35%), Gaps = 46/158 (29%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEG--RATPPLPHPGDHHPRHRKNRGPSAGT 127
P+R G +H R P P P +G ++ P PHPG K GP
Sbjct: 120 PERPPPQGGNQSH---RPPPPPGKPERPPPQGGNQSQGPPPHPG-------KPEGPPP-- 167
Query: 128 SQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQE 187
Q G K++ R PP +G PP GNKP P
Sbjct: 168 -QEGNKSRSA------------------RSPPGKPQG--------PPQQEGNKPQGPPPP 200
Query: 188 GSFGGRPKS--QPPLPQETAAPAPQPGPTAPP--ARPP 221
G G P + P PQ A PQ GP PP RPP
Sbjct: 201 GKPQGPPPAGGNPQQPQAPPAGKPQ-GPPPPPQGGRPP 237
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 57.8 bits (138), Expect = 2e-08
Identities = 94/364 (25%), Positives = 115/364 (31%), Gaps = 87/364 (23%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHP-GDHHPRH-RKNRGPSAGT 127
P G G+ G + P FP A G GR TP P P G P R RGP T
Sbjct: 870 PGLPGYPGRQGPKGSIGFPGFPGANGE--KGGRGTPGKPGPRGQRGPTGPRGERGPRGIT 927
Query: 128 SQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTP---- 183
+ G K + P PP G Q P + G K P
Sbjct: 928 GKPGPKGNSGG-------------DGPAGPPGERGPNGP----QGPTGFPGPKGPPGPPG 970
Query: 184 -------PRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAP--------PARPPAYESREG 228
P Q G G + K+ PP P P G T P P PP + G
Sbjct: 971 KDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPG 1030
Query: 229 PRGRAESRGS-GPAQ-------------PAHLPLPGPAHS---------PAPPAPELREG 265
G+ ++G GPA P LPGP + P PP P G
Sbjct: 1031 LAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPG 1090
Query: 266 -RAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRR 324
R P AG P P G A G+ G P +G
Sbjct: 1091 ERGPAGAAGPIGIPGRPGPQGPPGPA------GEKGAPGEKGPQGPAG------------ 1132
Query: 325 RRGGGGEGEGTHATHGPASPPGRRHDE-EVGAAVLRAGSGEGSRRGLQLTPPPRRVHGAL 383
R G G GP PPG D+ E+G + G+ +G Q P P G +
Sbjct: 1133 -RDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGD---KGEQGPPGPTGPQGPI 1188
Query: 384 QRFG 387
+ G
Sbjct: 1189 GQPG 1192
Score = 52.8 bits (125), Expect = 7e-07
Identities = 75/294 (25%), Positives = 99/294 (33%), Gaps = 46/294 (15%)
Query: 91 PVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALL 150
P KGS +G PP P G P + GPS + G + Q +GL
Sbjct: 1164 PGQKGSKGDKGEQGPPGP-TGPQGPIGQP--GPSGADGEPGPRGQ--------QGLFGQK 1212
Query: 151 LELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQ 210
+ PR P PV L P PP ++G G + PP P P+
Sbjct: 1213 GDEGPRGFPG----------PPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGA 1262
Query: 211 PGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGS 270
PG P P G G +G P + LPG P P +G + S
Sbjct: 1263 PGADGPQGPPGGI----GNPGAVGEKGE-PGEAGEPGLPGEGGPPGPKGERGEKGESGPS 1317
Query: 271 TAGRRPRPREPQAAE--ESGCATVGL-----RRGDCDRAGSSQPPATSG-NGERCRFCRR 322
A P P+ P + + VG G+ AG PP G +GE
Sbjct: 1318 GAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGE------- 1370
Query: 323 RRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPP 376
G G GP+ PPG+R R G +G++ L PP
Sbjct: 1371 ----PGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGE-KGAKGEAGLEGPP 1419
Score = 44.3 bits (103), Expect = 2e-04
Identities = 64/263 (24%), Positives = 84/263 (31%), Gaps = 39/263 (14%)
Query: 157 PPPNLQEGGQRAIFQRP---------PVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAP 207
P + QE +AI Q+ P+ L +P P GS G + + PQ
Sbjct: 537 PMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGV 596
Query: 208 APQPGPTAPPARPPAYES--------REGPRGRAESRGSG--PAQPAHLPLPGPAHSPAP 257
PGP P R S + GP+G G P + H PGP+ P P
Sbjct: 597 QGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGP 656
Query: 258 PAPELREG-------------RAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGS 304
P + G P G + P P +G +G+ G
Sbjct: 657 PGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGE 716
Query: 305 SQPPATSGNGERCRFCRRRRRRGGGGE-----GEGTHATHGPASPPGRRHDEEVGAAVLR 359
PP GN + G GE G G PPG H + G +
Sbjct: 717 PGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPG--HPGKEGPPGEK 774
Query: 360 AGSGEGSRRGLQLTPPPRRVHGA 382
G G +G P PR V GA
Sbjct: 775 GGQGPPGPQGPIGYPGPRGVKGA 797
Score = 38.5 bits (88), Expect = 0.013
Identities = 59/203 (29%), Positives = 74/203 (36%), Gaps = 22/203 (10%)
Query: 199 PLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPA--QPAHL----PLP-GP 251
P T++P+ + GP P + YE GPRG +G PA +P L P P GP
Sbjct: 419 PYYDPTSSPS-EIGPGMPANQDTIYEGIGGPRGEKGQKGE-PAIIEPGMLIEGPPGPEGP 476
Query: 252 AHSPAPPAPELREGRAPGSTAGRRP--RPREPQAAEESG----CATVGLRRGDCDRAGSS 305
A P PP G+ G R P RP P A G + R G AGS
Sbjct: 477 AGLPGPPGTMGPTGQV-GDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSK 535
Query: 306 QPPATSGNGERCRFCRRRRRRGGGGEGE-GTHATHGPASPPGRRHDEEVGAAVLRAGSGE 364
P ++ + ++ R G G G GP PPG G G
Sbjct: 536 GPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPG-----SGGLKGEPGDVGP 590
Query: 365 GSRRGLQLTPPPRRVHGALQRFG 387
RG+Q P P G R G
Sbjct: 591 QGPRGVQGPPGPAGKPGRRGRAG 613
Score = 37.7 bits (86), Expect = 0.022
Identities = 52/212 (24%), Positives = 69/212 (32%), Gaps = 45/212 (21%)
Query: 181 PTPPRQEGSFGGR----PKSQP--PLPQETAAPAPQPGPTAPPA---------------- 218
P PP +G G P+ P P P+ P PGP PP
Sbjct: 654 PGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGP 713
Query: 219 ----RPPAYESREGPRGRAESRGS----GPAQPAHLP-LPGPAHSPAPPAPELREGRAPG 269
PP + G +G +G+ G P P LPG + PP +EG PG
Sbjct: 714 QGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEG-PPG 772
Query: 270 STAGRRPRPRE-----PQAAEESGCATVGLRRGDCDRAGSSQPPATSGN----GERCRFC 320
G+ P + P G + +G G P G+ G+R
Sbjct: 773 EKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIG 832
Query: 321 RRRRRRGGGGEGE----GTHATHGPASPPGRR 348
R G EG G + GP PPG +
Sbjct: 833 PPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEK 864
Score = 36.2 bits (82), Expect = 0.064
Identities = 55/216 (25%), Positives = 74/216 (34%), Gaps = 39/216 (18%)
Query: 91 PVAKGSVPSEGRATPPLP--HPGDHHPRHRKNR-GPSAGTSQLGKKTQCRSLFLRTKGLC 147
P KG G+ P P PG P ++ GP+ + G+K KG
Sbjct: 1362 PGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKG--------AKGEA 1413
Query: 148 ALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAP 207
L E PP + G Q A + P L P P ++G G PP P
Sbjct: 1414 GL--EGPPGKTGPI--GPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGL 1469
Query: 208 APQPGPTAPPAR-----------PPAYESREGPRGRAESRGS----------GPAQPAHL 246
G + P PP + +G RG +GS GP+ P +
Sbjct: 1470 PGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGP--I 1527
Query: 247 PLPGPAHSPAPPAPELREGRA-PGSTAGRRPRPREP 281
PGP P PP P+ +G + P G P P
Sbjct: 1528 GPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGHPGPP 1563
Score = 32.3 bits (72), Expect = 0.93
Identities = 52/196 (26%), Positives = 66/196 (33%), Gaps = 52/196 (26%)
Query: 70 PKRSGDMGKYHAHGH-----LRAPVFPVAKGSVP-SEGRATPPLPHPGDHHPRHRKNRGP 123
P ++G +G A G LR PV + +P S G PP P P + + GP
Sbjct: 1419 PGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGP 1478
Query: 124 SAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTP 183
G+K GL L+ PP E G R +
Sbjct: 1479 K------GEKGH--------PGLIGLI-----GPPGEQGEKGDRGL-------------- 1505
Query: 184 PRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQP 243
P +GS G + + P P PG PP GP+G S SGP P
Sbjct: 1506 PGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPP----------GPKGAKGS--SGPTGP 1553
Query: 244 -AHLPLPGPAHSPAPP 258
PGP P PP
Sbjct: 1554 KGEAGHPGPPGPPGPP 1569
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 57.8 bits (138), Expect = 2e-08
Identities = 76/266 (28%), Positives = 91/266 (34%), Gaps = 50/266 (18%)
Query: 146 LCALLLELPPRPPPNLQEGGQRAIFQRPPVYL--GNKPTPPRQ--EGSFGGRPKSQPPLP 201
LC PRP P PVY G K P G G P P LP
Sbjct: 1233 LCQASFTTQPRPEPC-------------PVYCPKGQKGEPGEMGLRGQVG--PPGDPGLP 1277
Query: 202 QETAAPAPQPGPTAPPARP----PAYESREGPRGRAESRGS--GPAQPAHLPLPGPAHSP 255
T AP PQ P + A+ P + R G GRA + G+ P LPGP P
Sbjct: 1278 GRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDP 1337
Query: 256 APPAPELREGR--APGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGN 313
P +G APG G P P + G + RG G PP G
Sbjct: 1338 GERGPRGPKGEPGAPGQVIGGE-GPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGT 1396
Query: 314 GER-CRFCRRRRRRGGGGEG------------EGTHATHGPASPPGR---RHDEEVGAAV 357
+ + R R G GEG G+ GP PPG+ + D E GA
Sbjct: 1397 AMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPG 1456
Query: 358 LRAGSGEGSRRGLQLTPPPRRVHGAL 383
L G +G PR GA+
Sbjct: 1457 LPGQPGSPGEQG------PRGPPGAI 1476
Score = 52.8 bits (125), Expect = 7e-07
Identities = 96/381 (25%), Positives = 117/381 (30%), Gaps = 79/381 (20%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQ 129
P GD G+ G P P +G EG+ PG PR GP G
Sbjct: 2134 PGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGK-------PGLQGPRGPP--GPVGGHGD 2184
Query: 130 LGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQ----EGGQRAIFQRPPVYLGNKPTPPR 185
G G L P+ P L+ E G P P PP
Sbjct: 2185 PGPP-----------GAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPG 2233
Query: 186 QEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAH 245
G G P+ P LP Q G T P P R+G G+ RGS P P
Sbjct: 2234 PSGLVG--PQGSPGLPG-------QVGETGKPGAP----GRDGASGKDGDRGS-PGVPGS 2279
Query: 246 LPLPGPAHSPAPPAPELREGRA-------------PGSTAGRRPRPREPQAAEESGCATV 292
LPGP P P G+A PG AG EP A + G
Sbjct: 2280 PGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAG--DLVGEPGAKGDRGLPGP 2337
Query: 293 GLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEE 352
+G+ RAG P G + G G G + GP PPG + D
Sbjct: 2338 RGEKGEAGRAGEPGDPGEDGQKGA-----PGPKGFKGDPGVGVPGSPGPPGPPGVKGDLG 2392
Query: 353 V----GAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGA 408
+ GA + G+ RG P P G R L P R G
Sbjct: 2393 LPGLPGAPGVVGFPGQTGPRGEMGQPGP----------SGERGLAG-------PPGREGI 2435
Query: 409 SGPKMVADQTSGISRPPTAGI 429
GP + P +G+
Sbjct: 2436 PGPLGPPGPPGSVGPPGASGL 2456
Score = 48.5 bits (114), Expect = 1e-05
Identities = 54/205 (26%), Positives = 71/205 (34%), Gaps = 25/205 (12%)
Query: 178 GNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARP-PAYESREGPRGRAESR 236
G P P ++G G S PP P+ P PGP PP P A + +G RG
Sbjct: 1358 GEGPGLPGRKGDPG---PSGPPGPR---GPLGDPGPRGPPGLPGTAMKGDKGDRGERGPP 1411
Query: 237 GSG-----PAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESG--- 288
G G P +P LPG P P ++G S G P +P + E G
Sbjct: 1412 GPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRG 1471
Query: 289 -CATVGLR--------RGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATH 339
+G + G+ G PP +G+ R +G G G
Sbjct: 1472 PPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGP-PGPTGRQ 1530
Query: 340 GPASPPGRRHDEEVGAAVLRAGSGE 364
G PGR D V + GE
Sbjct: 1531 GEKGEPGRPGDPAVVGPAVAGPKGE 1555
Score = 48.1 bits (113), Expect = 2e-05
Identities = 67/257 (26%), Positives = 88/257 (34%), Gaps = 52/257 (20%)
Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNK-PTPPRQEGSFGGRPKSQ-------PPLPQE-- 203
PP PP L + G A + P G + P P+ + G P + PP PQ
Sbjct: 1701 PPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGDP 1760
Query: 204 -TAAPAPQPGPTAPPARP--------PAYESREGPRGRAESRGSG-----PAQPAHLPLP 249
PA + G PP P GP G A G P LP
Sbjct: 1761 GVRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQGLP 1820
Query: 250 GPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPA 309
GP+ P P +G+ PG G+ P +P E G R+G+ +G+S
Sbjct: 1821 GPSGPPGLPGKPGEDGK-PGLN-GKNGEPGDPG---EDG------RKGEKGDSGASGREG 1869
Query: 310 TSG-NGERCRFCRRRRRRGGGGEG----EGTHATHGPASPPGRRHDEEVGAAVLRAGSGE 364
G GER G G +G GP PPG+ G + GE
Sbjct: 1870 RDGPKGER------------GAPGILGPQGPPGLPGPVGPPGQGFPGVPGGTGPKGDRGE 1917
Query: 365 GSRRGLQLTPPPRRVHG 381
+G Q P R + G
Sbjct: 1918 TGSKGEQGLPGERGLRG 1934
Score = 42.4 bits (98), Expect = 9e-04
Identities = 59/214 (27%), Positives = 67/214 (31%), Gaps = 30/214 (14%)
Query: 154 PPRPPPNLQEGGQRAIFQRP--PVYLGNKPTPPRQE-GSFG-GRPKSQPPLPQETAAPA- 208
P PP G++ RP P +G P+ E G G P+ + E P
Sbjct: 1520 PEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGL 1579
Query: 209 ---PQPGPTAPPAR--PPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELR 263
PGP P P R GP G SGP P PG P P P R
Sbjct: 1580 VLPGDPGPKGDPGDRGPIGLTGRAGPPG-----DSGP--PGEKGDPGRPGPPGPVGPRGR 1632
Query: 264 EGRAPGSTAGRRPR--PREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCR 321
+G G P P P A E G RG G P G
Sbjct: 1633 DGEV-GEKGDEGPPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDG--------- 1682
Query: 322 RRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGA 355
R G +G GP PPGR D GA
Sbjct: 1683 -RNGSPGSSGPKGDRGEPGPPGPPGRLVDTGPGA 1715
Score = 37.4 bits (85), Expect = 0.029
Identities = 53/198 (26%), Positives = 64/198 (32%), Gaps = 23/198 (11%)
Query: 198 PPLPQETAAPAPQPGPTAPPARPPAY--ESREGPRGRAESRGSGPAQPAHLP--LPGPAH 253
PP P A +PG P R R G RG +G Q P LPG
Sbjct: 2026 PPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPG 2085
Query: 254 SPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGN 313
P PP P++ +G + P A E G GD G P G+
Sbjct: 2086 PPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPG------SNGDQGPKGDRGVPGIKGD 2139
Query: 314 -------GERCRFCRRRRRRGGGGEGE-GTHATHGPASPPGRRHDE-EVGAAVLRAGSGE 364
G+ R G EG+ G GP P G D GA L +G
Sbjct: 2140 RGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGP 2199
Query: 365 GSRRGLQLTP----PPRR 378
GL+ P PP R
Sbjct: 2200 QGPSGLKGEPGETGPPGR 2217
Score = 32.3 bits (72), Expect = 0.93
Identities = 55/220 (25%), Positives = 62/220 (28%), Gaps = 68/220 (30%)
Query: 181 PTPPRQEGSFGGRPKSQPP-------LPQETAAPAPQ--PGPTAPPA------RPP---- 221
P P R+ G G + PP P E + PGP PP PP
Sbjct: 1972 PVPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPSG 2031
Query: 222 --------------------AYESREGPRGRAESRG----SGPAQPAHLP-LPGPAHSPA 256
R G RG +G G P LP PGP P
Sbjct: 2032 LAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPGPPG 2091
Query: 257 P------PAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPAT 310
P P P L + P G + P G V +GD G P
Sbjct: 2092 PKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGD---RGEPGPRGQ 2148
Query: 311 SGN----GERCRFCRRRRRRGGGGEGEGTHATHGPASPPG 346
GN GER G EG GP PPG
Sbjct: 2149 DGNPGLPGER-----------GMAGPEGKPGLQGPRGPPG 2177
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 57.8 bits (138), Expect = 2e-08
Identities = 54/198 (27%), Positives = 76/198 (38%), Gaps = 36/198 (18%)
Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG- 212
P PPP +G ++ R P KP P +G G +P+ PP P + P PQ G
Sbjct: 159 PQGPPP---QGDNKSRSSRSPP---GKPQGPPPQG--GNQPQGPPPPPGKPQGPPPQGGN 210
Query: 213 -PTAPPARPPAYESREGPRG--RAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRAPG 269
P PP PP P+G +++S S P +P P P + P P P + + P
Sbjct: 211 KPQGPP--PPGKPQGPPPQGDNKSQSARSPPGKPQG-PPPQGGNQPQGPPPPPGKPQGPP 267
Query: 270 STAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGG 329
G +P+ P G Q P G G + R R + G
Sbjct: 268 PQGGNKPQGPPP--------------------PGKPQGPPPQG-GSKSRSSRSPPGKPQG 306
Query: 330 GEGEGTHATHGPASPPGR 347
+G + GP PPG+
Sbjct: 307 PPPQGGNQPQGPPPPPGK 324
Score = 55.5 bits (132), Expect = 1e-07
Identities = 57/204 (27%), Positives = 76/204 (37%), Gaps = 37/204 (18%)
Query: 148 ALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAP 207
+L+ P PP +GG + Q PP G PP Q G+ +P+ PP P + P
Sbjct: 30 SLIAGNPQGAPP---QGGNKP--QGPPSPPGKPQGPPPQGGN---QPQGPPPPPGKPQGP 81
Query: 208 APQPG--PTAPPARPPAYESREGPRG-RAESRGSGPAQPAHLPLPGPAHSPAPPAPELRE 264
PQ G P PP PP P+G ++ S S P +P P G PP P
Sbjct: 82 PPQGGNKPQGPP--PPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPP---- 135
Query: 265 GRAPGSTAGRRPR-PREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRR 323
PG G P+ +PQ G +GD S PP
Sbjct: 136 ---PGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPG-------------- 178
Query: 324 RRRGGGGEGEGTHATHGPASPPGR 347
+ G +G + GP PPG+
Sbjct: 179 --KPQGPPPQGGNQPQGPPPPPGK 200
Score = 55.1 bits (131), Expect = 1e-07
Identities = 51/180 (28%), Positives = 73/180 (40%), Gaps = 27/180 (15%)
Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG- 212
P PPP Q A + PP KP P +G G +P+ PP P + P PQ G
Sbjct: 221 PQGPPPQGDNKSQSA--RSPP----GKPQGPPPQG--GNQPQGPPPPPGKPQGPPPQGGN 272
Query: 213 -PTAPPARPPAYESREGPRGRAESRGS-GPAQPAHLPLPGPAHSPAPPAPELREGRAPGS 270
P PP PP P+G ++SR S P P P + P P P + + P
Sbjct: 273 KPQGPP--PPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPP 330
Query: 271 TAGRRPR----PREPQ-------AAEESGCATVGLRRGDCDRAGSS---QPPATSGNGER 316
G +P+ P +PQ + S + G +G + G++ PP GN ++
Sbjct: 331 QGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQ 390
Score = 54.3 bits (129), Expect = 2e-07
Identities = 55/196 (28%), Positives = 67/196 (34%), Gaps = 20/196 (10%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQ 129
P GD A P P +G +G PP G K +GP
Sbjct: 224 PPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP 283
Query: 130 LGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGS 189
G Q S ++ P PPP +GG + Q PP G PP Q
Sbjct: 284 QGPPPQGGSKSRSSRSPPGK----PQGPPP---QGGNQP--QGPPPPPGKPQGPPPQ--- 331
Query: 190 FGGRPKSQPPLPQETAAPAPQPGPTA-----PPARPPAYESREG--PRGRAESRGSGPAQ 242
GG PP P + P PQ G + PP +P +EG P+G G P Q
Sbjct: 332 -GGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQ 390
Query: 243 PAHLPLPGPAHSPAPP 258
P P P P PP
Sbjct: 391 PQAPPAGQPQGPPRPP 406
Score = 48.5 bits (114), Expect = 1e-05
Identities = 68/276 (24%), Positives = 92/276 (33%), Gaps = 55/276 (19%)
Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKS-QPPLPQETAAPAPQPG 212
P PPP +G + + PP G PP Q GG PP P + P PQ G
Sbjct: 98 PQGPPP---QGDKSRSPRSPP---GKPQGPPPQ----GGNQPQGPPPPPGKPQGPPPQGG 147
Query: 213 --PTAPPARPPAYESREGPRGRAESRGS-GPAQPAHLPLPGPAHSPAPPAPELREGRAPG 269
P PP PP P+G +SR S P P P + P P P + + P
Sbjct: 148 NKPQGPP--PPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP 205
Query: 270 STAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGG 329
G +P+ P G Q P G+ + + R + G
Sbjct: 206 PQGGNKPQGPPP--------------------PGKPQGPPPQGD-NKSQSARSPPGKPQG 244
Query: 330 GEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGG 389
+G + GP PPG+ G Q PPP + G + GG
Sbjct: 245 PPPQGGNQPQGPPPPPGKPQ-----------GPPPQGGNKPQGPPPPGKPQGPPPQ-GGS 292
Query: 390 RNLKSNWMSTTRTPRRSGASGPKMVADQTSGISRPP 425
++ S R+P P +Q G PP
Sbjct: 293 KSRSS------RSPPGKPQGPPPQGGNQPQGPPPPP 322
Score = 32.0 bits (71), Expect = 1.2
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 15/77 (19%)
Query: 154 PPRPPPNLQEGGQRAIFQR--------PPVYLGNKPT-PPRQEGSFGGRPKSQPPLPQET 204
P PPP +GG ++ R PP GN P PP G +P++ PP Q
Sbjct: 345 PQGPPP---QGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQA-PPAGQPQ 400
Query: 205 AAPAPQPGPTAPPARPP 221
P P G P+RPP
Sbjct: 401 GPPRPPQG--GRPSRPP 415
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 57.8 bits (138), Expect = 2e-08
Identities = 69/295 (23%), Positives = 106/295 (35%), Gaps = 47/295 (15%)
Query: 54 AADIIARWSAQHSMTNPKRSGDMGKYHAHGHLRAPVFPVAKGSV-------PSEGRATPP 106
AAD + + Q+ N + S D G + R V G V PS + P
Sbjct: 475 AADSVQQ-RRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSP 533
Query: 107 LPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQ 166
+ PR R+ R PS ++ + R + P PPP +
Sbjct: 534 RKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSP 593
Query: 167 RAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESR 226
R PP+ P+PP + R S PP P+ A+P+P P + PP S
Sbjct: 594 RRY--SPPIQRRYSPSPPPKR-----RTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSS 646
Query: 227 EGPRGRAES------RGSGPAQP---AHLPLPGPAHSPAP-------------------P 258
+ R+ S +GS P++ A P P HSP+P
Sbjct: 647 PVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASS 706
Query: 259 APELREGRAPGSTAGRR----PRPREPQAAEESGCATVGLRRGDCDRAGSSQPPA 309
+P+ R+ +P + RR P P++ + A +V +GS +P A
Sbjct: 707 SPQRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAA 761
Score = 48.5 bits (114), Expect = 1e-05
Identities = 53/212 (25%), Positives = 78/212 (36%), Gaps = 32/212 (15%)
Query: 116 RHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPV 175
RH +R S + K+T R R+ P PPP + +R+ PP
Sbjct: 522 RHSPSRSASPSPRKRQKETSPRGRRRRS-----------PSPPPTRR---RRSPSPAPPP 567
Query: 176 YLGNKPTPPRQEGSFGGRPKSQPPLPQETAAP-----APQPGP---TAPPARPPAYESRE 227
PTPP + + P+ + P P+ + P +P P P TA P PP +
Sbjct: 568 RRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASP 627
Query: 228 GPRGRAESRGSGPAQPAHLP--------LPGPAHSPAPPAPELREGRAPGSTAGRRPRPR 279
P + S P + P L + P+ RE R+P P PR
Sbjct: 628 SPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPR 687
Query: 280 EPQAAEESGCATVGLRRGDCDRAGSSQPPATS 311
P+A + S + +RRG Q P+ S
Sbjct: 688 -PRAPQTSS-SPPPVRRGASSSPQRRQSPSPS 717
Score = 44.3 bits (103), Expect = 2e-04
Identities = 65/261 (24%), Positives = 93/261 (35%), Gaps = 43/261 (16%)
Query: 156 RPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG--- 212
RP P + +R + PP + P R R +S L +++ +
Sbjct: 314 RPSPRRRPSPRR---RTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSP 370
Query: 213 PTAPPAR---PPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPP-APELREGR-- 266
P PP R PP R P R P+ PA P P HSP P + R+ R
Sbjct: 371 PKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPA-TPPPKTRHSPTPQQSNRTRKSRVS 429
Query: 267 -APGSTAGR---------------RPRPREPQAAEESG------CATVGLRRGDCDRAGS 304
+PG T+G+ P+PR+ + +E A +++ R +
Sbjct: 430 VSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAAADSVQQRRQYRRQN 489
Query: 305 SQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGP---ASPPGRRHDEEVGAAVLRAG 361
Q + SG+ R +R GE G H P ASP R+ +E R
Sbjct: 490 QQSSSDSGSSSSSEDERPKRSHVKNGE-VGRRRRHSPSRSASPSPRKRQKETSPRGRRRR 548
Query: 362 SGE----GSRRGLQLTPPPRR 378
S RR PPPRR
Sbjct: 549 SPSPPPTRRRRSPSPAPPPRR 569
Score = 37.4 bits (85), Expect = 0.029
Identities = 88/406 (21%), Positives = 131/406 (32%), Gaps = 92/406 (22%)
Query: 98 PSEGRATPP--LPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPP 155
PS R TPP +P P PRHR++R P ++ SL + + PP
Sbjct: 321 PSPRRRTPPRRMPPP----PRHRRSRSPVRR-----RRRSSASLSGSSSSSSSSRSRSPP 371
Query: 156 RPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTA 215
+ PP R + P +PPR+ P + PP P+ +P PQ
Sbjct: 372 KKPPKRTSSPPRKTRRLSP-----SASPPRRRHR--PSPPATPP-PKTRHSPTPQQSNRT 423
Query: 216 PPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGR--APGSTAG 273
+R R G+ + + P P P + E + G+ A S
Sbjct: 424 RKSRVSVSPGRTS--GKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAAADSVQQ 481
Query: 274 RRP-RPREPQAAEESGCAT----------------VGLRRGDCDRAGSSQPPA-----TS 311
RR R + Q++ +SG ++ VG RR +S P TS
Sbjct: 482 RRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETS 541
Query: 312 GNGERCRFCR----RRRRRGGGGEGEGTHAT----------------------------- 338
G R R RRRR T
Sbjct: 542 PRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQ 601
Query: 339 --HGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGAL----------QRF 386
+ P+ PP RR RA +R + +PPP++ + +
Sbjct: 602 RRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHR 661
Query: 387 GGGRNLKSNWMSTTRTPRRSGASGPKMVADQTSGISRPPTAGIGTS 432
G +S + + P + + P+ A QTS S PP G S
Sbjct: 662 KGSSPSRSTREARSPQPNKRHSPSPRPRAPQTS--SSPPPVRRGAS 705
Score = 34.7 bits (78), Expect = 0.19
Identities = 60/263 (22%), Positives = 84/263 (31%), Gaps = 62/263 (23%)
Query: 179 NKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGS 238
+K +E S R +S+ P +++ +P+P+ ++P R PR R +SR
Sbjct: 152 DKRDKEEKESSREKRERSRSPRRRKSRSPSPRRR-SSPVRRERKRSHSRSPRHRTKSRSP 210
Query: 239 GPA------------------QPA-----------HLPLPGPAHSPAPPAPEL------- 262
PA +P+ +P P P P P+PE
Sbjct: 211 SPAPEKKEKTPELPEPSVKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKE 270
Query: 263 REGRAPGS---------TAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSS----QPPA 309
+E P S T R P P+ S + RR R S PP
Sbjct: 271 KEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPR 330
Query: 310 TSGNGERCRFCR---RRRRR------GGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRA 360
R R R RRRRR G + + P PP R L
Sbjct: 331 RMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSP 390
Query: 361 GSGEGSRR---GLQLTPPPRRVH 380
+ RR TPPP+ H
Sbjct: 391 SASPPRRRHRPSPPATPPPKTRH 413
Score = 30.4 bits (67), Expect = 3.5
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 16/93 (17%)
Query: 184 PRQEGSFGGRPK-----SQPPLPQETAAPAPQ----PGPTAPPAR-------PPAYESRE 227
P + S RP+ S PP + A+ +PQ P P+ P R P +
Sbjct: 678 PNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAA 737
Query: 228 GPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAP 260
P ++ R S + P P PAPP+P
Sbjct: 738 SPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSP 770
>gi|22027541 programmed cell death 7 [Homo sapiens]
Length = 485
Score = 57.0 bits (136), Expect = 4e-08
Identities = 46/127 (36%), Positives = 53/127 (41%), Gaps = 26/127 (20%)
Query: 155 PRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPT 214
P PPP Q PP P PP +F PPLPQ P P PG +
Sbjct: 12 PGPPPP----------QPPPPAPFGCPPPPLPSPAF------PPPLPQR---PGPFPGAS 52
Query: 215 APPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGR 274
AP +PP PR AE+ G A P+P P PP P+ R PG+ AG
Sbjct: 53 APFLQPPLALQ---PRASAEASRGGGGAGAFYPVPPPPLP--PPPPQCRP--FPGTDAGE 105
Query: 275 RPRPREP 281
RPRP P
Sbjct: 106 RPRPPPP 112
Score = 38.9 bits (89), Expect = 0.010
Identities = 45/148 (30%), Positives = 54/148 (36%), Gaps = 39/148 (26%)
Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPP---RQEGSFGGR--PKSQPPLPQETAAPA 208
PP+PPP A F PP L + PP ++ G F G P QPPL + A A
Sbjct: 16 PPQPPPP-------APFGCPPPPLPSPAFPPPLPQRPGPFPGASAPFLQPPLALQPRASA 68
Query: 209 ----------------PQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPA 252
P P P PP P + G R R G GP P
Sbjct: 69 EASRGGGGAGAFYPVPPPPLPPPPPQCRPFPGTDAGERPRPPPPGPGPPWSPRWP----- 123
Query: 253 HSPAPPAPELREGRAPGSTAGRRPRPRE 280
+P PPA L G A +R R R+
Sbjct: 124 EAPPPPADVL------GDAALQRLRDRQ 145
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 56.6 bits (135), Expect = 5e-08
Identities = 93/343 (27%), Positives = 121/343 (35%), Gaps = 48/343 (13%)
Query: 99 SEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPP 158
+ GR P PG P R++ PS + + ++ GL LL LPP P
Sbjct: 1505 TSGRGPPSEDGPGVPPPSPRRSVPPSPTSPRASEEN----------GLP--LLVLPPPAP 1552
Query: 159 PNLQEGGQRAIFQ--RPPVYLGN---KPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGP 213
E G+ + PP+ N KP P G P P P A P P P
Sbjct: 1553 SVDVEDGEFLFVEPLPPPLEFSNSFEKPESPLTPGP--PHPLPDTPAP---ATPLPPVPP 1607
Query: 214 TAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAG 273
A A PP +S +S + Q A PG H P PPAP A + A
Sbjct: 1608 PAVAAAPPTLDSTASSLTSYDSEVATLTQGAS-AAPGDPHPPGPPAP------AAPAPAA 1660
Query: 274 RRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGE 333
+P P +P +SG V R+ S P T + GGG G
Sbjct: 1661 PQPGP-DPPPGTDSGIEEVD------SRSSSDHPLETISSAST---LSSLSAEGGGSAGG 1710
Query: 334 GTHATHGPASPPG--RRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGR- 390
G A G AS P + + S G QL P + AL GG R
Sbjct: 1711 GGGAGAGVASGPELLDTYVAYLDGQAFGGSSTPGPPYPPQLMTPSKLRGRALGASGGLRP 1770
Query: 391 ----NLKSNWMSTTRTPRRSGASGPKMVADQTSGISRPPTAGI 429
L+ T+ T +GA ++A S PPTAG+
Sbjct: 1771 GPSGGLRDPVTPTSPTVSVTGAGTDGLLA--LRACSGPPTAGV 1811
Score = 51.6 bits (122), Expect = 1e-06
Identities = 80/298 (26%), Positives = 107/298 (35%), Gaps = 73/298 (24%)
Query: 139 LFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQP 198
L LR K + A + P PP ++ F R G++ PP S P S P
Sbjct: 884 LMLRQKSIGAAEDDRPYLAPPAMK-------FSRSLSVPGSEDIPPPPTTSPPEPPYSTP 936
Query: 199 PLPQETA--APAPQPGPTAP------PARPPA-YESREGPRGRAESRG-----SGPAQPA 244
P+P + P+P+ GP P PA PA ++ P R SR SGP PA
Sbjct: 937 PVPSSSGRLTPSPRGGPFNPGSGGPLPASSPASFDGPSPPDTRVGSREKSLYHSGPLPPA 996
Query: 245 ----------HLPLPGP----AHSPAP-------------------PAPELR--EGRAPG 269
H P P P AH P P P P LR G P
Sbjct: 997 HHHPPHHHHHHAPPPQPHHHHAHPPHPPEMETGGSPDDPPPRLALGPQPSLRGWRGGGPS 1056
Query: 270 STAGRRPRPREPQAAEESGCATVG--LRRGDC-DRAGSS--QPPATSGNGERCRFCRRRR 324
T G P P +A G ++ G LR RA S+ PA SG G + ++ +
Sbjct: 1057 PTPG-APSPSHHGSAGGGGGSSQGPALRYFQLPPRAASAAMYVPARSGRGRKGPLVKQTK 1115
Query: 325 RRGGGGEGEGTHATHGPASP-----------PGRRHDEEVGAAVLRAGSGEGSRRGLQ 371
G +G G P SP P ++ + +++A S S R Q
Sbjct: 1116 VEGEPQKGGGLPPAPSPTSPASPQPPPAVAAPSEKNSIPIPTIIIKAPSTSSSGRSSQ 1173
Score = 49.7 bits (117), Expect = 6e-06
Identities = 77/300 (25%), Positives = 99/300 (33%), Gaps = 77/300 (25%)
Query: 102 RATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPR-PPPN 160
R P P PG P H + G G+SQ G +LPPR
Sbjct: 1051 RGGGPSPTPGAPSPSHHGSAGGGGGSSQ---------------GPALRYFQLPPRAASAA 1095
Query: 161 LQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPAR- 219
+ + ++ P+ K Q+G GG P + P P A+P P P AP +
Sbjct: 1096 MYVPARSGRGRKGPLVKQTKVEGEPQKG--GGLPPA--PSPTSPASPQPPPAVAAPSEKN 1151
Query: 220 -----------PPAYESREGPRGRAESRGSGPAQP---------AHLPLPGPAHSPAPPA 259
P S +G + + P QP P P PA SP PP+
Sbjct: 1152 SIPIPTIIIKAPSTSSSGRSSQG-SSTEAEPPTQPEPTGGGGGGGSSPSPAPAMSPVPPS 1210
Query: 260 PELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRF 319
P +P T P + G A VG R R G Q A
Sbjct: 1211 P------SPVPTPASPSGPATLDFTSQFGAALVGAAR----REGGWQNEA---------- 1250
Query: 320 CRRRRR---------RGGGGEGEGTHATHGPASPPGRRHDEEVGAA-----VLRAGSGEG 365
RRR GG G GT A GP + DE + +A + AGSG G
Sbjct: 1251 -RRRSTLFLSTDAGDEDGGDGGLGTGAAPGPRLRHSKSIDEGMFSAEPYLRLESAGSGAG 1309
Score = 38.9 bits (89), Expect = 0.010
Identities = 55/213 (25%), Positives = 69/213 (32%), Gaps = 49/213 (23%)
Query: 114 HPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRP 173
HP K P+ S LG R L+ + PPRPP E
Sbjct: 1340 HPLTGKALDPA---SPLGLALAARERALKESSEGGGAPQPPPRPPSPRYEAPPPTPHHHS 1396
Query: 174 P---------VYLGNKPTPPRQE----GSFGGRPKSQPPLP--------QETAAPAPQPG 212
P ++ + P P R+E G + KS P P AP G
Sbjct: 1397 PHAHHEPVLRLWGASPPDPARRELGYRAGLGSQEKSLPASPPAARRSLLHRLPPTAPGVG 1456
Query: 213 P------TAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGR 266
P T PPA P R + P +P LPL P + GR
Sbjct: 1457 PLLLQLGTEPPAPHPGVSK--------PWRSAAPEEPERLPLHVRFLENCQPRAPVTSGR 1508
Query: 267 APGSTAG--------RR---PRPREPQAAEESG 288
P S G RR P P P+A+EE+G
Sbjct: 1509 GPPSEDGPGVPPPSPRRSVPPSPTSPRASEENG 1541
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 56.6 bits (135), Expect = 5e-08
Identities = 78/296 (26%), Positives = 100/296 (33%), Gaps = 42/296 (14%)
Query: 88 PVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLC 147
P P KG+ P+ ATPP P G P + P A T K KG
Sbjct: 1071 PATPSLKGA-PTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATP---PHKGAP 1126
Query: 148 ALLLELPPRPPPNL----QEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQ- 202
PP P L +G PP G TPP + P + PP P+
Sbjct: 1127 TTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAP--TTPAATPPSPKG 1184
Query: 203 ETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPEL 262
A P+P+ PT P A PP S +G +G+ P PA P P P A P+P+
Sbjct: 1185 GLATPSPKGAPTTPAATPP---SPKGGLATPSPKGA-PTTPAATP-PSPKGGLATPSPK- 1238
Query: 263 REGRAPGSTAGRRPRPR-EPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCR 321
AP + A P P+ P G T + G + PP
Sbjct: 1239 ---GAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPP------------- 1282
Query: 322 RRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPR 377
+G A P SP G A + S +G TPPP+
Sbjct: 1283 --------HKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPK 1330
Score = 54.3 bits (129), Expect = 2e-07
Identities = 69/250 (27%), Positives = 88/250 (35%), Gaps = 45/250 (18%)
Query: 91 PVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALL 150
P KG+ P+ ATPP P G P + P A T K KG
Sbjct: 1235 PSPKGA-PTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPH---KGAPNPA 1290
Query: 151 LELPPRPPPNLQEGGQRAIFQRPPVYLGNKP--TPPRQEGSFGGRPKSQPPLPQETAAPA 208
+ PP P +GG PP P TPP +GS G P P P P+
Sbjct: 1291 VVTPPSP-----KGGPAT---SPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPS 1342
Query: 209 PQPGPTAPPARPPAYESREGPRGRAESRGSGP--AQPAH-----LPLPGPAHSPAPPAPE 261
P+ PT P P S+ GP + G P A P+H + P P PA P+P+
Sbjct: 1343 PKGTPTLPATTP---SSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPK 1399
Query: 262 ----------LREGRAPGSTAGRRPRPREPQAAEESGCAT------VGLRRGDCDRAGSS 305
L +AP + P RE A G T V L++ A
Sbjct: 1400 GDPTSPAVIPLSPKKAPAT-----PVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKG 1454
Query: 306 QPPATSGNGE 315
P S G+
Sbjct: 1455 GPATPSSKGD 1464
Score = 48.9 bits (115), Expect = 1e-05
Identities = 62/239 (25%), Positives = 83/239 (34%), Gaps = 29/239 (12%)
Query: 87 APVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGL 146
AP+ P A P G ATP PH G P G + KG
Sbjct: 1102 APMPPAATPPSPKGGLATP--PHKGAPTTPAATPPSPKGGLAT-----------PPPKGA 1148
Query: 147 CALLLELPPRPPPNL----QEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQ 202
PP P L +G PP G TP + P + PP P+
Sbjct: 1149 PTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAP--TTPAATPPSPK 1206
Query: 203 -ETAAPAPQPGPTAPPARPPAYE---SREGPRGRAESRGSGPAQPAHLP-LPGPAHSPAP 257
A P+P+ PT P A PP+ + + P+G + + P P P P P +P P
Sbjct: 1207 GGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTP 1266
Query: 258 PA---PELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGN 313
PA P L+ G A G P P G +G ++ PP+ G+
Sbjct: 1267 PAATPPSLKGGLATPPHKG-APNPAVVTPPSPKGGPATSPPKG-APTPPAATPPSPKGS 1323
Score = 47.8 bits (112), Expect = 2e-05
Identities = 72/300 (24%), Positives = 99/300 (33%), Gaps = 71/300 (23%)
Query: 88 PVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLC 147
P P KG+ P+ ATPP P G P + P A T
Sbjct: 931 PASPSPKGA-PTPPAATPPSPKGGPATPSPKWAPTPPAAT-------------------- 969
Query: 148 ALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQE-TAA 206
PP P +GG P P +G+ P + PP P+ A
Sbjct: 970 ------PPSP-----KGG---------------PATPSPKGA-PTPPAATPPSPKGGPAT 1002
Query: 207 PAPQPGPTAPPARPPAYESREG----PRGRAESRGSGP----AQPAHLPLP-GPAHSPAP 257
P+P+ PT P PP+ + P+G + + P PA PLP G +PA
Sbjct: 1003 PSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAA 1062
Query: 258 PAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERC 317
P + G A S G P + + G AT + G+ PPA + +
Sbjct: 1063 TLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPK-------GAPMPPAATPPSPKG 1115
Query: 318 RFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPR 377
+ G T P SP G A + S +G TPPP+
Sbjct: 1116 GLATPPHK------GAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPK 1169
Score = 45.4 bits (106), Expect = 1e-04
Identities = 65/255 (25%), Positives = 86/255 (33%), Gaps = 37/255 (14%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPVAKGSVPS-----EGRATPPLPHPGDHHPRHRKNRGPS 124
P + G G G+L +PV PV +P +G P P + PS
Sbjct: 809 PTKKGSAGPDTPIGNLSSPVSPVEASFLPENSLSFQGSKDSPATTHSPTPPSPKGAPTPS 868
Query: 125 AGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNL---QEGGQRAIFQRPPVYLGNKP 181
A T L KG+ E P NL +EG ++ P
Sbjct: 869 AVTP------------LSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSS 916
Query: 182 TPPRQEGSFGGRPKSQPPLPQETAAPAPQ----PGPTAPPARPPAYESREGPRGRAESRG 237
+P + + PK P P AP P P P PA P + P S
Sbjct: 917 SPKKARAT--PAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPK 974
Query: 238 SGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPR-EPQAAEESGCATVGLRR 296
GPA P+ P P PA P + G A S G P P + + S AT +
Sbjct: 975 GGPATPSPKGAPTP---PAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPK- 1030
Query: 297 GDCDRAGSSQPPATS 311
G+S PPA +
Sbjct: 1031 ------GASTPPAAT 1039
Score = 45.4 bits (106), Expect = 1e-04
Identities = 79/316 (25%), Positives = 100/316 (31%), Gaps = 54/316 (17%)
Query: 87 APVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGL 146
AP P A P G ATPP P+ + S G KG
Sbjct: 1148 APTTPAATPPSPKGGLATPP--------PKGAPTTPAATPPSPKGGLAT-----PSPKGA 1194
Query: 147 CALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFG-GRPKSQPPLPQETA 205
PP P L + P TPP +G PK P P T
Sbjct: 1195 PTTPAATPPSPKGGLATPSPKGAPTTPAA------TPPSPKGGLATPSPKGAPTTPAAT- 1247
Query: 206 APAPQPGPTAPPAR----PPAYESREGPRGRAESRGSGPAQPAHL----PLPGPAHSP-- 255
P+P+ GP PP + PPA G A G PA + P GPA SP
Sbjct: 1248 PPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPK 1307
Query: 256 --------APPAPELREGRAPGSTAGRRP--RPREPQAAEESGCATVGLRRG---DCDRA 302
PP+P+ G P A P P P+ T + G +
Sbjct: 1308 GAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKE 1367
Query: 303 GSSQPPATSGNGERCRFCRRRRRRG---GGGEGEGTHATHGPASPPGRRHDEEVGAAVLR 359
G + P AT + +RG +G+ T P SP + V R
Sbjct: 1368 GPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSP-----KKAPATPVTR 1422
Query: 360 AGSGEGSRRGLQLTPP 375
G+ S+ LTPP
Sbjct: 1423 EGAATPSKG--DLTPP 1436
Score = 37.4 bits (85), Expect = 0.029
Identities = 32/109 (29%), Positives = 41/109 (37%), Gaps = 11/109 (10%)
Query: 194 PKSQPPLPQETAAPAPQPGPTA--PPA-RPPAYESREGPRG-------RAESRGSGPAQP 243
PK P +P APA A PPA P Y+ P+ + S P P
Sbjct: 1558 PKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPP 1617
Query: 244 AHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATV 292
A P P P PA PAP+ P + + + P P + ATV
Sbjct: 1618 AVTP-PSPEKGPATPAPKGTPTSPPVTPSSLKDSPTSPASVTCKMGATV 1665
Score = 32.7 bits (73), Expect = 0.71
Identities = 44/185 (23%), Positives = 62/185 (33%), Gaps = 31/185 (16%)
Query: 87 APVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGL 146
AP P S P E ATP R P A T+ L K +L + +
Sbjct: 1502 APTLPAVIPSSPKEVPATPS------------SRRDPIAPTATLLSKKTPATLAPKEALI 1549
Query: 147 CALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPL-PQETA 205
+ P+ P + + P + P P ++ G P + L P
Sbjct: 1550 PPAMTVPSPKKTPAIPTPKEAPA--TPSSKEASSP-PAVTPSTYKGAPSPKELLIPPAVT 1606
Query: 206 APAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREG 265
+P+P+ PT P PP+ E GPA PA P P P P+
Sbjct: 1607 SPSPKEAPTPPAVTPPSPE-------------KGPATPA--PKGTPTSPPVTPSSLKDSP 1651
Query: 266 RAPGS 270
+P S
Sbjct: 1652 TSPAS 1656
Score = 31.6 bits (70), Expect = 1.6
Identities = 54/221 (24%), Positives = 76/221 (34%), Gaps = 28/221 (12%)
Query: 96 SVPSEGRATPPLPHPGDHH--PRHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLEL 153
+VPS + TP +P P + P ++ P A T K L + + +
Sbjct: 1554 TVPSP-KKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTSPSPKE 1612
Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQ--- 210
P PP ++ P G +PP S P S + + A PQ
Sbjct: 1613 APTPPAVTPPSPEKG--PATPAPKGTPTSPPVTPSSLKDSPTSPASVTCKMGATVPQASK 1670
Query: 211 -----PGPTA--PPARPPAYES--------REGPRGRAESRGSGPAQP---AHLPLPGPA 252
GPTA PA ES R+GP+ + S S P P A GP
Sbjct: 1671 GLPAKKGPTALKEVLVAPAPESTPIITAPTRKGPQTKKSSATSPPICPDPSAKNGSKGPL 1730
Query: 253 H--SPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCAT 291
+PAP P ++ P+ P A ES +T
Sbjct: 1731 STVAPAPLLPVQKDSSKTAKGKDASHSPKGPLAPPESKAST 1771
Score = 30.0 bits (66), Expect = 4.6
Identities = 25/93 (26%), Positives = 34/93 (36%), Gaps = 6/93 (6%)
Query: 181 PTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGP 240
P P +G P PP P+E AP Q ++ P + PA P G P
Sbjct: 1456 PATPSSKGD-PTLPAVTPPSPKEPPAP-KQVATSSSPKKAPA---TPAPMGAPTLPAVIP 1510
Query: 241 AQPAHLP-LPGPAHSPAPPAPELREGRAPGSTA 272
+ P +P P P P L + P + A
Sbjct: 1511 SSPKEVPATPSSRRDPIAPTATLLSKKTPATLA 1543
Score = 29.6 bits (65), Expect = 6.0
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 205 AAPAPQPGPTAPPARPPAYESREGPRGRAESRG--SGPAQPAHLPLP--------GPAHS 254
A P+ + PT P PP+ + P+ A S PA PA + P P
Sbjct: 1457 ATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKEV 1516
Query: 255 PAPPAPELREGRAPGSTAGRRPRP 278
PA P+ R+ AP +T + P
Sbjct: 1517 PATPSSR-RDPIAPTATLLSKKTP 1539
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 55.5 bits (132), Expect = 1e-07
Identities = 65/221 (29%), Positives = 82/221 (37%), Gaps = 24/221 (10%)
Query: 152 ELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQP 211
E P PP L G ++F P P ++G G K P LP E +P
Sbjct: 323 EAGPAGPPGLP--GTTSLFTP-------HPRMPGEQGPKG--EKGDPGLPGEPGLQG-RP 370
Query: 212 GPTAP--PARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSP-APPAPELREGRAP 268
G P P PP + +EG G + G+ P P H+ PGP+ P + AP LR
Sbjct: 371 GELGPQGPTGPPGAKGQEGAHGAPGAAGN-PGAPGHVGAPGPSGPPGSVGAPGLR----- 424
Query: 269 GSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGG 328
T G+ E AA E G RGD G PP +GE R G
Sbjct: 425 -GTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKDGE--PGLRGSPGLPG 481
Query: 329 GGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRRG 369
+G G PG R D +G A SG +G
Sbjct: 482 PLGTKGDRGAPGIPGSPGSRGDPGIGVAGPPGPSGPPGDKG 522
Score = 43.9 bits (102), Expect = 3e-04
Identities = 50/181 (27%), Positives = 64/181 (35%), Gaps = 28/181 (15%)
Query: 170 FQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARP--PAYESRE 227
F PP GN P PP +G G + PP Q + PGP P P P E +E
Sbjct: 640 FMGPP---GN-PGPPGADGIAGA---AGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKE 692
Query: 228 GPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEES 287
G G+ P P PG A P P PE R P G P ES
Sbjct: 693 GRDGK-------PGPPGE---PGKAGEPGLPGPE--GARGPPGFKGHTGDSGAPGPRGES 740
Query: 288 GCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGR 347
G + + G + G + P G + R G G+ GP+ PG+
Sbjct: 741 GAMGLPGQEGLPGKDGDTGPTGPQGP-------QGPRGPPGKNGSPGSPGEPGPSGTPGQ 793
Query: 348 R 348
+
Sbjct: 794 K 794
Score = 42.7 bits (99), Expect = 7e-04
Identities = 47/165 (28%), Positives = 54/165 (32%), Gaps = 21/165 (12%)
Query: 184 PRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARP--PAYESREGPRGRAESRGSGPA 241
P QEG G + P PQ P PG P P P G +G GS P
Sbjct: 746 PGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGS-PG 804
Query: 242 QPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDR 301
P L GP P +EG PG +P EP E RGD
Sbjct: 805 LPGFLGPRGPPGEPGEKGVPGKEG-VPG-------KPGEPGFKGE---------RGDPGI 847
Query: 302 AGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPG 346
G PP G + G G +G +GP PPG
Sbjct: 848 KGDKGPPGGKGQPGDPGIPGHKGHTGLMGP-QGLPGENGPVGPPG 891
Score = 40.0 bits (92), Expect = 0.004
Identities = 38/129 (29%), Positives = 46/129 (35%), Gaps = 9/129 (6%)
Query: 158 PPNLQEGGQRAIFQRPPVYLGNKPTP--PRQEGSFGGRPKSQPPLPQETAAPAPQPGPTA 215
PP +Q + + PP G P P +EG G K PP A PGP
Sbjct: 661 PPGIQGSPGK---EGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEG 717
Query: 216 PPARPPAYESREGPRGRAESRGSGPAQ--PAHLPLPGPAHSPAPPAPELREG-RAPGSTA 272
PP ++ G G RG A P LPG P P+ +G R P
Sbjct: 718 ARG-PPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKN 776
Query: 273 GRRPRPREP 281
G P EP
Sbjct: 777 GSPGSPGEP 785
Score = 37.4 bits (85), Expect = 0.029
Identities = 50/201 (24%), Positives = 66/201 (32%), Gaps = 37/201 (18%)
Query: 185 RQEGSFGGRPKSQPPLPQETAAPAP-QPGPTAPPARP--PAYESREGPRG---------- 231
R E G+P + + ++ A P + G P P P +G +G
Sbjct: 255 RGEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGELGLPGL 314
Query: 232 ---RAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESG 288
R E +GPA P LP +P P R PG G + +P E G
Sbjct: 315 KGDRGEKGEAGPAGPPGLPGTTSLFTPHP--------RMPGE-QGPKGEKGDPGLPGEPG 365
Query: 289 CATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRR 348
R G+ G + PP G G G GP+ PPG
Sbjct: 366 LQG---RPGELGPQGPTGPPGAKGQ----EGAHGAPGAAGNPGAPGHVGAPGPSGPPG-- 416
Query: 349 HDEEVGAAVLRAGSGEGSRRG 369
VGA LR G+ RG
Sbjct: 417 ---SVGAPGLRGTPGKDGERG 434
Score = 37.4 bits (85), Expect = 0.029
Identities = 94/376 (25%), Positives = 118/376 (31%), Gaps = 91/376 (24%)
Query: 72 RSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLG 131
R G+ G+ G AP FP +G +G L PG R K AG L
Sbjct: 278 RPGEKGEAGLPG---APGFPGVRGEKGDQGEKGE-LGLPGLKGDRGEKGEAGPAGPPGLP 333
Query: 132 KKTQCRSLFLRTKGLCALLLELPPRPPPNLQEG-----GQRAIFQRPPVYLGNKPTPPR- 185
T SLF +P P ++G G+ + RP PT P
Sbjct: 334 GTT---SLFTPHP-------RMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPTGPPG 383
Query: 186 ---QEGSFGGRPKS-QPPLPQETAAPAPQ--PGPTAPPAR--PPAYESREGPRGRAESRG 237
QEG+ G + P P AP P PG P P + G +G A G
Sbjct: 384 AKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEG 443
Query: 238 S-GPAQPAHLP----LPGPAHSPAPPAPELREGRA---PGSTAGRRPRPREPQAAEESGC 289
S GP P P LPGP P LR P T G R P P + G
Sbjct: 444 SPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSPGLPGPLGTKGDRGAPGIPGSPGSRGD 503
Query: 290 ATVGLRRGDCDRAGSSQPPATSGN-GER-------------------------------- 316
+G+ G S PP G+ G R
Sbjct: 504 PGIGV----AGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGLSSLLSPGDINLLAKD 559
Query: 317 -CRFCRR-----------RRRRGGGGEG--EGTHATHGPASPPGRRHDEEV----GAAVL 358
C C + +G G+ EGT G A PPG + G+
Sbjct: 560 VCNDCPPGPPGLPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPGIAGPQGSQGE 619
Query: 359 RAGSGEGSRRGLQLTP 374
R GE ++G Q P
Sbjct: 620 RGADGEVGQKGDQGHP 635
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 54.7 bits (130), Expect = 2e-07
Identities = 39/109 (35%), Positives = 41/109 (37%), Gaps = 5/109 (4%)
Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQ--P 211
PP PPP L G PP G P S PPLP+ P+P P
Sbjct: 605 PPPPPPPLPGG---VCISSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGVGIPSPSSLP 661
Query: 212 GPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAP 260
G TA P PP S P GS P PLPG A P PP P
Sbjct: 662 GGTAIPPPPPLPGSARIPPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPP 710
Score = 45.4 bits (106), Expect = 1e-04
Identities = 43/125 (34%), Positives = 46/125 (36%), Gaps = 21/125 (16%)
Query: 157 PPPNLQEG----------GQRAIFQRPPVYLGNK--PTPPRQEGSFGGRPKSQPPLPQET 204
PPP L EG G AI PP+ + P PP GS G P PPLP E
Sbjct: 644 PPPPLPEGVGIPSPSSLPGGTAIPPPPPLPGSARIPPPPPPLPGS-AGIPPPPPPLPGEA 702
Query: 205 AAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPA-HLPLPGPAHSPAPPAPELR 263
P P P P PP GP G P P +P P P P AP L
Sbjct: 703 GMPPPPPPLPGGPGIPPPPPFPGGP-------GIPPPPPGMGMPPPPPFGFGVPAAPVLP 755
Query: 264 EGRAP 268
G P
Sbjct: 756 FGLTP 760
Score = 42.7 bits (99), Expect = 7e-04
Identities = 44/144 (30%), Positives = 48/144 (33%), Gaps = 26/144 (18%)
Query: 153 LPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQ-- 210
+PP PP G PP G+ TPP P PPLP +P
Sbjct: 573 VPPAPPLP----GDSGTIIPPPPAPGDSTTPPPPPPP----PPPPPPLPGGVCISSPPSL 624
Query: 211 PGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHL----------PLPGPAHSPAPPAP 260
PG TA PP P G G P+ L PLPG A P PP P
Sbjct: 625 PGGTAISPPPPLSGDATIPPPPPLPEGVGIPSPSSLPGGTAIPPPPPLPGSARIPPPPPP 684
Query: 261 ELREGRAPGSTAGRRPRPREPQAA 284
PGS P P P A
Sbjct: 685 ------LPGSAGIPPPPPPLPGEA 702
Score = 37.7 bits (86), Expect = 0.022
Identities = 36/114 (31%), Positives = 38/114 (33%), Gaps = 14/114 (12%)
Query: 173 PPVYLGNKPTPPRQE-GSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRG 231
PP P PP G PP P ++ P P P P PP P P
Sbjct: 564 PPSVPSRAPVPPAPPLPGDSGTIIPPPPAPGDSTTPPPPPPPPPPPPPLPGGVCISSP-- 621
Query: 232 RAESRGSGPAQPAHLPLPGPAHSPAPPAPELREG-------RAPGSTAGRRPRP 278
S G A PL G A PP P L EG PG TA P P
Sbjct: 622 --PSLPGGTAISPPPPLSGDA--TIPPPPPLPEGVGIPSPSSLPGGTAIPPPPP 671
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 54.7 bits (130), Expect = 2e-07
Identities = 39/109 (35%), Positives = 41/109 (37%), Gaps = 5/109 (4%)
Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQ--P 211
PP PPP L G PP G P S PPLP+ P+P P
Sbjct: 614 PPPPPPPLPGG---VCISSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGVGIPSPSSLP 670
Query: 212 GPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAP 260
G TA P PP S P GS P PLPG A P PP P
Sbjct: 671 GGTAIPPPPPLPGSARIPPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPP 719
Score = 45.4 bits (106), Expect = 1e-04
Identities = 43/125 (34%), Positives = 46/125 (36%), Gaps = 21/125 (16%)
Query: 157 PPPNLQEG----------GQRAIFQRPPVYLGNK--PTPPRQEGSFGGRPKSQPPLPQET 204
PPP L EG G AI PP+ + P PP GS G P PPLP E
Sbjct: 653 PPPPLPEGVGIPSPSSLPGGTAIPPPPPLPGSARIPPPPPPLPGS-AGIPPPPPPLPGEA 711
Query: 205 AAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPA-HLPLPGPAHSPAPPAPELR 263
P P P P PP GP G P P +P P P P AP L
Sbjct: 712 GMPPPPPPLPGGPGIPPPPPFPGGP-------GIPPPPPGMGMPPPPPFGFGVPAAPVLP 764
Query: 264 EGRAP 268
G P
Sbjct: 765 FGLTP 769
Score = 42.7 bits (99), Expect = 7e-04
Identities = 44/144 (30%), Positives = 48/144 (33%), Gaps = 26/144 (18%)
Query: 153 LPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQ-- 210
+PP PP G PP G+ TPP P PPLP +P
Sbjct: 582 VPPAPPLP----GDSGTIIPPPPAPGDSTTPPPPPPP----PPPPPPLPGGVCISSPPSL 633
Query: 211 PGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHL----------PLPGPAHSPAPPAP 260
PG TA PP P G G P+ L PLPG A P PP P
Sbjct: 634 PGGTAISPPPPLSGDATIPPPPPLPEGVGIPSPSSLPGGTAIPPPPPLPGSARIPPPPPP 693
Query: 261 ELREGRAPGSTAGRRPRPREPQAA 284
PGS P P P A
Sbjct: 694 ------LPGSAGIPPPPPPLPGEA 711
Score = 37.7 bits (86), Expect = 0.022
Identities = 36/114 (31%), Positives = 38/114 (33%), Gaps = 14/114 (12%)
Query: 173 PPVYLGNKPTPPRQE-GSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRG 231
PP P PP G PP P ++ P P P P PP P P
Sbjct: 573 PPSVPSRAPVPPAPPLPGDSGTIIPPPPAPGDSTTPPPPPPPPPPPPPLPGGVCISSP-- 630
Query: 232 RAESRGSGPAQPAHLPLPGPAHSPAPPAPELREG-------RAPGSTAGRRPRP 278
S G A PL G A PP P L EG PG TA P P
Sbjct: 631 --PSLPGGTAISPPPPLSGDA--TIPPPPPLPEGVGIPSPSSLPGGTAIPPPPP 680
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 54.7 bits (130), Expect = 2e-07
Identities = 63/232 (27%), Positives = 79/232 (34%), Gaps = 31/232 (13%)
Query: 91 PVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKT-QCRSLFLRTKGL--- 146
P +GS P G P P PG P NRG + G + + S F L
Sbjct: 198 PHNRGSPPVPGG--PRQPSPGPTPPPFPGNRGTALGGGSIRQSPLSSSSPFSNRPPLPPT 255
Query: 147 -CALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETA 205
L + PP PPP + RP ++ P PP Q +P +
Sbjct: 256 PSRALDDKPPPPPP--------PVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAP 307
Query: 206 APAPQPGPTAPPARPPAYESR-EGPRGRAESRGSGPAQPAHLPLPGPAHS-PAPPAPELR 263
P P P PP PP+ E PR + + P PLP P S P PP P R
Sbjct: 308 PPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTP---PLPSPGRSGPLPPPPSER 364
Query: 264 EGRAPGSTAGRR-PRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNG 314
GR P P P + R G RA + P S +G
Sbjct: 365 PPPPVRDPPGRSGPLPPPPPVS----------RNGSTSRALPATPQLPSRSG 406
Score = 47.8 bits (112), Expect = 2e-05
Identities = 93/389 (23%), Positives = 121/389 (31%), Gaps = 100/389 (25%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPV------AKGSVPSEGRATPPLPHPGDHH--PRHRKNR 121
PK + + G R P+ P AK P G P+P PG P ++NR
Sbjct: 109 PKLRSTANRDNDSGGSRPPLLPPGGRSTSAKPFSPPSGPGRFPVPSPGHRSGPPEPQRNR 168
Query: 122 GPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKP 181
P PPRP + G + PPV P
Sbjct: 169 MP------------------------------PPRP-----DVGSKPDSIPPPV-----P 188
Query: 182 TPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPA 241
+ PR S + PP+P P+P GPT PP G RG A GS
Sbjct: 189 STPRPIQS-SPHNRGSPPVPGGPRQPSP--GPTPPPF--------PGNRGTALGGGSIRQ 237
Query: 242 QPAHLPLPGPAHSPAPPAPELR---EGRAPGSTAGRRP---------------RPREPQA 283
P P P PP P + P G RP +P P
Sbjct: 238 SPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPST 297
Query: 284 AEESGCATVGLRRGDCDRAGSSQ-PPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPA 342
S + R G PP++SGN E R +R + GP
Sbjct: 298 PRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPL 357
Query: 343 SPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRT 402
PP E +R G R G PPP +G+ R +T +
Sbjct: 358 PPP----PSERPPPPVRDPPG---RSGPLPPPPPVSRNGSTSR---------ALPATPQL 401
Query: 403 PRRSGASGPK------MVADQTSGISRPP 425
P RSG P+ + D+ S + PP
Sbjct: 402 PSRSGVDSPRSGPRPPLPPDRPSAGAPPP 430
Score = 43.9 bits (102), Expect = 3e-04
Identities = 57/208 (27%), Positives = 71/208 (34%), Gaps = 58/208 (27%)
Query: 86 RAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKG 145
+ P P G+ PS R P P P ++ P PSA +
Sbjct: 263 KPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASS------------------ 304
Query: 146 LCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTP--PRQEGSFG---------GRP 194
+ PP PPP + G PP GN TP P++ S GR
Sbjct: 305 ------QAPPPPPPPSRPGPPPL----PPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRS 354
Query: 195 KSQPPLPQETAAPAPQPGP-TAPPARPPAYESREGPRGRA-------------ESRGSGP 240
PP P E P + P + P PP SR G RA +S SGP
Sbjct: 355 GPLPPPPSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQLPSRSGVDSPRSGP 414
Query: 241 AQPAHLPLPGP---AHSPAPPAPELREG 265
P LP P A P PP+ +R G
Sbjct: 415 RPP--LPPDRPSAGAPPPPPPSTSIRNG 440
Score = 42.0 bits (97), Expect = 0.001
Identities = 47/202 (23%), Positives = 68/202 (33%), Gaps = 29/202 (14%)
Query: 191 GGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPG 250
GG ++ P + TA G + PP PP G R + S P+ P P+P
Sbjct: 101 GGLFQAGMPKLRSTANRDNDSGGSRPPLLPP------GGRSTSAKPFSPPSGPGRFPVPS 154
Query: 251 PAHSPAPPAPELREGRAPGSTAGRRPR------PREPQAAEES--GCATVGLRRGDCDRA 302
P H PP P+ P G +P P P+ + S + + G +
Sbjct: 155 PGHRSGPPEPQRNRMPPPRPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPS 214
Query: 303 GSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPAS-------PPGRRHDEEVGA 355
PP GN R GGG + ++ P S P R D++
Sbjct: 215 PGPTPPPFPGN--------RGTALGGGSIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPP 266
Query: 356 AVLRAGSGEGSRRGLQLTPPPR 377
G+ R PPP+
Sbjct: 267 PPPPVGNRPSIHREAVPPPPPQ 288
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 54.7 bits (130), Expect = 2e-07
Identities = 63/232 (27%), Positives = 79/232 (34%), Gaps = 31/232 (13%)
Query: 91 PVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKT-QCRSLFLRTKGL--- 146
P +GS P G P P PG P NRG + G + + S F L
Sbjct: 198 PHNRGSPPVPGG--PRQPSPGPTPPPFPGNRGTALGGGSIRQSPLSSSSPFSNRPPLPPT 255
Query: 147 -CALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETA 205
L + PP PPP + RP ++ P PP Q +P +
Sbjct: 256 PSRALDDKPPPPPP--------PVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAP 307
Query: 206 APAPQPGPTAPPARPPAYESR-EGPRGRAESRGSGPAQPAHLPLPGPAHS-PAPPAPELR 263
P P P PP PP+ E PR + + P PLP P S P PP P R
Sbjct: 308 PPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTP---PLPSPGRSGPLPPPPSER 364
Query: 264 EGRAPGSTAGRR-PRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNG 314
GR P P P + R G RA + P S +G
Sbjct: 365 PPPPVRDPPGRSGPLPPPPPVS----------RNGSTSRALPATPQLPSRSG 406
Score = 47.8 bits (112), Expect = 2e-05
Identities = 93/389 (23%), Positives = 121/389 (31%), Gaps = 100/389 (25%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPV------AKGSVPSEGRATPPLPHPGDHH--PRHRKNR 121
PK + + G R P+ P AK P G P+P PG P ++NR
Sbjct: 109 PKLRSTANRDNDSGGSRPPLLPPGGRSTSAKPFSPPSGPGRFPVPSPGHRSGPPEPQRNR 168
Query: 122 GPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKP 181
P PPRP + G + PPV P
Sbjct: 169 MP------------------------------PPRP-----DVGSKPDSIPPPV-----P 188
Query: 182 TPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPA 241
+ PR S + PP+P P+P GPT PP G RG A GS
Sbjct: 189 STPRPIQS-SPHNRGSPPVPGGPRQPSP--GPTPPPF--------PGNRGTALGGGSIRQ 237
Query: 242 QPAHLPLPGPAHSPAPPAPELR---EGRAPGSTAGRRP---------------RPREPQA 283
P P P PP P + P G RP +P P
Sbjct: 238 SPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPST 297
Query: 284 AEESGCATVGLRRGDCDRAGSSQ-PPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPA 342
S + R G PP++SGN E R +R + GP
Sbjct: 298 PRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPL 357
Query: 343 SPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRT 402
PP E +R G R G PPP +G+ R +T +
Sbjct: 358 PPP----PSERPPPPVRDPPG---RSGPLPPPPPVSRNGSTSR---------ALPATPQL 401
Query: 403 PRRSGASGPK------MVADQTSGISRPP 425
P RSG P+ + D+ S + PP
Sbjct: 402 PSRSGVDSPRSGPRPPLPPDRPSAGAPPP 430
Score = 43.9 bits (102), Expect = 3e-04
Identities = 57/208 (27%), Positives = 71/208 (34%), Gaps = 58/208 (27%)
Query: 86 RAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRKNRGPSAGTSQLGKKTQCRSLFLRTKG 145
+ P P G+ PS R P P P ++ P PSA +
Sbjct: 263 KPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASS------------------ 304
Query: 146 LCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTP--PRQEGSFG---------GRP 194
+ PP PPP + G PP GN TP P++ S GR
Sbjct: 305 ------QAPPPPPPPSRPGPPPL----PPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRS 354
Query: 195 KSQPPLPQETAAPAPQPGP-TAPPARPPAYESREGPRGRA-------------ESRGSGP 240
PP P E P + P + P PP SR G RA +S SGP
Sbjct: 355 GPLPPPPSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQLPSRSGVDSPRSGP 414
Query: 241 AQPAHLPLPGP---AHSPAPPAPELREG 265
P LP P A P PP+ +R G
Sbjct: 415 RPP--LPPDRPSAGAPPPPPPSTSIRNG 440
Score = 42.0 bits (97), Expect = 0.001
Identities = 47/202 (23%), Positives = 68/202 (33%), Gaps = 29/202 (14%)
Query: 191 GGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPG 250
GG ++ P + TA G + PP PP G R + S P+ P P+P
Sbjct: 101 GGLFQAGMPKLRSTANRDNDSGGSRPPLLPP------GGRSTSAKPFSPPSGPGRFPVPS 154
Query: 251 PAHSPAPPAPELREGRAPGSTAGRRPR------PREPQAAEES--GCATVGLRRGDCDRA 302
P H PP P+ P G +P P P+ + S + + G +
Sbjct: 155 PGHRSGPPEPQRNRMPPPRPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPS 214
Query: 303 GSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPAS-------PPGRRHDEEVGA 355
PP GN R GGG + ++ P S P R D++
Sbjct: 215 PGPTPPPFPGN--------RGTALGGGSIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPP 266
Query: 356 AVLRAGSGEGSRRGLQLTPPPR 377
G+ R PPP+
Sbjct: 267 PPPPVGNRPSIHREAVPPPPPQ 288
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 54.7 bits (130), Expect = 2e-07
Identities = 61/206 (29%), Positives = 78/206 (37%), Gaps = 29/206 (14%)
Query: 123 PSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPT 182
PS G LG++T + G A P PP G QR Q PP L +P
Sbjct: 437 PSPGALPLGRQTS-----QQPAGPPAQQRPPPQGGPPQPGPGPQR---QGPP--LQQRPP 486
Query: 183 PPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSG--- 239
P Q+ G P + PLPQ +P P A A PP +G + R + G G
Sbjct: 487 PQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPT--QGQGRQSRPVAGGPGAPP 544
Query: 240 ----PAQPAHLPLPGPAH-----SPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCA 290
PA P+ GP S + PAP G PG + P + P A G
Sbjct: 545 AARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPA---GPT 601
Query: 291 TVGLRRGDCDRAG--SSQPPATSGNG 314
+ G R G ++Q P SG G
Sbjct: 602 RQASQAGPVPRTGPPTTQQPRPSGPG 627
Score = 47.8 bits (112), Expect = 2e-05
Identities = 63/266 (23%), Positives = 89/266 (33%), Gaps = 65/266 (24%)
Query: 182 TPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARP----PAYESREGPRGRAESRG 237
TP G + QP P P PQ GP P P P + R P+G+ G
Sbjct: 436 TPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSG 495
Query: 238 SGPAQPAHLP--LPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLR 295
GP + LP LP P +P PA + P GR+ RP
Sbjct: 496 LGPPAGSPLPQRLPSPTSAPQQPA---SQAAPPTQGQGRQSRP----------------V 536
Query: 296 RGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPA------SPPGRRH 349
G +++PPA+ +R+ G + + GPA +PPG +
Sbjct: 537 AGGPGAPPAARPPASPS----------PQRQAGPPQATRQTSVSGPAPPKASGAPPGGQ- 585
Query: 350 DEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGAS 409
+ G G +R+ Q P PR TT+ PR SG
Sbjct: 586 -QRQGPPQKPPGPAGPTRQASQAGPVPR-----------------TGPPTTQQPRPSGPG 627
Query: 410 -----GPKMVADQTSGISRPPTAGIG 430
P++ + + P TA G
Sbjct: 628 PAGRPKPQLAQKPSQDVPPPATAAAG 653
Score = 47.4 bits (111), Expect = 3e-05
Identities = 60/225 (26%), Positives = 83/225 (36%), Gaps = 39/225 (17%)
Query: 91 PVAKGSVPSEG----RATPPLPH-PGDHHPRHRKNRGPSAGT-----------------S 128
P +G P G R PPL P +H GP AG+ S
Sbjct: 461 PPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPAS 520
Query: 129 QLGKKTQCRSLFLR--TKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQ 186
Q TQ + R G A PP P ++ G ++ V + P PP+
Sbjct: 521 QAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSV---SGPAPPKA 577
Query: 187 EGSFGGR-----PKSQPPLPQETAAPAPQPGP---TAPPARPPAYESREGPRGRAESR-G 237
G+ G P +PP P A Q GP T PP S GP GR + +
Sbjct: 578 SGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQLA 637
Query: 238 SGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQ 282
P+Q +P P A + PP P+L + ++ + A P P P+
Sbjct: 638 QKPSQ--DVPPPATAAAGGPPHPQLNKSQSL-TNAFNLPEPAPPR 679
Score = 30.0 bits (66), Expect = 4.6
Identities = 29/93 (31%), Positives = 35/93 (37%), Gaps = 15/93 (16%)
Query: 209 PQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRAP 268
PQP P P A P + GP R SG A PA SPA P+P G
Sbjct: 28 PQPPPPPPGAHSPG--ATPGPGTATAERSSGVA---------PAASPAAPSPGSSGGGGF 76
Query: 269 GSTAGRRPRPREPQAA----EESGCATVGLRRG 297
S+ + AA E+ G + G RG
Sbjct: 77 FSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRG 109
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 54.7 bits (130), Expect = 2e-07
Identities = 61/206 (29%), Positives = 78/206 (37%), Gaps = 29/206 (14%)
Query: 123 PSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPT 182
PS G LG++T + G A P PP G QR Q PP L +P
Sbjct: 437 PSPGALPLGRQTS-----QQPAGPPAQQRPPPQGGPPQPGPGPQR---QGPP--LQQRPP 486
Query: 183 PPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSG--- 239
P Q+ G P + PLPQ +P P A A PP +G + R + G G
Sbjct: 487 PQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPT--QGQGRQSRPVAGGPGAPP 544
Query: 240 ----PAQPAHLPLPGPAH-----SPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCA 290
PA P+ GP S + PAP G PG + P + P A G
Sbjct: 545 AARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPA---GPT 601
Query: 291 TVGLRRGDCDRAG--SSQPPATSGNG 314
+ G R G ++Q P SG G
Sbjct: 602 RQASQAGPVPRTGPPTTQQPRPSGPG 627
Score = 47.8 bits (112), Expect = 2e-05
Identities = 63/266 (23%), Positives = 89/266 (33%), Gaps = 65/266 (24%)
Query: 182 TPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARP----PAYESREGPRGRAESRG 237
TP G + QP P P PQ GP P P P + R P+G+ G
Sbjct: 436 TPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSG 495
Query: 238 SGPAQPAHLP--LPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLR 295
GP + LP LP P +P PA + P GR+ RP
Sbjct: 496 LGPPAGSPLPQRLPSPTSAPQQPA---SQAAPPTQGQGRQSRP----------------V 536
Query: 296 RGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPA------SPPGRRH 349
G +++PPA+ +R+ G + + GPA +PPG +
Sbjct: 537 AGGPGAPPAARPPASPS----------PQRQAGPPQATRQTSVSGPAPPKASGAPPGGQ- 585
Query: 350 DEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGAS 409
+ G G +R+ Q P PR TT+ PR SG
Sbjct: 586 -QRQGPPQKPPGPAGPTRQASQAGPVPR-----------------TGPPTTQQPRPSGPG 627
Query: 410 -----GPKMVADQTSGISRPPTAGIG 430
P++ + + P TA G
Sbjct: 628 PAGRPKPQLAQKPSQDVPPPATAAAG 653
Score = 45.4 bits (106), Expect = 1e-04
Identities = 57/210 (27%), Positives = 76/210 (36%), Gaps = 38/210 (18%)
Query: 91 PVAKGSVPSEG----RATPPLPH-PGDHHPRHRKNRGPSAGT-----------------S 128
P +G P G R PPL P +H GP AG+ S
Sbjct: 461 PPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPAS 520
Query: 129 QLGKKTQCRSLFLR--TKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQ 186
Q TQ + R G A PP P ++ G ++ V + P PP+
Sbjct: 521 QAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSV---SGPAPPKA 577
Query: 187 EGSFGGR-----PKSQPPLPQETAAPAPQPGP---TAPPARPPAYESREGPRGRAESR-G 237
G+ G P +PP P A Q GP T PP S GP GR + +
Sbjct: 578 SGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQLA 637
Query: 238 SGPAQPAHLPLPGPAHSPAPPAPELREGRA 267
P+Q +P P A + PP P+L+ A
Sbjct: 638 QKPSQ--DVPPPATAAAGGPPHPQLKASPA 665
Score = 30.0 bits (66), Expect = 4.6
Identities = 29/93 (31%), Positives = 35/93 (37%), Gaps = 15/93 (16%)
Query: 209 PQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRAP 268
PQP P P A P + GP R SG A PA SPA P+P G
Sbjct: 28 PQPPPPPPGAHSPG--ATPGPGTATAERSSGVA---------PAASPAAPSPGSSGGGGF 76
Query: 269 GSTAGRRPRPREPQAA----EESGCATVGLRRG 297
S+ + AA E+ G + G RG
Sbjct: 77 FSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRG 109
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
sapiens]
Length = 1636
Score = 54.7 bits (130), Expect = 2e-07
Identities = 55/163 (33%), Positives = 68/163 (41%), Gaps = 19/163 (11%)
Query: 154 PPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAA-PAPQPG 212
PP+ P L +P V +P PP + G +Q PLP + A P P PG
Sbjct: 985 PPQAPGLLPPQSPYPYAPQPGVL--GQPPPPLHTQLYPG--PAQDPLPAHSGALPFPSPG 1040
Query: 213 PTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHS-PAPPAPELREGRAPGST 271
P PP P AY GP +R GP Q A L + GP+ + + P+P L AP
Sbjct: 1041 PPQPPHPPLAY----GPA--PSTRPMGP-QAAPLTIRGPSSAGQSTPSPHLVPSPAPSPG 1093
Query: 272 AGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNG 314
G P P P AAE C LRRG S P + G
Sbjct: 1094 PG--PVPPRPPAAEPPPC----LRRGAAAADLLSSSPESQHGG 1130
Score = 50.8 bits (120), Expect = 3e-06
Identities = 46/127 (36%), Positives = 53/127 (41%), Gaps = 23/127 (18%)
Query: 173 PPVYLGNKPTP---PRQEGSFGGRPKSQP-PLPQETAAPAPQPGPTAPPARPPAYESREG 228
P +G +P P P +FG +P QP PL P PG PP P Y + G
Sbjct: 947 PAPRIGPQPQPHPQPHPSQAFGPQPPQQPLPLQHPHLFPPQAPG-LLPPQSPYPYAPQPG 1005
Query: 229 PRGRA-----ESRGSGPAQ---PAH---LPLPGPAHSPAPPAPELREGRAPGSTAGRRPR 277
G+ GPAQ PAH LP P P P PP P L G AP + R
Sbjct: 1006 VLGQPPPPLHTQLYPGPAQDPLPAHSGALPFPSPG-PPQPPHPPLAYGPAPST------R 1058
Query: 278 PREPQAA 284
P PQAA
Sbjct: 1059 PMGPQAA 1065
Score = 41.2 bits (95), Expect = 0.002
Identities = 41/153 (26%), Positives = 47/153 (30%), Gaps = 32/153 (20%)
Query: 153 LPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPG 212
LP PPP F P + + +P + P P P T AP P
Sbjct: 860 LPSAPPPQ---------FSGPELAMAVRPATTTVDSIQAPIPSHTAPRPNPTPAPPPPCF 910
Query: 213 PTAPPAR-PPAYESREG---------------PRGRAESRGSGPAQPAHLPLPGPAHSPA 256
P PP P Y G P G R QP P P A P
Sbjct: 911 PVPPPQPLPTPYTYPAGAKQPIPAQHHFSSGIPAGFPAPRIGPQPQPHPQPHPSQAFGPQ 970
Query: 257 PPA-------PELREGRAPGSTAGRRPRPREPQ 282
PP P L +APG + P P PQ
Sbjct: 971 PPQQPLPLQHPHLFPPQAPGLLPPQSPYPYAPQ 1003
Score = 37.4 bits (85), Expect = 0.029
Identities = 39/146 (26%), Positives = 48/146 (32%), Gaps = 33/146 (22%)
Query: 156 RPPPNLQEGGQRAIFQRP-PVYLG-------NKPTPPRQEGSFGGRPKSQP--------- 198
+PPP L Q P P + G P PP ++G P ++P
Sbjct: 1009 QPPPPLHTQLYPGPAQDPLPAHSGALPFPSPGPPQPPHPPLAYGPAPSTRPMGPQAAPLT 1068
Query: 199 -----------PLPQETAAPAPQPGPTAPPARPPAYES----REGPRGRAESRGSGPAQP 243
P P +PAP PGP P RPPA E R G S +Q
Sbjct: 1069 IRGPSSAGQSTPSPHLVPSPAPSPGPGPVPPRPPAAEPPPCLRRGAAAADLLSSSPESQH 1128
Query: 244 AHLPLPGPAHSPAPPAP-ELREGRAP 268
PG P + EGR P
Sbjct: 1129 GGTQSPGGGQPLLQPTKVDAAEGRRP 1154
Score = 34.3 bits (77), Expect = 0.24
Identities = 41/143 (28%), Positives = 45/143 (31%), Gaps = 29/143 (20%)
Query: 173 PPVYLGNKPTPPRQEGS----FGGRPKSQPPLPQETAA------------------PAPQ 210
PP KP PR+E S G P+ LP + A P+P
Sbjct: 717 PPRPTAPKPLLPRREESEAVEAGDPPEELRSLPPDMVAGPRLPDTFLGSATPLHFPPSPF 776
Query: 211 PGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGS 270
P T P P Y S P G SGP Q PGP P P P L A
Sbjct: 777 PSSTGPG---PHYLSGPLPPGTY----SGPTQLIQPRAPGPHAMPVAPGPALYPAPAYTP 829
Query: 271 TAGRRPRPREPQAAEESGCATVG 293
G PR S VG
Sbjct: 830 ELGLVPRSSPQHGVVSSPYVGVG 852
Score = 32.0 bits (71), Expect = 1.2
Identities = 22/65 (33%), Positives = 23/65 (35%), Gaps = 7/65 (10%)
Query: 208 APQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLP-GPAHSPAPPAPELREGR 266
A PGP PP PPA P S P PLP P PP PE
Sbjct: 1518 ASLPGPAEPPGLPPASLPESTP------IPSSSPPPLSSPLPEAPQPKEEPPVPEAPSSG 1571
Query: 267 APGST 271
P S+
Sbjct: 1572 PPSSS 1576
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 54.7 bits (130), Expect = 2e-07
Identities = 88/329 (26%), Positives = 111/329 (33%), Gaps = 58/329 (17%)
Query: 70 PKRSGDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPP-------LPH-PGDHHPRHRKNR 121
P G G+ G P P +G + +G A P LP PG P R +
Sbjct: 761 PGPPGTKGEPGERGEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPG--FPGVRGEK 818
Query: 122 GPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKP 181
G +LG KG E P PP L G ++F P
Sbjct: 819 GDQGEKGELGLPG--------LKGDRGEKGEAGPAGPPGLP--GTTSLFTP-------HP 861
Query: 182 TPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAP--PARPPAYESREGPRGRAESRGSG 239
P ++G G K P LP E +PG P P PP + +EG G + G+
Sbjct: 862 RMPGEQGPKG--EKGDPGLPGEPGLQG-RPGELGPQGPTGPPGAKGQEGAHGAPGAAGN- 917
Query: 240 PAQPAHLPLPGPAHSPAPP-APELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGD 298
P P H+ PGP+ P AP LR T G+ E AA E G RGD
Sbjct: 918 PGAPGHVGAPGPSGPPGSVGAPGLR------GTPGKDGERGEKGAAGEEGSPGPVGPRGD 971
Query: 299 CDRAGSSQPPATSGNGE-----------------RCRFCRRRRRRGGGGE-GEGTHATHG 340
G PP +GE C R GG+ +G G
Sbjct: 972 PGAPGLPGPPGKGKDGEPGLRGSPGLPGPLGTKAACGKVRGSENCALGGQCVKGDRGAPG 1031
Query: 341 PASPPGRRHDEEVGAAVLRAGSGEGSRRG 369
PG R D +G A SG +G
Sbjct: 1032 IPGSPGSRGDPGIGVAGPPGPSGPPGDKG 1060
Score = 50.4 bits (119), Expect = 3e-06
Identities = 95/364 (26%), Positives = 120/364 (32%), Gaps = 81/364 (22%)
Query: 74 GDMGKYHAHGHLRAPVFPVAKGSVPSEGRATPPLPHPGDHHPRHRK-NRGPSAGTSQLGK 132
G+ G GH AP P A+G + EGR P PG R +K + GP LG
Sbjct: 657 GEQGAPGPRGHQGAPGPPGARGPIGPEGRDGP----PGLQGLRGKKGDMGPPGIPGLLG- 711
Query: 133 KTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPVYLGNKPTPPRQEGSFGG 192
L+ PP PP G G P P + G F G
Sbjct: 712 ------------------LQGPPGPPGVPGPPGP-----------GGSPGLPGEIG-FPG 741
Query: 193 RPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPA 252
+P PP P P + GP PP PP + G RG G P + G A
Sbjct: 742 KP--GPPGP---TGPPGKDGPNGPPG-PPGTKGEPGERGEDGLPGK-PGLRGEIGEQGLA 794
Query: 253 HSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLR--RGDCDRAGSSQPPAT 310
P E E PG+ R + E+ GL+ RG+ AG + PP
Sbjct: 795 GRPG----EKGEAGLPGAPGFPGVRGEKGDQGEKGELGLPGLKGDRGEKGEAGPAGPPGL 850
Query: 311 SGNGERCRFCRRRRRRG-GGGEGE----------------GTHATHGPASPPGRRHDEEV 353
G F R G G +GE G GP PPG + E
Sbjct: 851 PGT--TSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPTGPPGAKGQE-- 906
Query: 354 GAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFGGGRNLKSNWMSTTRTPRRSGASGPKM 413
GA +G G P P G++ G L+ TP + G G K
Sbjct: 907 GAHGAPGAAGNPGAPGHVGAPGPSGPPGSV----GAPGLRG-------TPGKDGERGEKG 955
Query: 414 VADQ 417
A +
Sbjct: 956 AAGE 959
Score = 43.9 bits (102), Expect = 3e-04
Identities = 50/181 (27%), Positives = 64/181 (35%), Gaps = 28/181 (15%)
Query: 170 FQRPPVYLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARP--PAYESRE 227
F PP GN P PP +G G + PP Q + PGP P P P E +E
Sbjct: 1193 FMGPP---GN-PGPPGADGIAGA---AGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKE 1245
Query: 228 GPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEES 287
G G+ P P PG A P P PE R P G P ES
Sbjct: 1246 GRDGK-------PGPPGE---PGKAGEPGLPGPE--GARGPPGFKGHTGDSGAPGPRGES 1293
Query: 288 GCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGR 347
G + + G + G + P G + R G G+ GP+ PG+
Sbjct: 1294 GAMGLPGQEGLPGKDGDTGPTGPQGP-------QGPRGPPGKNGSPGSPGEPGPSGTPGQ 1346
Query: 348 R 348
+
Sbjct: 1347 K 1347
Score = 42.7 bits (99), Expect = 7e-04
Identities = 47/165 (28%), Positives = 54/165 (32%), Gaps = 21/165 (12%)
Query: 184 PRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARP--PAYESREGPRGRAESRGSGPA 241
P QEG G + P PQ P PG P P P G +G GS P
Sbjct: 1299 PGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGS-PG 1357
Query: 242 QPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDR 301
P L GP P +EG PG +P EP E RGD
Sbjct: 1358 LPGFLGPRGPPGEPGEKGVPGKEG-VPG-------KPGEPGFKGE---------RGDPGI 1400
Query: 302 AGSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPG 346
G PP G + G G +G +GP PPG
Sbjct: 1401 KGDKGPPGGKGQPGDPGIPGHKGHTGLMGP-QGLPGENGPVGPPG 1444
Score = 40.0 bits (92), Expect = 0.004
Identities = 38/129 (29%), Positives = 46/129 (35%), Gaps = 9/129 (6%)
Query: 158 PPNLQEGGQRAIFQRPPVYLGNKPTP--PRQEGSFGGRPKSQPPLPQETAAPAPQPGPTA 215
PP +Q + + PP G P P +EG G K PP A PGP
Sbjct: 1214 PPGIQGSPGK---EGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEG 1270
Query: 216 PPARPPAYESREGPRGRAESRGSGPAQ--PAHLPLPGPAHSPAPPAPELREG-RAPGSTA 272
PP ++ G G RG A P LPG P P+ +G R P
Sbjct: 1271 ARG-PPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKN 1329
Query: 273 GRRPRPREP 281
G P EP
Sbjct: 1330 GSPGSPGEP 1338
Score = 38.9 bits (89), Expect = 0.010
Identities = 62/228 (27%), Positives = 81/228 (35%), Gaps = 30/228 (13%)
Query: 158 PPNLQEGGQRAIFQRP--PVYLGNKPTPPRQEGS----FGGR-PKSQPPLPQETAAPAPQ 210
PP + G+ + P P LG K + GS GG+ K P +P +
Sbjct: 980 PPGKGKDGEPGLRGSPGLPGPLGTKAACGKVRGSENCALGGQCVKGDRGAPGIPGSPGSR 1039
Query: 211 PGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGS 270
P A PP G +G SRG LPG P P P R+G APG+
Sbjct: 1040 GDPGIGVAGPPGPSGPPGDKGSPGSRG----------LPG---FPGPQGPAGRDG-APGN 1085
Query: 271 TAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGG 330
R P P +P + + L D + PP G F + G G
Sbjct: 1086 PGERGP-PGKPGLSSLLSPGDINLLAKD---VCNDCPPGPPGLPGLPGFKGDKGVPGKPG 1141
Query: 331 EGEGTHATHGPASPPGRRHDEEV----GAAVLRAGSGEGSRRGLQLTP 374
EGT G A PPG + G+ R GE ++G Q P
Sbjct: 1142 R-EGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEVGQKGDQGHP 1188
Score = 37.7 bits (86), Expect = 0.022
Identities = 50/194 (25%), Positives = 64/194 (32%), Gaps = 21/194 (10%)
Query: 190 FGGRP----KSQPPLPQETAAPAPQPG---PTAPPARPPAYESREGPRGRAESRGSGPAQ 242
F G+P + P P A P + G P PP P + +EG +G P
Sbjct: 609 FPGKPGDTGQQGRPGPSGVAGPQGEKGDVGPAGPPGVPGSVVQQEGLKGEQ----GAPGP 664
Query: 243 PAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRA 302
H PGP + P PE R+G P G R + + G + G
Sbjct: 665 RGHQGAPGPPGARGPIGPEGRDG--PPGLQGLRGKKGDMGPPGIPGLLGLQGPPGPPGVP 722
Query: 303 GSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPG-------RRHDEEVGA 355
G P + G F + G G G +GP PPG R D G
Sbjct: 723 GPPGPGGSPGLPGEIGFPGKPGPPGPTGP-PGKDGPNGPPGPPGTKGEPGERGEDGLPGK 781
Query: 356 AVLRAGSGEGSRRG 369
LR GE G
Sbjct: 782 PGLRGEIGEQGLAG 795
Score = 30.4 bits (67), Expect = 3.5
Identities = 42/166 (25%), Positives = 57/166 (34%), Gaps = 22/166 (13%)
Query: 210 QPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRAPG 269
+P P PP RPP S + + + + + + GP P P +G
Sbjct: 450 EPPPPPPPQRPPTPGSEQIGFLKTINCSCPAGEKGEMGVAGPMGLPGP------KGDIGA 503
Query: 270 STAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGG 329
P P+ + G G +G+ G PP G+ + RG
Sbjct: 504 IGPVGAPGPKGEKGDVGIGPFGQG-EKGEKGSLGLPGPPGRDGS---------KGMRGEP 553
Query: 330 GE-GE----GTHATHGPASPPGRRHDE-EVGAAVLRAGSGEGSRRG 369
GE GE G GP PPG VGA L+ GE RG
Sbjct: 554 GELGEPGLPGEVGMRGPQGPPGLPGPPGRVGAPGLQGERGEKGTRG 599
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.135 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,912,742
Number of Sequences: 37866
Number of extensions: 1950759
Number of successful extensions: 25640
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 2199
Number of HSP's that attempted gapping in prelim test: 11306
Number of HSP's gapped (non-prelim): 9357
length of query: 460
length of database: 18,247,518
effective HSP length: 106
effective length of query: 354
effective length of database: 14,233,722
effective search space: 5038737588
effective search space used: 5038737588
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.