Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239748993

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748993 PREDICTED: hypothetical protein XP_002346876 [Homo
sapiens]
         (552 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239748993 PREDICTED: hypothetical protein XP_002346876 [Homo ...  1181   0.0  
gi|239743015 PREDICTED: hypothetical protein XP_002342718 [Homo ...  1175   0.0  
gi|239754442 PREDICTED: hypothetical protein [Homo sapiens]           501   e-142
gi|239746069 PREDICTED: hypothetical protein XP_002343649 [Homo ...    41   0.002
gi|239508790 PREDICTED: hypothetical protein, partial [Homo sapi...    38   0.021
gi|4505349 necdin [Homo sapiens]                                       37   0.036
gi|239746071 PREDICTED: hypothetical protein XP_002343650 [Homo ...    36   0.080
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]            36   0.10 
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]          36   0.10 
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]          36   0.10 
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]          36   0.10 
gi|208431781 cyclic nucleotide gated channel beta 1 isoform b [H...    35   0.18 
gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H...    35   0.18 
gi|61175248 spermidine/spermine N1-acetyl transferase-like 1 [Ho...    35   0.18 
gi|239744358 PREDICTED: hypothetical protein XP_002343105 [Homo ...    35   0.23 
gi|188536004 zinc finger protein 469 [Homo sapiens]                    34   0.31 
gi|31543543 retinoic acid induced 17 [Homo sapiens]                    33   0.52 
gi|169217599 PREDICTED: hypothetical protein [Homo sapiens]            33   0.68 
gi|239754512 PREDICTED: hypothetical protein [Homo sapiens]            33   0.68 
gi|239749073 PREDICTED: hypothetical protein [Homo sapiens]            33   0.68 
gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo ...    33   0.68 
gi|239508751 PREDICTED: hypothetical protein [Homo sapiens]            33   0.68 
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]     33   0.68 
gi|39930571 leucine rich repeat containing 56 [Homo sapiens]           33   0.89 
gi|239757729 PREDICTED: hypothetical protein [Homo sapiens]            33   0.89 
gi|239752222 PREDICTED: hypothetical protein [Homo sapiens]            33   0.89 
gi|239746743 PREDICTED: hypothetical protein [Homo sapiens]            33   0.89 
gi|193804858 hypothetical protein LOC100128124 [Homo sapiens]          33   0.89 
gi|239755481 PREDICTED: similar to Putative uncharacterized prot...    32   1.2  
gi|59938776 cAMP responsive element binding protein 5 isoform de...    32   1.2  

>gi|239748993 PREDICTED: hypothetical protein XP_002346876 [Homo
           sapiens]
          Length = 552

 Score = 1181 bits (3054), Expect = 0.0
 Identities = 552/552 (100%), Positives = 552/552 (100%)

Query: 1   MPAGVLPLSQIHFLTGQTNLTVTRTNAAVCYAAHAVNGDEGYEGPRDFDQSGVKEIQPSA 60
           MPAGVLPLSQIHFLTGQTNLTVTRTNAAVCYAAHAVNGDEGYEGPRDFDQSGVKEIQPSA
Sbjct: 1   MPAGVLPLSQIHFLTGQTNLTVTRTNAAVCYAAHAVNGDEGYEGPRDFDQSGVKEIQPSA 60

Query: 61  WASVLILPGETHRNAPHHRYIRMKVRFLRRGVRNSSTCNLGRLVITEQPEQYKWWEALAP 120
           WASVLILPGETHRNAPHHRYIRMKVRFLRRGVRNSSTCNLGRLVITEQPEQYKWWEALAP
Sbjct: 61  WASVLILPGETHRNAPHHRYIRMKVRFLRRGVRNSSTCNLGRLVITEQPEQYKWWEALAP 120

Query: 121 RSPMRYACGKPQALCSPMHHACGKPRALCSPMHHACGKPRALLIPMHHACGKPRALLIPM 180
           RSPMRYACGKPQALCSPMHHACGKPRALCSPMHHACGKPRALLIPMHHACGKPRALLIPM
Sbjct: 121 RSPMRYACGKPQALCSPMHHACGKPRALCSPMHHACGKPRALLIPMHHACGKPRALLIPM 180

Query: 181 HHACGKPQAPLIPMHHACGKPRDQLIPMRHACGKPRDQLIPMRHACRKPRDQLIPMRHAC 240
           HHACGKPQAPLIPMHHACGKPRDQLIPMRHACGKPRDQLIPMRHACRKPRDQLIPMRHAC
Sbjct: 181 HHACGKPQAPLIPMHHACGKPRDQLIPMRHACGKPRDQLIPMRHACRKPRDQLIPMRHAC 240

Query: 241 GKPRDQLIPMRHECGKRRAPRSPMRYACGHHGLWKTACRRPPLQETGPSRGQKAQPEGWP 300
           GKPRDQLIPMRHECGKRRAPRSPMRYACGHHGLWKTACRRPPLQETGPSRGQKAQPEGWP
Sbjct: 241 GKPRDQLIPMRHECGKRRAPRSPMRYACGHHGLWKTACRRPPLQETGPSRGQKAQPEGWP 300

Query: 301 APLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLTVAFRVCS 360
           APLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLTVAFRVCS
Sbjct: 301 APLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLTVAFRVCS 360

Query: 361 FTICTPLCLLQDSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPLP 420
           FTICTPLCLLQDSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPLP
Sbjct: 361 FTICTPLCLLQDSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPLP 420

Query: 421 VSCSGIWRSSFQESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQGVYTAEGA 480
           VSCSGIWRSSFQESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQGVYTAEGA
Sbjct: 421 VSCSGIWRSSFQESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQGVYTAEGA 480

Query: 481 LVPVHFIAPALAKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRCETQEDDA 540
           LVPVHFIAPALAKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRCETQEDDA
Sbjct: 481 LVPVHFIAPALAKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRCETQEDDA 540

Query: 541 HTDGRKGSRQQA 552
           HTDGRKGSRQQA
Sbjct: 541 HTDGRKGSRQQA 552


>gi|239743015 PREDICTED: hypothetical protein XP_002342718 [Homo
           sapiens]
          Length = 552

 Score = 1175 bits (3040), Expect = 0.0
 Identities = 551/552 (99%), Positives = 551/552 (99%)

Query: 1   MPAGVLPLSQIHFLTGQTNLTVTRTNAAVCYAAHAVNGDEGYEGPRDFDQSGVKEIQPSA 60
           MPAGVLPLSQIHFLTGQTNLTVTRTNAAVCYAAHAVNGDEGYEGPRDFDQSGVKEIQPSA
Sbjct: 1   MPAGVLPLSQIHFLTGQTNLTVTRTNAAVCYAAHAVNGDEGYEGPRDFDQSGVKEIQPSA 60

Query: 61  WASVLILPGETHRNAPHHRYIRMKVRFLRRGVRNSSTCNLGRLVITEQPEQYKWWEALAP 120
           WASVLILPGETHRNAPHHRYIRMKVRFLRRGVRNSSTCNLGRLVITEQPEQYK WEALAP
Sbjct: 61  WASVLILPGETHRNAPHHRYIRMKVRFLRRGVRNSSTCNLGRLVITEQPEQYKRWEALAP 120

Query: 121 RSPMRYACGKPQALCSPMHHACGKPRALCSPMHHACGKPRALLIPMHHACGKPRALLIPM 180
           RSPMRYACGKPQALCSPMHHACGKPRALCSPMHHACGKPRALLIPMHHACGKPRALLIPM
Sbjct: 121 RSPMRYACGKPQALCSPMHHACGKPRALCSPMHHACGKPRALLIPMHHACGKPRALLIPM 180

Query: 181 HHACGKPQAPLIPMHHACGKPRDQLIPMRHACGKPRDQLIPMRHACRKPRDQLIPMRHAC 240
           HHACGKPQAPLIPMHHACGKPRDQLIPMRHACGKPRDQLIPMRHACRKPRDQLIPMRHAC
Sbjct: 181 HHACGKPQAPLIPMHHACGKPRDQLIPMRHACGKPRDQLIPMRHACRKPRDQLIPMRHAC 240

Query: 241 GKPRDQLIPMRHECGKRRAPRSPMRYACGHHGLWKTACRRPPLQETGPSRGQKAQPEGWP 300
           GKPRDQLIPMRHECGKRRAPRSPMRYACGHHGLWKTACRRPPLQETGPSRGQKAQPEGWP
Sbjct: 241 GKPRDQLIPMRHECGKRRAPRSPMRYACGHHGLWKTACRRPPLQETGPSRGQKAQPEGWP 300

Query: 301 APLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLTVAFRVCS 360
           APLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLTVAFRVCS
Sbjct: 301 APLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLTVAFRVCS 360

Query: 361 FTICTPLCLLQDSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPLP 420
           FTICTPLCLLQDSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPLP
Sbjct: 361 FTICTPLCLLQDSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPLP 420

Query: 421 VSCSGIWRSSFQESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQGVYTAEGA 480
           VSCSGIWRSSFQESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQGVYTAEGA
Sbjct: 421 VSCSGIWRSSFQESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQGVYTAEGA 480

Query: 481 LVPVHFIAPALAKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRCETQEDDA 540
           LVPVHFIAPALAKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRCETQEDDA
Sbjct: 481 LVPVHFIAPALAKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRCETQEDDA 540

Query: 541 HTDGRKGSRQQA 552
           HTDGRKGSRQQA
Sbjct: 541 HTDGRKGSRQQA 552


>gi|239754442 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 319

 Score =  501 bits (1291), Expect = e-142
 Identities = 240/241 (99%), Positives = 240/241 (99%)

Query: 312 HHRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLTVAFRVCSFTICTPLCLLQ 371
           H RAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLTVAFRVCSFTICTPLCLLQ
Sbjct: 79  HSRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLTVAFRVCSFTICTPLCLLQ 138

Query: 372 DSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPLPVSCSGIWRSSF 431
           DSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPLPVSCSGIWRSSF
Sbjct: 139 DSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPLPVSCSGIWRSSF 198

Query: 432 QESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQGVYTAEGALVPVHFIAPAL 491
           QESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQGVYTAEGALVPVHFIAPAL
Sbjct: 199 QESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQGVYTAEGALVPVHFIAPAL 258

Query: 492 AKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRCETQEDDAHTDGRKGSRQQ 551
           AKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRCETQEDDAHTDGRKGSRQQ
Sbjct: 259 AKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRCETQEDDAHTDGRKGSRQQ 318

Query: 552 A 552
           A
Sbjct: 319 A 319


>gi|239746069 PREDICTED: hypothetical protein XP_002343649 [Homo
           sapiens]
          Length = 140

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 25/99 (25%), Positives = 43/99 (43%)

Query: 154 HACGKPRALLIPMHHACGKPRALLIPMHHACGKPQAPLIPMHHACGKPRDQLIPMRHACG 213
           H+   P   +I   H+   P   +I   H+   P   +I   H+   P  ++I  RH+  
Sbjct: 34  HSAVAPGGKMIVESHSAVAPGGRMIVERHSAVAPGGKMIVESHSAVAPGGRMIVERHSVV 93

Query: 214 KPRDQLIPMRHACRKPRDQLIPMRHACGKPRDQLIPMRH 252
               ++I  RH+   P  ++I  RH+   P  ++I  RH
Sbjct: 94  ALGGRMIVKRHSAVAPGGKMIVERHSAVAPGGRMIVERH 132



 Score = 38.5 bits (88), Expect = 0.016
 Identities = 24/99 (24%), Positives = 42/99 (42%)

Query: 154 HACGKPRALLIPMHHACGKPRALLIPMHHACGKPQAPLIPMHHACGKPRDQLIPMRHACG 213
           H+   P   +I   H+   P   +I   H+   P   +I   H+   P  ++I  RH+  
Sbjct: 6   HSVVAPGGKMIVERHSAVAPGGKMIVESHSAVAPGGKMIVESHSAVAPGGRMIVERHSAV 65

Query: 214 KPRDQLIPMRHACRKPRDQLIPMRHACGKPRDQLIPMRH 252
            P  ++I   H+   P  ++I  RH+      ++I  RH
Sbjct: 66  APGGKMIVESHSAVAPGGRMIVERHSVVALGGRMIVKRH 104



 Score = 38.5 bits (88), Expect = 0.016
 Identities = 24/99 (24%), Positives = 42/99 (42%)

Query: 154 HACGKPRALLIPMHHACGKPRALLIPMHHACGKPQAPLIPMHHACGKPRDQLIPMRHACG 213
           H+   P   +I   H+   P   +I   H+   P   +I   H+   P  ++I   H+  
Sbjct: 20  HSAVAPGGKMIVESHSAVAPGGKMIVESHSAVAPGGRMIVERHSAVAPGGKMIVESHSAV 79

Query: 214 KPRDQLIPMRHACRKPRDQLIPMRHACGKPRDQLIPMRH 252
            P  ++I  RH+      ++I  RH+   P  ++I  RH
Sbjct: 80  APGGRMIVERHSVVALGGRMIVKRHSAVAPGGKMIVERH 118



 Score = 35.8 bits (81), Expect = 0.10
 Identities = 22/90 (24%), Positives = 38/90 (42%)

Query: 154 HACGKPRALLIPMHHACGKPRALLIPMHHACGKPQAPLIPMHHACGKPRDQLIPMRHACG 213
           H+   P   +I   H+   P   +I   H+   P   +I   H+      ++I  RH+  
Sbjct: 48  HSAVAPGGRMIVERHSAVAPGGKMIVESHSAVAPGGRMIVERHSVVALGGRMIVKRHSAV 107

Query: 214 KPRDQLIPMRHACRKPRDQLIPMRHACGKP 243
            P  ++I  RH+   P  ++I  RH+   P
Sbjct: 108 APGGKMIVERHSAVAPGGRMIVERHSVVAP 137



 Score = 29.6 bits (65), Expect = 7.5
 Identities = 20/90 (22%), Positives = 34/90 (37%)

Query: 140 HACGKPRALCSPMHHACGKPRALLIPMHHACGKPRALLIPMHHACGKPQAPLIPMHHACG 199
           H+   P        H+   P   +I   H+   P   +I   H+       +I   H+  
Sbjct: 48  HSAVAPGGRMIVERHSAVAPGGKMIVESHSAVAPGGRMIVERHSVVALGGRMIVKRHSAV 107

Query: 200 KPRDQLIPMRHACGKPRDQLIPMRHACRKP 229
            P  ++I  RH+   P  ++I  RH+   P
Sbjct: 108 APGGKMIVERHSAVAPGGRMIVERHSVVAP 137


>gi|239508790 PREDICTED: hypothetical protein, partial [Homo
           sapiens]
          Length = 490

 Score = 38.1 bits (87), Expect = 0.021
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 1/96 (1%)

Query: 153 HHACGKPRALLIPMHHACGKPRALLIPMHHACGKPQAPLIPMHHACGKPRDQLIPMRHAC 212
           H++   P   L+P HH        L+  H     P  PL+ +HH    P   L+   H  
Sbjct: 13  HYSVVSPHCPLVPPHHPLVSLHHPLVSPHFPLVSPHHPLVSLHHPV-SPHFPLVSPHHPL 71

Query: 213 GKPRDQLIPMRHACRKPRDQLIPMRHACGKPRDQLI 248
             P   L+  +++   P   L+   ++   P   L+
Sbjct: 72  MSPHYSLVSPQYSPVSPHCPLVSPHYSLVSPHRPLV 107



 Score = 37.0 bits (84), Expect = 0.047
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 1/96 (1%)

Query: 139 HHACGKPRALCSPMHHACGKPRALLIPMHHACGKPRALLIPMHHACGKPQAPLIPMHHAC 198
           H++   P     P HH        L+  H     P   L+ +HH    P  PL+  HH  
Sbjct: 13  HYSVVSPHCPLVPPHHPLVSLHHPLVSPHFPLVSPHHPLVSLHHPV-SPHFPLVSPHHPL 71

Query: 199 GKPRDQLIPMRHACGKPRDQLIPMRHACRKPRDQLI 234
             P   L+  +++   P   L+   ++   P   L+
Sbjct: 72  MSPHYSLVSPQYSPVSPHCPLVSPHYSLVSPHRPLV 107



 Score = 35.8 bits (81), Expect = 0.10
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 1/90 (1%)

Query: 159 PRALLIPMHHACGKPRALLIPMHHACGKPQAPLIPMHHACGKPRDQLIPMRHACGKPRDQ 218
           P   ++  H++   P   L+P HH       PL+  H     P   L+ + H    P   
Sbjct: 5   PYCPVVSTHYSVVSPHCPLVPPHHPLVSLHHPLVSPHFPLVSPHHPLVSLHHPV-SPHFP 63

Query: 219 LIPMRHACRKPRDQLIPMRHACGKPRDQLI 248
           L+   H    P   L+  +++   P   L+
Sbjct: 64  LVSPHHPLMSPHYSLVSPQYSPVSPHCPLV 93


>gi|4505349 necdin [Homo sapiens]
          Length = 321

 Score = 37.4 bits (85), Expect = 0.036
 Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 13/68 (19%)

Query: 281 PPLQETGPSRGQKAQP-------EGWPAPLPRRQEEGPHHRAHASPSLWGPGPIKPGPRT 333
           PPL   GP+   +A P       EG P  L +  EEG   RAH +PS   PGP  P P  
Sbjct: 44  PPL---GPTAAPQAAPPPQAPNDEGDPKALQQAAEEG---RAHQAPSAAQPGPAPPAPAQ 97

Query: 334 HQTKAPEI 341
              KA E+
Sbjct: 98  LVQKAHEL 105


>gi|239746071 PREDICTED: hypothetical protein XP_002343650 [Homo
           sapiens]
          Length = 168

 Score = 36.2 bits (82), Expect = 0.080
 Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 9/164 (5%)

Query: 92  VRNSSTCNLGRLVITEQPEQYKWWEALAPRSPM---RYACGKPQALCSPMHHACGKPRAL 148
           V   S   LGR +I E+         +AP   M   R++   P    +   H+   P   
Sbjct: 3   VERHSVVALGRRMIVERHS------VVAPGGKMIVERHSAVAPAGKMTVERHSAVAPAGR 56

Query: 149 CSPMHHACGKPRALLIPMHHACGKPRALLIPMHHACGKPQAPLIPMHHACGKPRDQLIPM 208
                H+   P   +I   H+   P   +I   H+   P   +I   H+      ++I  
Sbjct: 57  MIVERHSAVAPGGRMIVESHSAVAPGGRMIVESHSAVAPGGRMIVERHSVVALGGRVILE 116

Query: 209 RHACGKPRDQLIPMRHACRKPRDQLIPMRHACGKPRDQLIPMRH 252
           RH+      ++I  RH+      ++I  RH+   P  ++I  RH
Sbjct: 117 RHSVVALGGRMIVERHSVVALGGRVILERHSAVAPGGRMIVERH 160



 Score = 33.1 bits (74), Expect = 0.68
 Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 162 LLIPMHHACGKPRALLIPMHHACGKPQAPLIPMHHACGKPRDQLIPMRHACGKPRDQLIP 221
           + +  H      R +++  H     P   +I   H+   P  ++   RH+   P  ++I 
Sbjct: 1   MTVERHSVVALGRRMIVERHSVVA-PGGKMIVERHSAVAPAGKMTVERHSAVAPAGRMIV 59

Query: 222 MRHACRKPRDQLIPMRHACGKPRDQLIPMRH 252
            RH+   P  ++I   H+   P  ++I   H
Sbjct: 60  ERHSAVAPGGRMIVESHSAVAPGGRMIVESH 90


>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 426

 Score = 35.8 bits (81), Expect = 0.10
 Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 10/55 (18%)

Query: 295 QPEGWPAPLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSG 349
           QPEG  AP P          A  SP+   P PI P P+   T+A E   AAW +G
Sbjct: 24  QPEGTDAPGP----------AVCSPTARAPPPILPAPQRPPTRAREWEGAAWAAG 68


>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
          Length = 1012

 Score = 35.8 bits (81), Expect = 0.10
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 281 PPLQETGPSRGQKAQPEGWPAPLPRRQEEGPHHRAHASPSLWGPGPIKP---GPRTHQTK 337
           PPLQ    S GQ + P     PL  +   GP H   A P L  PGP +P    P+  Q +
Sbjct: 270 PPLQPLTGSAGQPSAPSHAQPPLHGQGPPGP-HSLQAGPLLQHPGPPQPFGLPPQASQGQ 328

Query: 338 AP 339
           AP
Sbjct: 329 AP 330


>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
          Length = 1566

 Score = 35.8 bits (81), Expect = 0.10
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 281 PPLQETGPSRGQKAQPEGWPAPLPRRQEEGPHHRAHASPSLWGPGPIKP---GPRTHQTK 337
           PPLQ    S GQ + P     PL  +   GP H   A P L  PGP +P    P+  Q +
Sbjct: 824 PPLQPLTGSAGQPSAPSHAQPPLHGQGPPGP-HSLQAGPLLQHPGPPQPFGLPPQASQGQ 882

Query: 338 AP 339
           AP
Sbjct: 883 AP 884


>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
          Length = 1566

 Score = 35.8 bits (81), Expect = 0.10
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 281 PPLQETGPSRGQKAQPEGWPAPLPRRQEEGPHHRAHASPSLWGPGPIKP---GPRTHQTK 337
           PPLQ    S GQ + P     PL  +   GP H   A P L  PGP +P    P+  Q +
Sbjct: 824 PPLQPLTGSAGQPSAPSHAQPPLHGQGPPGP-HSLQAGPLLQHPGPPQPFGLPPQASQGQ 882

Query: 338 AP 339
           AP
Sbjct: 883 AP 884


>gi|208431781 cyclic nucleotide gated channel beta 1 isoform b [Homo
           sapiens]
          Length = 299

 Score = 35.0 bits (79), Expect = 0.18
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 300 PAPLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTKAPE 340
           PAP  R QE GP  +A  +PSL  P P++P     +  APE
Sbjct: 194 PAPPGRPQEMGPKLQARETPSLPTPIPLQPKEEPKEAPAPE 234


>gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [Homo
           sapiens]
          Length = 1251

 Score = 35.0 bits (79), Expect = 0.18
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 300 PAPLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTKAPE 340
           PAP  R QE GP  +A  +PSL  P P++P     +  APE
Sbjct: 194 PAPPGRPQEMGPKLQARETPSLPTPIPLQPKEEPKEAPAPE 234


>gi|61175248 spermidine/spermine N1-acetyl transferase-like 1 [Homo
           sapiens]
          Length = 445

 Score = 35.0 bits (79), Expect = 0.18
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 260 PRSPMRYACGHHGLWKTACRRPPLQETGPSRGQKAQPEGWPAPLPRRQEEGPHHRAHASP 319
           PR P +      G+W+    +P + +  PS+    QP         + + G  H     P
Sbjct: 239 PRQPNK---SPPGMWQRGMWQPGMSQQVPSQLGMRQPG---TSQSSKNQTGMSHPGRGQP 292

Query: 320 SLWGPGPIKPG 330
            +W PGP +PG
Sbjct: 293 GIWEPGPSQPG 303


>gi|239744358 PREDICTED: hypothetical protein XP_002343105 [Homo
           sapiens]
          Length = 767

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 32/101 (31%), Positives = 39/101 (38%), Gaps = 15/101 (14%)

Query: 258 RAPRSPMRYACGH-HGLWKTACRRPPLQETGPSRGQKAQPEGWPAPLPRRQEEGPHH--- 313
           RAP    R   GH H   K      P QE     G+K Q E  P     R+ EG  +   
Sbjct: 101 RAPAVGCRQRSGHLHVRLKQRLLERPCQEP---LGKKYQLELPPLYERARKPEGSKNLPA 157

Query: 314 --------RAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAW 346
                   RA A+  +W  GP +PGP   +  A   HQ  W
Sbjct: 158 DGQGLRAVRADAALPVWPGGPGRPGPHAPEAGAEGQHQGQW 198


>gi|188536004 zinc finger protein 469 [Homo sapiens]
          Length = 3925

 Score = 34.3 bits (77), Expect = 0.31
 Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 12/98 (12%)

Query: 122  SPMRYACGKPQALCSPMHHACGKPRALCSPMHHACGK--PRALLIPMHHACGKP-RALLI 178
            SP  +A G+P    +P+H AC  P   C    H CGK  P+   +  H A   P R  L 
Sbjct: 3284 SPDPWAGGEPLLQATPVHEACKDPSRDC----HHCGKRFPKPFKLQRHLAVHSPQRVYLC 3339

Query: 179  P----MHHACGKPQAPLIPMHHACGKPRDQLIPMRHAC 212
            P    ++   G+  A L   H    +P  Q  P+ +AC
Sbjct: 3340 PRCPRVYPEHGELLAHLGGAHGLLERPELQHTPL-YAC 3376


>gi|31543543 retinoic acid induced 17 [Homo sapiens]
          Length = 1067

 Score = 33.5 bits (75), Expect = 0.52
 Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 282  PLQETGPSRGQKAQP-----EGWPAPLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQT 336
            P+QET P  G   QP     +G   P P  Q   P H + A P    P P +P PR    
Sbjct: 941  PMQETMPHAGSSDQPHPSIQQGLHVPHPSSQSGPPLHHSGAPP----PPPSQP-PRQPPQ 995

Query: 337  KAPEIH 342
             AP  H
Sbjct: 996  AAPSSH 1001


>gi|169217599 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 322

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 35/121 (28%), Positives = 45/121 (37%), Gaps = 20/121 (16%)

Query: 260 PRSPMRYACGHHGLWKTACRRPPL----QETGPSRGQKAQPEGWPAPLPRRQEEGPHHRA 315
           P  P R   G +G W+ A    PL    +  G + G +   E  P P P  Q+E      
Sbjct: 47  PLGPWRLLRGPNGTWRKAFITSPLGTVHRVPGAASGTEVNAEAIPPP-PDPQDERAFREE 105

Query: 316 HA----------SPSLWGPGPIKPGPRTHQTKA-PEIHQAAWLSGFSLTVAFRVCSFTIC 364
            A          SP   GP    PG R   ++A PE  Q  W     LTV+ +      C
Sbjct: 106 SAVSQEGVTAVHSPLTTGP----PGRRVACSEAGPETPQHPWSLYSGLTVSSQELDLCFC 161

Query: 365 T 365
           T
Sbjct: 162 T 162


>gi|239754512 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 556

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 26/79 (32%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 251 RHECGKRRAPRSPMRYACGHHGLWKTACRRPPLQETGPSRGQKAQPEGWPAPLPRRQEEG 310
           RHE  ++  PR P +        W    R  P   T   RG    P   P PLP      
Sbjct: 413 RHEAPEQGKPRLPPQ-------AWHDQGRDAPPGPTPARRGLPRPPPPPPPPLPPPPRRE 465

Query: 311 PHHRAHASPSLWGPGPIKP 329
           P HRA      W PGP +P
Sbjct: 466 PCHRA------W-PGPAQP 477


>gi|239749073 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 884

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 26/79 (32%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 251 RHECGKRRAPRSPMRYACGHHGLWKTACRRPPLQETGPSRGQKAQPEGWPAPLPRRQEEG 310
           RHE  ++  PR P +        W    R  P   T   RG    P   P PLP      
Sbjct: 741 RHEAPEQGKPRLPPQ-------AWHDQGRDAPPGPTPARRGLPRPPPPPPPPLPPPPRRE 793

Query: 311 PHHRAHASPSLWGPGPIKP 329
           P HRA      W PGP +P
Sbjct: 794 PCHRA------W-PGPAQP 805


>gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo
           sapiens]
          Length = 884

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 26/79 (32%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 251 RHECGKRRAPRSPMRYACGHHGLWKTACRRPPLQETGPSRGQKAQPEGWPAPLPRRQEEG 310
           RHE  ++  PR P +        W    R  P   T   RG    P   P PLP      
Sbjct: 741 RHEAPEQGKPRLPPQ-------AWHDQGRDAPPGPTPARRGLPRPPPPPPPPLPPPPRRE 793

Query: 311 PHHRAHASPSLWGPGPIKP 329
           P HRA      W PGP +P
Sbjct: 794 PCHRA------W-PGPAQP 805


>gi|239508751 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 884

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 26/79 (32%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 251 RHECGKRRAPRSPMRYACGHHGLWKTACRRPPLQETGPSRGQKAQPEGWPAPLPRRQEEG 310
           RHE  ++  PR P +        W    R  P   T   RG    P   P PLP      
Sbjct: 741 RHEAPEQGKPRLPPQ-------AWHDQGRDAPPGPTPARRGLPRPPPPPPPPLPPPPRRE 793

Query: 311 PHHRAHASPSLWGPGPIKP 329
           P HRA      W PGP +P
Sbjct: 794 PCHRA------W-PGPAQP 805


>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
          Length = 1020

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 47/242 (19%), Positives = 79/242 (32%), Gaps = 30/242 (12%)

Query: 116 EALAP---RSPMRYACGKPQALCSPMHHACGKPRALCSPMHHACGKPRALLIPMHHACGK 172
           EA +P   +SP++     P+   SP+      P    SP+      P     P+      
Sbjct: 659 EAKSPEKAKSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKS 718

Query: 173 PRALLIPMHHACGKPQAPLIPMHHACGKPRDQLIPMRHAC--GKPRDQLIPMRHACRKPR 230
           P     P+      P+    P+      P     P +      K  +   P +   R P 
Sbjct: 719 PEKAKSPVKEEAKTPEKAKSPVKEEAKSPEKAKSPEKAKTLDVKSPEAKTPAKEEARSPA 778

Query: 231 DQLIPMRHACGKPRDQLIPMRHECGKRRAPRSPMR---YACGHHGLWKTACRRPPLQETG 287
           D+          P     P++ E       +SP++    A       K   + P  +E  
Sbjct: 779 DKF---------PEKAKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKKEEVKSPVKEEEK 829

Query: 288 PSR------GQKAQPEGWPAPLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTKAPEI 341
           P         +KA+ E  PA  P+ +E+    +  A      P    P P+  + K P +
Sbjct: 830 PQEVKVKEPPKKAEEEKAPA-TPKTEEKKDSKKEEA------PKKEAPKPKVEEKKEPAV 882

Query: 342 HQ 343
            +
Sbjct: 883 EK 884


>gi|39930571 leucine rich repeat containing 56 [Homo sapiens]
          Length = 542

 Score = 32.7 bits (73), Expect = 0.89
 Identities = 30/116 (25%), Positives = 40/116 (34%), Gaps = 11/116 (9%)

Query: 229 PRDQLIPMRHA-----CGKPRDQLIPMRHECGKRRAPRSPMRYACGHHGLWKTACRRPPL 283
           P D    + H      CG P   L   RH+C  R  P    ++  G      +     P 
Sbjct: 315 PEDNTSSLTHGAGQVLCGNPTKGLRERRHQCQAREPPEQLPQHRPGDPAASTSTPEPDPA 374

Query: 284 QETG--PSRGQKAQPEGWPAPLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTK 337
             +      G +A  E    PLP R  E     A A    WGP  + P  + HQ +
Sbjct: 375 DSSDFLALAGLRAWREHGVRPLPYRHPESQQEGAVAP---WGPRRV-PEEQVHQAE 426


>gi|239757729 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 329

 Score = 32.7 bits (73), Expect = 0.89
 Identities = 61/246 (24%), Positives = 82/246 (33%), Gaps = 59/246 (23%)

Query: 120 PRSPMRYACGKPQALCSPMHHACGKPRALCSPMHHACGKPRALLIPMHHACGKPRALLIP 179
           P SP R   G+P     P    C +P   C P      +PR       H   +  ALL  
Sbjct: 74  PCSPRRGRRGRPTQEVCPAPGPCAQPAGTCPPPPTGEKQPRPHGFRCSHGSKRAPALL-- 131

Query: 180 MHHACGKPQAPLIPMHHACGKPR-DQLIPMRHACGKPRDQLIP---MRHACRKPRDQLIP 235
                G P     P  H   +PR  +L P+     +P    +P    + A    R  L P
Sbjct: 132 -----GAPARR--PPAHIPAQPRWPRLQPVAKRRARPVPPGLPGAPKQAALTPGRRPLTP 184

Query: 236 MRHACGKPRDQLIPMRHECGKRRAPRSPMRYACGHHGLWKTACRRPPLQETGPSR----- 290
              A    RDQ +                           T C+R  ++ETGP+R     
Sbjct: 185 AAFAPKASRDQQVTDS-----------------------TTICQRGLIEETGPARQISDL 221

Query: 291 -----GQKA-QPEGWPAPL--PRRQEEGPH---HRAHASPSLWGPGPI-------KPGPR 332
                G  A +  G P+ L   R Q   PH     + +SPS W   P        +PG  
Sbjct: 222 CEVSQGVGAFRAGGCPSSLASSREQTHSPHLYPSPSSSSPSSWEAPPANSVTPRGRPGIP 281

Query: 333 THQTKA 338
            H+  A
Sbjct: 282 AHKLGA 287



 Score = 32.0 bits (71), Expect = 1.5
 Identities = 42/159 (26%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 201 PRDQLIPMRHACGKPRDQLIPMRHACRKPRDQ-LIPMRHACGKPRDQLIPMRHECGKRRA 259
           P ++++ +     KP+DQ  P        RD  L P R     PR    P+  E G + +
Sbjct: 2   PTERILNLYGKNYKPQDQSPPSPQ-----RDSGLTPERDRPDWPRSFKPPLSPEKGTKAS 56

Query: 260 PRSPMRYACGHHGLWKTAC------RRPPLQETGPSRGQKAQPEG-WPAPLPRRQEEGPH 312
                  +    GL    C      R  P QE  P+ G  AQP G  P P    ++  PH
Sbjct: 57  GPQTSAPSPRDPGLHTPPCSPRRGRRGRPTQEVCPAPGPCAQPAGTCPPPPTGEKQPRPH 116

Query: 313 -----HRAHASPSLWG-PGPIKPGPRTHQTKAPEIHQAA 345
                H +  +P+L G P    P     Q + P +   A
Sbjct: 117 GFRCSHGSKRAPALLGAPARRPPAHIPAQPRWPRLQPVA 155


>gi|239752222 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 329

 Score = 32.7 bits (73), Expect = 0.89
 Identities = 61/246 (24%), Positives = 82/246 (33%), Gaps = 59/246 (23%)

Query: 120 PRSPMRYACGKPQALCSPMHHACGKPRALCSPMHHACGKPRALLIPMHHACGKPRALLIP 179
           P SP R   G+P     P    C +P   C P      +PR       H   +  ALL  
Sbjct: 74  PCSPRRGRRGRPTQEVCPAPGPCAQPAGTCPPPPTGEKQPRPHGFRCSHGSKRAPALL-- 131

Query: 180 MHHACGKPQAPLIPMHHACGKPR-DQLIPMRHACGKPRDQLIP---MRHACRKPRDQLIP 235
                G P     P  H   +PR  +L P+     +P    +P    + A    R  L P
Sbjct: 132 -----GAPARR--PPAHIPAQPRWPRLQPVAKRRARPVPPGLPGAPKQAALTPGRRPLTP 184

Query: 236 MRHACGKPRDQLIPMRHECGKRRAPRSPMRYACGHHGLWKTACRRPPLQETGPSR----- 290
              A    RDQ +                           T C+R  ++ETGP+R     
Sbjct: 185 AAFAPKASRDQQVTDS-----------------------TTICQRGLIEETGPARQISDL 221

Query: 291 -----GQKA-QPEGWPAPL--PRRQEEGPH---HRAHASPSLWGPGPI-------KPGPR 332
                G  A +  G P+ L   R Q   PH     + +SPS W   P        +PG  
Sbjct: 222 CEVSQGVGAFRAGGCPSSLASSREQTHSPHLYPSPSSSSPSSWEAPPANSVTPRGRPGIP 281

Query: 333 THQTKA 338
            H+  A
Sbjct: 282 AHKLGA 287



 Score = 32.0 bits (71), Expect = 1.5
 Identities = 42/159 (26%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 201 PRDQLIPMRHACGKPRDQLIPMRHACRKPRDQ-LIPMRHACGKPRDQLIPMRHECGKRRA 259
           P ++++ +     KP+DQ  P        RD  L P R     PR    P+  E G + +
Sbjct: 2   PTERILNLYGKNYKPQDQSPPSPQ-----RDSGLTPERDRPDWPRSFKPPLSPEKGTKAS 56

Query: 260 PRSPMRYACGHHGLWKTAC------RRPPLQETGPSRGQKAQPEG-WPAPLPRRQEEGPH 312
                  +    GL    C      R  P QE  P+ G  AQP G  P P    ++  PH
Sbjct: 57  GPQTSAPSPRDPGLHTPPCSPRRGRRGRPTQEVCPAPGPCAQPAGTCPPPPTGEKQPRPH 116

Query: 313 -----HRAHASPSLWG-PGPIKPGPRTHQTKAPEIHQAA 345
                H +  +P+L G P    P     Q + P +   A
Sbjct: 117 GFRCSHGSKRAPALLGAPARRPPAHIPAQPRWPRLQPVA 155


>gi|239746743 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 329

 Score = 32.7 bits (73), Expect = 0.89
 Identities = 61/246 (24%), Positives = 82/246 (33%), Gaps = 59/246 (23%)

Query: 120 PRSPMRYACGKPQALCSPMHHACGKPRALCSPMHHACGKPRALLIPMHHACGKPRALLIP 179
           P SP R   G+P     P    C +P   C P      +PR       H   +  ALL  
Sbjct: 74  PCSPRRGRRGRPTQEVCPAPGPCAQPAGTCPPPPTGEKQPRPHGFRCSHGSKRAPALL-- 131

Query: 180 MHHACGKPQAPLIPMHHACGKPR-DQLIPMRHACGKPRDQLIP---MRHACRKPRDQLIP 235
                G P     P  H   +PR  +L P+     +P    +P    + A    R  L P
Sbjct: 132 -----GAPARR--PPAHIPAQPRWPRLQPVAKRRARPVPPGLPGAPKQAALTPGRRPLTP 184

Query: 236 MRHACGKPRDQLIPMRHECGKRRAPRSPMRYACGHHGLWKTACRRPPLQETGPSR----- 290
              A    RDQ +                           T C+R  ++ETGP+R     
Sbjct: 185 AAFAPKASRDQQVTDS-----------------------TTICQRGLIEETGPARQISDL 221

Query: 291 -----GQKA-QPEGWPAPL--PRRQEEGPH---HRAHASPSLWGPGPI-------KPGPR 332
                G  A +  G P+ L   R Q   PH     + +SPS W   P        +PG  
Sbjct: 222 CEVSQGVGAFRAGGCPSSLASSREQTHSPHLYPSPSSSSPSSWEAPPANSVTPRGRPGIP 281

Query: 333 THQTKA 338
            H+  A
Sbjct: 282 AHKLGA 287



 Score = 32.0 bits (71), Expect = 1.5
 Identities = 42/159 (26%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 201 PRDQLIPMRHACGKPRDQLIPMRHACRKPRDQ-LIPMRHACGKPRDQLIPMRHECGKRRA 259
           P ++++ +     KP+DQ  P        RD  L P R     PR    P+  E G + +
Sbjct: 2   PTERILNLYGKNYKPQDQSPPSPQ-----RDSGLTPERDRPDWPRSFKPPLSPEKGTKAS 56

Query: 260 PRSPMRYACGHHGLWKTAC------RRPPLQETGPSRGQKAQPEG-WPAPLPRRQEEGPH 312
                  +    GL    C      R  P QE  P+ G  AQP G  P P    ++  PH
Sbjct: 57  GPQTSAPSPRDPGLHTPPCSPRRGRRGRPTQEVCPAPGPCAQPAGTCPPPPTGEKQPRPH 116

Query: 313 -----HRAHASPSLWG-PGPIKPGPRTHQTKAPEIHQAA 345
                H +  +P+L G P    P     Q + P +   A
Sbjct: 117 GFRCSHGSKRAPALLGAPARRPPAHIPAQPRWPRLQPVA 155


>gi|193804858 hypothetical protein LOC100128124 [Homo sapiens]
          Length = 171

 Score = 32.7 bits (73), Expect = 0.89
 Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 4/72 (5%)

Query: 131 PQALCSPMHHACGKPRALCSPMHHACG--KPRALLIPMHHACGKPRALLIPMHHACGKPQ 188
           P    SP  H  G      S   H  G   P A   P H     P  LL+P H     P 
Sbjct: 102 PTVFSSP--HTAGGMTPTASSSQHTAGVMTPTASSFPTHCRGNDPHCLLLPQHCRGNDPH 159

Query: 189 APLIPMHHACGK 200
             L+P H   G+
Sbjct: 160 CLLLPTHTLQGE 171



 Score = 31.6 bits (70), Expect = 2.0
 Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 126 YACGKPQALCSPMHHACG--KPRALCSPMHHACGKPRALLIPMHHACGKPRALLIPMHHA 183
           +  G      S   H  G   P A   P H     P  LL+P H     P  LL+P H  
Sbjct: 109 HTAGGMTPTASSSQHTAGVMTPTASSFPTHCRGNDPHCLLLPQHCRGNDPHCLLLPTHTL 168

Query: 184 CGK 186
            G+
Sbjct: 169 QGE 171


>gi|239755481 PREDICTED: similar to Putative uncharacterized protein
           ENSP00000334305 [Homo sapiens]
          Length = 771

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 35/106 (33%), Positives = 41/106 (38%), Gaps = 21/106 (19%)

Query: 258 RAPRSPMRYACGH-HGLWKTACRRPPLQETGPSRGQKAQPEGWPAPLPRRQEEGPHH--- 313
           RAP    R   GH H   K      P QE     G+K Q E  P     R+ EG  +   
Sbjct: 101 RAPAVGCRQRSGHLHVRLKQRLLERPCQEP---LGKKYQLELPPLYERARKPEGSKNLPA 157

Query: 314 --------RAHASPSLWGPGPIKPGPRTHQTKAPEI-----HQAAW 346
                   RA A+  +W  GP +PG R H   APE      HQ  W
Sbjct: 158 DGQGLRAVRADAALPVWPGGPGRPGSRAH-LPAPEAGAEGQHQGQW 202


>gi|59938776 cAMP responsive element binding protein 5 isoform delta
           [Homo sapiens]
          Length = 369

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 34/138 (24%), Positives = 49/138 (35%), Gaps = 20/138 (14%)

Query: 208 MRHACGKPRDQLIPMRHACRKPRDQLIPMRHACGKPRDQLIPMRH--ECGKRRAPRSPMR 265
           + + C  P+ Q  PM H+  K R +     H        +  M H  E    R  ++P  
Sbjct: 77  LSNPCASPQVQ--PM-HSEAKMRLKAALTHHPAAMSNGNMNTMGHMMEMMGSRQDQTP-- 131

Query: 266 YACGHHGLWKTACRRPPLQETGPSRGQKAQPEGWPAPLPRRQEEGPHHRAHASPSLWGPG 325
               HH +     +   L    P   Q   P   P P P  Q+  PHH +H+        
Sbjct: 132 ----HHHMHSHPHQHQTLPPHHPYPHQHQHPAHHPHPQPHHQQNHPHHHSHSH------- 180

Query: 326 PIKPGPRTHQTKA-PEIH 342
            +   P  HQT   P +H
Sbjct: 181 -LHAHPAHHQTSPHPPLH 197


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.136    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,895,101
Number of Sequences: 37866
Number of extensions: 1595888
Number of successful extensions: 4540
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 4342
Number of HSP's gapped (non-prelim): 219
length of query: 552
length of database: 18,247,518
effective HSP length: 107
effective length of query: 445
effective length of database: 14,195,856
effective search space: 6317155920
effective search space used: 6317155920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press