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Search of human proteins with 239748993
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748993 PREDICTED: hypothetical protein XP_002346876 [Homo
sapiens]
(552 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748993 PREDICTED: hypothetical protein XP_002346876 [Homo ... 1181 0.0
gi|239743015 PREDICTED: hypothetical protein XP_002342718 [Homo ... 1175 0.0
gi|239754442 PREDICTED: hypothetical protein [Homo sapiens] 501 e-142
gi|239746069 PREDICTED: hypothetical protein XP_002343649 [Homo ... 41 0.002
gi|239508790 PREDICTED: hypothetical protein, partial [Homo sapi... 38 0.021
gi|4505349 necdin [Homo sapiens] 37 0.036
gi|239746071 PREDICTED: hypothetical protein XP_002343650 [Homo ... 36 0.080
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 36 0.10
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 36 0.10
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 36 0.10
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 36 0.10
gi|208431781 cyclic nucleotide gated channel beta 1 isoform b [H... 35 0.18
gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H... 35 0.18
gi|61175248 spermidine/spermine N1-acetyl transferase-like 1 [Ho... 35 0.18
gi|239744358 PREDICTED: hypothetical protein XP_002343105 [Homo ... 35 0.23
gi|188536004 zinc finger protein 469 [Homo sapiens] 34 0.31
gi|31543543 retinoic acid induced 17 [Homo sapiens] 33 0.52
gi|169217599 PREDICTED: hypothetical protein [Homo sapiens] 33 0.68
gi|239754512 PREDICTED: hypothetical protein [Homo sapiens] 33 0.68
gi|239749073 PREDICTED: hypothetical protein [Homo sapiens] 33 0.68
gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo ... 33 0.68
gi|239508751 PREDICTED: hypothetical protein [Homo sapiens] 33 0.68
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 33 0.68
gi|39930571 leucine rich repeat containing 56 [Homo sapiens] 33 0.89
gi|239757729 PREDICTED: hypothetical protein [Homo sapiens] 33 0.89
gi|239752222 PREDICTED: hypothetical protein [Homo sapiens] 33 0.89
gi|239746743 PREDICTED: hypothetical protein [Homo sapiens] 33 0.89
gi|193804858 hypothetical protein LOC100128124 [Homo sapiens] 33 0.89
gi|239755481 PREDICTED: similar to Putative uncharacterized prot... 32 1.2
gi|59938776 cAMP responsive element binding protein 5 isoform de... 32 1.2
>gi|239748993 PREDICTED: hypothetical protein XP_002346876 [Homo
sapiens]
Length = 552
Score = 1181 bits (3054), Expect = 0.0
Identities = 552/552 (100%), Positives = 552/552 (100%)
Query: 1 MPAGVLPLSQIHFLTGQTNLTVTRTNAAVCYAAHAVNGDEGYEGPRDFDQSGVKEIQPSA 60
MPAGVLPLSQIHFLTGQTNLTVTRTNAAVCYAAHAVNGDEGYEGPRDFDQSGVKEIQPSA
Sbjct: 1 MPAGVLPLSQIHFLTGQTNLTVTRTNAAVCYAAHAVNGDEGYEGPRDFDQSGVKEIQPSA 60
Query: 61 WASVLILPGETHRNAPHHRYIRMKVRFLRRGVRNSSTCNLGRLVITEQPEQYKWWEALAP 120
WASVLILPGETHRNAPHHRYIRMKVRFLRRGVRNSSTCNLGRLVITEQPEQYKWWEALAP
Sbjct: 61 WASVLILPGETHRNAPHHRYIRMKVRFLRRGVRNSSTCNLGRLVITEQPEQYKWWEALAP 120
Query: 121 RSPMRYACGKPQALCSPMHHACGKPRALCSPMHHACGKPRALLIPMHHACGKPRALLIPM 180
RSPMRYACGKPQALCSPMHHACGKPRALCSPMHHACGKPRALLIPMHHACGKPRALLIPM
Sbjct: 121 RSPMRYACGKPQALCSPMHHACGKPRALCSPMHHACGKPRALLIPMHHACGKPRALLIPM 180
Query: 181 HHACGKPQAPLIPMHHACGKPRDQLIPMRHACGKPRDQLIPMRHACRKPRDQLIPMRHAC 240
HHACGKPQAPLIPMHHACGKPRDQLIPMRHACGKPRDQLIPMRHACRKPRDQLIPMRHAC
Sbjct: 181 HHACGKPQAPLIPMHHACGKPRDQLIPMRHACGKPRDQLIPMRHACRKPRDQLIPMRHAC 240
Query: 241 GKPRDQLIPMRHECGKRRAPRSPMRYACGHHGLWKTACRRPPLQETGPSRGQKAQPEGWP 300
GKPRDQLIPMRHECGKRRAPRSPMRYACGHHGLWKTACRRPPLQETGPSRGQKAQPEGWP
Sbjct: 241 GKPRDQLIPMRHECGKRRAPRSPMRYACGHHGLWKTACRRPPLQETGPSRGQKAQPEGWP 300
Query: 301 APLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLTVAFRVCS 360
APLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLTVAFRVCS
Sbjct: 301 APLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLTVAFRVCS 360
Query: 361 FTICTPLCLLQDSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPLP 420
FTICTPLCLLQDSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPLP
Sbjct: 361 FTICTPLCLLQDSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPLP 420
Query: 421 VSCSGIWRSSFQESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQGVYTAEGA 480
VSCSGIWRSSFQESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQGVYTAEGA
Sbjct: 421 VSCSGIWRSSFQESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQGVYTAEGA 480
Query: 481 LVPVHFIAPALAKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRCETQEDDA 540
LVPVHFIAPALAKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRCETQEDDA
Sbjct: 481 LVPVHFIAPALAKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRCETQEDDA 540
Query: 541 HTDGRKGSRQQA 552
HTDGRKGSRQQA
Sbjct: 541 HTDGRKGSRQQA 552
>gi|239743015 PREDICTED: hypothetical protein XP_002342718 [Homo
sapiens]
Length = 552
Score = 1175 bits (3040), Expect = 0.0
Identities = 551/552 (99%), Positives = 551/552 (99%)
Query: 1 MPAGVLPLSQIHFLTGQTNLTVTRTNAAVCYAAHAVNGDEGYEGPRDFDQSGVKEIQPSA 60
MPAGVLPLSQIHFLTGQTNLTVTRTNAAVCYAAHAVNGDEGYEGPRDFDQSGVKEIQPSA
Sbjct: 1 MPAGVLPLSQIHFLTGQTNLTVTRTNAAVCYAAHAVNGDEGYEGPRDFDQSGVKEIQPSA 60
Query: 61 WASVLILPGETHRNAPHHRYIRMKVRFLRRGVRNSSTCNLGRLVITEQPEQYKWWEALAP 120
WASVLILPGETHRNAPHHRYIRMKVRFLRRGVRNSSTCNLGRLVITEQPEQYK WEALAP
Sbjct: 61 WASVLILPGETHRNAPHHRYIRMKVRFLRRGVRNSSTCNLGRLVITEQPEQYKRWEALAP 120
Query: 121 RSPMRYACGKPQALCSPMHHACGKPRALCSPMHHACGKPRALLIPMHHACGKPRALLIPM 180
RSPMRYACGKPQALCSPMHHACGKPRALCSPMHHACGKPRALLIPMHHACGKPRALLIPM
Sbjct: 121 RSPMRYACGKPQALCSPMHHACGKPRALCSPMHHACGKPRALLIPMHHACGKPRALLIPM 180
Query: 181 HHACGKPQAPLIPMHHACGKPRDQLIPMRHACGKPRDQLIPMRHACRKPRDQLIPMRHAC 240
HHACGKPQAPLIPMHHACGKPRDQLIPMRHACGKPRDQLIPMRHACRKPRDQLIPMRHAC
Sbjct: 181 HHACGKPQAPLIPMHHACGKPRDQLIPMRHACGKPRDQLIPMRHACRKPRDQLIPMRHAC 240
Query: 241 GKPRDQLIPMRHECGKRRAPRSPMRYACGHHGLWKTACRRPPLQETGPSRGQKAQPEGWP 300
GKPRDQLIPMRHECGKRRAPRSPMRYACGHHGLWKTACRRPPLQETGPSRGQKAQPEGWP
Sbjct: 241 GKPRDQLIPMRHECGKRRAPRSPMRYACGHHGLWKTACRRPPLQETGPSRGQKAQPEGWP 300
Query: 301 APLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLTVAFRVCS 360
APLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLTVAFRVCS
Sbjct: 301 APLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLTVAFRVCS 360
Query: 361 FTICTPLCLLQDSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPLP 420
FTICTPLCLLQDSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPLP
Sbjct: 361 FTICTPLCLLQDSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPLP 420
Query: 421 VSCSGIWRSSFQESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQGVYTAEGA 480
VSCSGIWRSSFQESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQGVYTAEGA
Sbjct: 421 VSCSGIWRSSFQESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQGVYTAEGA 480
Query: 481 LVPVHFIAPALAKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRCETQEDDA 540
LVPVHFIAPALAKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRCETQEDDA
Sbjct: 481 LVPVHFIAPALAKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRCETQEDDA 540
Query: 541 HTDGRKGSRQQA 552
HTDGRKGSRQQA
Sbjct: 541 HTDGRKGSRQQA 552
>gi|239754442 PREDICTED: hypothetical protein [Homo sapiens]
Length = 319
Score = 501 bits (1291), Expect = e-142
Identities = 240/241 (99%), Positives = 240/241 (99%)
Query: 312 HHRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLTVAFRVCSFTICTPLCLLQ 371
H RAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLTVAFRVCSFTICTPLCLLQ
Sbjct: 79 HSRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLTVAFRVCSFTICTPLCLLQ 138
Query: 372 DSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPLPVSCSGIWRSSF 431
DSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPLPVSCSGIWRSSF
Sbjct: 139 DSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPLPVSCSGIWRSSF 198
Query: 432 QESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQGVYTAEGALVPVHFIAPAL 491
QESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQGVYTAEGALVPVHFIAPAL
Sbjct: 199 QESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQGVYTAEGALVPVHFIAPAL 258
Query: 492 AKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRCETQEDDAHTDGRKGSRQQ 551
AKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRCETQEDDAHTDGRKGSRQQ
Sbjct: 259 AKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRCETQEDDAHTDGRKGSRQQ 318
Query: 552 A 552
A
Sbjct: 319 A 319
>gi|239746069 PREDICTED: hypothetical protein XP_002343649 [Homo
sapiens]
Length = 140
Score = 41.2 bits (95), Expect = 0.002
Identities = 25/99 (25%), Positives = 43/99 (43%)
Query: 154 HACGKPRALLIPMHHACGKPRALLIPMHHACGKPQAPLIPMHHACGKPRDQLIPMRHACG 213
H+ P +I H+ P +I H+ P +I H+ P ++I RH+
Sbjct: 34 HSAVAPGGKMIVESHSAVAPGGRMIVERHSAVAPGGKMIVESHSAVAPGGRMIVERHSVV 93
Query: 214 KPRDQLIPMRHACRKPRDQLIPMRHACGKPRDQLIPMRH 252
++I RH+ P ++I RH+ P ++I RH
Sbjct: 94 ALGGRMIVKRHSAVAPGGKMIVERHSAVAPGGRMIVERH 132
Score = 38.5 bits (88), Expect = 0.016
Identities = 24/99 (24%), Positives = 42/99 (42%)
Query: 154 HACGKPRALLIPMHHACGKPRALLIPMHHACGKPQAPLIPMHHACGKPRDQLIPMRHACG 213
H+ P +I H+ P +I H+ P +I H+ P ++I RH+
Sbjct: 6 HSVVAPGGKMIVERHSAVAPGGKMIVESHSAVAPGGKMIVESHSAVAPGGRMIVERHSAV 65
Query: 214 KPRDQLIPMRHACRKPRDQLIPMRHACGKPRDQLIPMRH 252
P ++I H+ P ++I RH+ ++I RH
Sbjct: 66 APGGKMIVESHSAVAPGGRMIVERHSVVALGGRMIVKRH 104
Score = 38.5 bits (88), Expect = 0.016
Identities = 24/99 (24%), Positives = 42/99 (42%)
Query: 154 HACGKPRALLIPMHHACGKPRALLIPMHHACGKPQAPLIPMHHACGKPRDQLIPMRHACG 213
H+ P +I H+ P +I H+ P +I H+ P ++I H+
Sbjct: 20 HSAVAPGGKMIVESHSAVAPGGKMIVESHSAVAPGGRMIVERHSAVAPGGKMIVESHSAV 79
Query: 214 KPRDQLIPMRHACRKPRDQLIPMRHACGKPRDQLIPMRH 252
P ++I RH+ ++I RH+ P ++I RH
Sbjct: 80 APGGRMIVERHSVVALGGRMIVKRHSAVAPGGKMIVERH 118
Score = 35.8 bits (81), Expect = 0.10
Identities = 22/90 (24%), Positives = 38/90 (42%)
Query: 154 HACGKPRALLIPMHHACGKPRALLIPMHHACGKPQAPLIPMHHACGKPRDQLIPMRHACG 213
H+ P +I H+ P +I H+ P +I H+ ++I RH+
Sbjct: 48 HSAVAPGGRMIVERHSAVAPGGKMIVESHSAVAPGGRMIVERHSVVALGGRMIVKRHSAV 107
Query: 214 KPRDQLIPMRHACRKPRDQLIPMRHACGKP 243
P ++I RH+ P ++I RH+ P
Sbjct: 108 APGGKMIVERHSAVAPGGRMIVERHSVVAP 137
Score = 29.6 bits (65), Expect = 7.5
Identities = 20/90 (22%), Positives = 34/90 (37%)
Query: 140 HACGKPRALCSPMHHACGKPRALLIPMHHACGKPRALLIPMHHACGKPQAPLIPMHHACG 199
H+ P H+ P +I H+ P +I H+ +I H+
Sbjct: 48 HSAVAPGGRMIVERHSAVAPGGKMIVESHSAVAPGGRMIVERHSVVALGGRMIVKRHSAV 107
Query: 200 KPRDQLIPMRHACGKPRDQLIPMRHACRKP 229
P ++I RH+ P ++I RH+ P
Sbjct: 108 APGGKMIVERHSAVAPGGRMIVERHSVVAP 137
>gi|239508790 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 490
Score = 38.1 bits (87), Expect = 0.021
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 1/96 (1%)
Query: 153 HHACGKPRALLIPMHHACGKPRALLIPMHHACGKPQAPLIPMHHACGKPRDQLIPMRHAC 212
H++ P L+P HH L+ H P PL+ +HH P L+ H
Sbjct: 13 HYSVVSPHCPLVPPHHPLVSLHHPLVSPHFPLVSPHHPLVSLHHPV-SPHFPLVSPHHPL 71
Query: 213 GKPRDQLIPMRHACRKPRDQLIPMRHACGKPRDQLI 248
P L+ +++ P L+ ++ P L+
Sbjct: 72 MSPHYSLVSPQYSPVSPHCPLVSPHYSLVSPHRPLV 107
Score = 37.0 bits (84), Expect = 0.047
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 1/96 (1%)
Query: 139 HHACGKPRALCSPMHHACGKPRALLIPMHHACGKPRALLIPMHHACGKPQAPLIPMHHAC 198
H++ P P HH L+ H P L+ +HH P PL+ HH
Sbjct: 13 HYSVVSPHCPLVPPHHPLVSLHHPLVSPHFPLVSPHHPLVSLHHPV-SPHFPLVSPHHPL 71
Query: 199 GKPRDQLIPMRHACGKPRDQLIPMRHACRKPRDQLI 234
P L+ +++ P L+ ++ P L+
Sbjct: 72 MSPHYSLVSPQYSPVSPHCPLVSPHYSLVSPHRPLV 107
Score = 35.8 bits (81), Expect = 0.10
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Query: 159 PRALLIPMHHACGKPRALLIPMHHACGKPQAPLIPMHHACGKPRDQLIPMRHACGKPRDQ 218
P ++ H++ P L+P HH PL+ H P L+ + H P
Sbjct: 5 PYCPVVSTHYSVVSPHCPLVPPHHPLVSLHHPLVSPHFPLVSPHHPLVSLHHPV-SPHFP 63
Query: 219 LIPMRHACRKPRDQLIPMRHACGKPRDQLI 248
L+ H P L+ +++ P L+
Sbjct: 64 LVSPHHPLMSPHYSLVSPQYSPVSPHCPLV 93
>gi|4505349 necdin [Homo sapiens]
Length = 321
Score = 37.4 bits (85), Expect = 0.036
Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 13/68 (19%)
Query: 281 PPLQETGPSRGQKAQP-------EGWPAPLPRRQEEGPHHRAHASPSLWGPGPIKPGPRT 333
PPL GP+ +A P EG P L + EEG RAH +PS PGP P P
Sbjct: 44 PPL---GPTAAPQAAPPPQAPNDEGDPKALQQAAEEG---RAHQAPSAAQPGPAPPAPAQ 97
Query: 334 HQTKAPEI 341
KA E+
Sbjct: 98 LVQKAHEL 105
>gi|239746071 PREDICTED: hypothetical protein XP_002343650 [Homo
sapiens]
Length = 168
Score = 36.2 bits (82), Expect = 0.080
Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 9/164 (5%)
Query: 92 VRNSSTCNLGRLVITEQPEQYKWWEALAPRSPM---RYACGKPQALCSPMHHACGKPRAL 148
V S LGR +I E+ +AP M R++ P + H+ P
Sbjct: 3 VERHSVVALGRRMIVERHS------VVAPGGKMIVERHSAVAPAGKMTVERHSAVAPAGR 56
Query: 149 CSPMHHACGKPRALLIPMHHACGKPRALLIPMHHACGKPQAPLIPMHHACGKPRDQLIPM 208
H+ P +I H+ P +I H+ P +I H+ ++I
Sbjct: 57 MIVERHSAVAPGGRMIVESHSAVAPGGRMIVESHSAVAPGGRMIVERHSVVALGGRVILE 116
Query: 209 RHACGKPRDQLIPMRHACRKPRDQLIPMRHACGKPRDQLIPMRH 252
RH+ ++I RH+ ++I RH+ P ++I RH
Sbjct: 117 RHSVVALGGRMIVERHSVVALGGRVILERHSAVAPGGRMIVERH 160
Score = 33.1 bits (74), Expect = 0.68
Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Query: 162 LLIPMHHACGKPRALLIPMHHACGKPQAPLIPMHHACGKPRDQLIPMRHACGKPRDQLIP 221
+ + H R +++ H P +I H+ P ++ RH+ P ++I
Sbjct: 1 MTVERHSVVALGRRMIVERHSVVA-PGGKMIVERHSAVAPAGKMTVERHSAVAPAGRMIV 59
Query: 222 MRHACRKPRDQLIPMRHACGKPRDQLIPMRH 252
RH+ P ++I H+ P ++I H
Sbjct: 60 ERHSAVAPGGRMIVESHSAVAPGGRMIVESH 90
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 35.8 bits (81), Expect = 0.10
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 10/55 (18%)
Query: 295 QPEGWPAPLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSG 349
QPEG AP P A SP+ P PI P P+ T+A E AAW +G
Sbjct: 24 QPEGTDAPGP----------AVCSPTARAPPPILPAPQRPPTRAREWEGAAWAAG 68
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 35.8 bits (81), Expect = 0.10
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 281 PPLQETGPSRGQKAQPEGWPAPLPRRQEEGPHHRAHASPSLWGPGPIKP---GPRTHQTK 337
PPLQ S GQ + P PL + GP H A P L PGP +P P+ Q +
Sbjct: 270 PPLQPLTGSAGQPSAPSHAQPPLHGQGPPGP-HSLQAGPLLQHPGPPQPFGLPPQASQGQ 328
Query: 338 AP 339
AP
Sbjct: 329 AP 330
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 35.8 bits (81), Expect = 0.10
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 281 PPLQETGPSRGQKAQPEGWPAPLPRRQEEGPHHRAHASPSLWGPGPIKP---GPRTHQTK 337
PPLQ S GQ + P PL + GP H A P L PGP +P P+ Q +
Sbjct: 824 PPLQPLTGSAGQPSAPSHAQPPLHGQGPPGP-HSLQAGPLLQHPGPPQPFGLPPQASQGQ 882
Query: 338 AP 339
AP
Sbjct: 883 AP 884
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 35.8 bits (81), Expect = 0.10
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 281 PPLQETGPSRGQKAQPEGWPAPLPRRQEEGPHHRAHASPSLWGPGPIKP---GPRTHQTK 337
PPLQ S GQ + P PL + GP H A P L PGP +P P+ Q +
Sbjct: 824 PPLQPLTGSAGQPSAPSHAQPPLHGQGPPGP-HSLQAGPLLQHPGPPQPFGLPPQASQGQ 882
Query: 338 AP 339
AP
Sbjct: 883 AP 884
>gi|208431781 cyclic nucleotide gated channel beta 1 isoform b [Homo
sapiens]
Length = 299
Score = 35.0 bits (79), Expect = 0.18
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 300 PAPLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTKAPE 340
PAP R QE GP +A +PSL P P++P + APE
Sbjct: 194 PAPPGRPQEMGPKLQARETPSLPTPIPLQPKEEPKEAPAPE 234
>gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [Homo
sapiens]
Length = 1251
Score = 35.0 bits (79), Expect = 0.18
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 300 PAPLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTKAPE 340
PAP R QE GP +A +PSL P P++P + APE
Sbjct: 194 PAPPGRPQEMGPKLQARETPSLPTPIPLQPKEEPKEAPAPE 234
>gi|61175248 spermidine/spermine N1-acetyl transferase-like 1 [Homo
sapiens]
Length = 445
Score = 35.0 bits (79), Expect = 0.18
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 260 PRSPMRYACGHHGLWKTACRRPPLQETGPSRGQKAQPEGWPAPLPRRQEEGPHHRAHASP 319
PR P + G+W+ +P + + PS+ QP + + G H P
Sbjct: 239 PRQPNK---SPPGMWQRGMWQPGMSQQVPSQLGMRQPG---TSQSSKNQTGMSHPGRGQP 292
Query: 320 SLWGPGPIKPG 330
+W PGP +PG
Sbjct: 293 GIWEPGPSQPG 303
>gi|239744358 PREDICTED: hypothetical protein XP_002343105 [Homo
sapiens]
Length = 767
Score = 34.7 bits (78), Expect = 0.23
Identities = 32/101 (31%), Positives = 39/101 (38%), Gaps = 15/101 (14%)
Query: 258 RAPRSPMRYACGH-HGLWKTACRRPPLQETGPSRGQKAQPEGWPAPLPRRQEEGPHH--- 313
RAP R GH H K P QE G+K Q E P R+ EG +
Sbjct: 101 RAPAVGCRQRSGHLHVRLKQRLLERPCQEP---LGKKYQLELPPLYERARKPEGSKNLPA 157
Query: 314 --------RAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAW 346
RA A+ +W GP +PGP + A HQ W
Sbjct: 158 DGQGLRAVRADAALPVWPGGPGRPGPHAPEAGAEGQHQGQW 198
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 34.3 bits (77), Expect = 0.31
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 122 SPMRYACGKPQALCSPMHHACGKPRALCSPMHHACGK--PRALLIPMHHACGKP-RALLI 178
SP +A G+P +P+H AC P C H CGK P+ + H A P R L
Sbjct: 3284 SPDPWAGGEPLLQATPVHEACKDPSRDC----HHCGKRFPKPFKLQRHLAVHSPQRVYLC 3339
Query: 179 P----MHHACGKPQAPLIPMHHACGKPRDQLIPMRHAC 212
P ++ G+ A L H +P Q P+ +AC
Sbjct: 3340 PRCPRVYPEHGELLAHLGGAHGLLERPELQHTPL-YAC 3376
>gi|31543543 retinoic acid induced 17 [Homo sapiens]
Length = 1067
Score = 33.5 bits (75), Expect = 0.52
Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 282 PLQETGPSRGQKAQP-----EGWPAPLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQT 336
P+QET P G QP +G P P Q P H + A P P P +P PR
Sbjct: 941 PMQETMPHAGSSDQPHPSIQQGLHVPHPSSQSGPPLHHSGAPP----PPPSQP-PRQPPQ 995
Query: 337 KAPEIH 342
AP H
Sbjct: 996 AAPSSH 1001
>gi|169217599 PREDICTED: hypothetical protein [Homo sapiens]
Length = 322
Score = 33.1 bits (74), Expect = 0.68
Identities = 35/121 (28%), Positives = 45/121 (37%), Gaps = 20/121 (16%)
Query: 260 PRSPMRYACGHHGLWKTACRRPPL----QETGPSRGQKAQPEGWPAPLPRRQEEGPHHRA 315
P P R G +G W+ A PL + G + G + E P P P Q+E
Sbjct: 47 PLGPWRLLRGPNGTWRKAFITSPLGTVHRVPGAASGTEVNAEAIPPP-PDPQDERAFREE 105
Query: 316 HA----------SPSLWGPGPIKPGPRTHQTKA-PEIHQAAWLSGFSLTVAFRVCSFTIC 364
A SP GP PG R ++A PE Q W LTV+ + C
Sbjct: 106 SAVSQEGVTAVHSPLTTGP----PGRRVACSEAGPETPQHPWSLYSGLTVSSQELDLCFC 161
Query: 365 T 365
T
Sbjct: 162 T 162
>gi|239754512 PREDICTED: hypothetical protein [Homo sapiens]
Length = 556
Score = 33.1 bits (74), Expect = 0.68
Identities = 26/79 (32%), Positives = 30/79 (37%), Gaps = 14/79 (17%)
Query: 251 RHECGKRRAPRSPMRYACGHHGLWKTACRRPPLQETGPSRGQKAQPEGWPAPLPRRQEEG 310
RHE ++ PR P + W R P T RG P P PLP
Sbjct: 413 RHEAPEQGKPRLPPQ-------AWHDQGRDAPPGPTPARRGLPRPPPPPPPPLPPPPRRE 465
Query: 311 PHHRAHASPSLWGPGPIKP 329
P HRA W PGP +P
Sbjct: 466 PCHRA------W-PGPAQP 477
>gi|239749073 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 33.1 bits (74), Expect = 0.68
Identities = 26/79 (32%), Positives = 30/79 (37%), Gaps = 14/79 (17%)
Query: 251 RHECGKRRAPRSPMRYACGHHGLWKTACRRPPLQETGPSRGQKAQPEGWPAPLPRRQEEG 310
RHE ++ PR P + W R P T RG P P PLP
Sbjct: 741 RHEAPEQGKPRLPPQ-------AWHDQGRDAPPGPTPARRGLPRPPPPPPPPLPPPPRRE 793
Query: 311 PHHRAHASPSLWGPGPIKP 329
P HRA W PGP +P
Sbjct: 794 PCHRA------W-PGPAQP 805
>gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo
sapiens]
Length = 884
Score = 33.1 bits (74), Expect = 0.68
Identities = 26/79 (32%), Positives = 30/79 (37%), Gaps = 14/79 (17%)
Query: 251 RHECGKRRAPRSPMRYACGHHGLWKTACRRPPLQETGPSRGQKAQPEGWPAPLPRRQEEG 310
RHE ++ PR P + W R P T RG P P PLP
Sbjct: 741 RHEAPEQGKPRLPPQ-------AWHDQGRDAPPGPTPARRGLPRPPPPPPPPLPPPPRRE 793
Query: 311 PHHRAHASPSLWGPGPIKP 329
P HRA W PGP +P
Sbjct: 794 PCHRA------W-PGPAQP 805
>gi|239508751 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 33.1 bits (74), Expect = 0.68
Identities = 26/79 (32%), Positives = 30/79 (37%), Gaps = 14/79 (17%)
Query: 251 RHECGKRRAPRSPMRYACGHHGLWKTACRRPPLQETGPSRGQKAQPEGWPAPLPRRQEEG 310
RHE ++ PR P + W R P T RG P P PLP
Sbjct: 741 RHEAPEQGKPRLPPQ-------AWHDQGRDAPPGPTPARRGLPRPPPPPPPPLPPPPRRE 793
Query: 311 PHHRAHASPSLWGPGPIKP 329
P HRA W PGP +P
Sbjct: 794 PCHRA------W-PGPAQP 805
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 33.1 bits (74), Expect = 0.68
Identities = 47/242 (19%), Positives = 79/242 (32%), Gaps = 30/242 (12%)
Query: 116 EALAP---RSPMRYACGKPQALCSPMHHACGKPRALCSPMHHACGKPRALLIPMHHACGK 172
EA +P +SP++ P+ SP+ P SP+ P P+
Sbjct: 659 EAKSPEKAKSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKS 718
Query: 173 PRALLIPMHHACGKPQAPLIPMHHACGKPRDQLIPMRHAC--GKPRDQLIPMRHACRKPR 230
P P+ P+ P+ P P + K + P + R P
Sbjct: 719 PEKAKSPVKEEAKTPEKAKSPVKEEAKSPEKAKSPEKAKTLDVKSPEAKTPAKEEARSPA 778
Query: 231 DQLIPMRHACGKPRDQLIPMRHECGKRRAPRSPMR---YACGHHGLWKTACRRPPLQETG 287
D+ P P++ E +SP++ A K + P +E
Sbjct: 779 DKF---------PEKAKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKKEEVKSPVKEEEK 829
Query: 288 PSR------GQKAQPEGWPAPLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTKAPEI 341
P +KA+ E PA P+ +E+ + A P P P+ + K P +
Sbjct: 830 PQEVKVKEPPKKAEEEKAPA-TPKTEEKKDSKKEEA------PKKEAPKPKVEEKKEPAV 882
Query: 342 HQ 343
+
Sbjct: 883 EK 884
>gi|39930571 leucine rich repeat containing 56 [Homo sapiens]
Length = 542
Score = 32.7 bits (73), Expect = 0.89
Identities = 30/116 (25%), Positives = 40/116 (34%), Gaps = 11/116 (9%)
Query: 229 PRDQLIPMRHA-----CGKPRDQLIPMRHECGKRRAPRSPMRYACGHHGLWKTACRRPPL 283
P D + H CG P L RH+C R P ++ G + P
Sbjct: 315 PEDNTSSLTHGAGQVLCGNPTKGLRERRHQCQAREPPEQLPQHRPGDPAASTSTPEPDPA 374
Query: 284 QETG--PSRGQKAQPEGWPAPLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTK 337
+ G +A E PLP R E A A WGP + P + HQ +
Sbjct: 375 DSSDFLALAGLRAWREHGVRPLPYRHPESQQEGAVAP---WGPRRV-PEEQVHQAE 426
>gi|239757729 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 32.7 bits (73), Expect = 0.89
Identities = 61/246 (24%), Positives = 82/246 (33%), Gaps = 59/246 (23%)
Query: 120 PRSPMRYACGKPQALCSPMHHACGKPRALCSPMHHACGKPRALLIPMHHACGKPRALLIP 179
P SP R G+P P C +P C P +PR H + ALL
Sbjct: 74 PCSPRRGRRGRPTQEVCPAPGPCAQPAGTCPPPPTGEKQPRPHGFRCSHGSKRAPALL-- 131
Query: 180 MHHACGKPQAPLIPMHHACGKPR-DQLIPMRHACGKPRDQLIP---MRHACRKPRDQLIP 235
G P P H +PR +L P+ +P +P + A R L P
Sbjct: 132 -----GAPARR--PPAHIPAQPRWPRLQPVAKRRARPVPPGLPGAPKQAALTPGRRPLTP 184
Query: 236 MRHACGKPRDQLIPMRHECGKRRAPRSPMRYACGHHGLWKTACRRPPLQETGPSR----- 290
A RDQ + T C+R ++ETGP+R
Sbjct: 185 AAFAPKASRDQQVTDS-----------------------TTICQRGLIEETGPARQISDL 221
Query: 291 -----GQKA-QPEGWPAPL--PRRQEEGPH---HRAHASPSLWGPGPI-------KPGPR 332
G A + G P+ L R Q PH + +SPS W P +PG
Sbjct: 222 CEVSQGVGAFRAGGCPSSLASSREQTHSPHLYPSPSSSSPSSWEAPPANSVTPRGRPGIP 281
Query: 333 THQTKA 338
H+ A
Sbjct: 282 AHKLGA 287
Score = 32.0 bits (71), Expect = 1.5
Identities = 42/159 (26%), Positives = 60/159 (37%), Gaps = 19/159 (11%)
Query: 201 PRDQLIPMRHACGKPRDQLIPMRHACRKPRDQ-LIPMRHACGKPRDQLIPMRHECGKRRA 259
P ++++ + KP+DQ P RD L P R PR P+ E G + +
Sbjct: 2 PTERILNLYGKNYKPQDQSPPSPQ-----RDSGLTPERDRPDWPRSFKPPLSPEKGTKAS 56
Query: 260 PRSPMRYACGHHGLWKTAC------RRPPLQETGPSRGQKAQPEG-WPAPLPRRQEEGPH 312
+ GL C R P QE P+ G AQP G P P ++ PH
Sbjct: 57 GPQTSAPSPRDPGLHTPPCSPRRGRRGRPTQEVCPAPGPCAQPAGTCPPPPTGEKQPRPH 116
Query: 313 -----HRAHASPSLWG-PGPIKPGPRTHQTKAPEIHQAA 345
H + +P+L G P P Q + P + A
Sbjct: 117 GFRCSHGSKRAPALLGAPARRPPAHIPAQPRWPRLQPVA 155
>gi|239752222 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 32.7 bits (73), Expect = 0.89
Identities = 61/246 (24%), Positives = 82/246 (33%), Gaps = 59/246 (23%)
Query: 120 PRSPMRYACGKPQALCSPMHHACGKPRALCSPMHHACGKPRALLIPMHHACGKPRALLIP 179
P SP R G+P P C +P C P +PR H + ALL
Sbjct: 74 PCSPRRGRRGRPTQEVCPAPGPCAQPAGTCPPPPTGEKQPRPHGFRCSHGSKRAPALL-- 131
Query: 180 MHHACGKPQAPLIPMHHACGKPR-DQLIPMRHACGKPRDQLIP---MRHACRKPRDQLIP 235
G P P H +PR +L P+ +P +P + A R L P
Sbjct: 132 -----GAPARR--PPAHIPAQPRWPRLQPVAKRRARPVPPGLPGAPKQAALTPGRRPLTP 184
Query: 236 MRHACGKPRDQLIPMRHECGKRRAPRSPMRYACGHHGLWKTACRRPPLQETGPSR----- 290
A RDQ + T C+R ++ETGP+R
Sbjct: 185 AAFAPKASRDQQVTDS-----------------------TTICQRGLIEETGPARQISDL 221
Query: 291 -----GQKA-QPEGWPAPL--PRRQEEGPH---HRAHASPSLWGPGPI-------KPGPR 332
G A + G P+ L R Q PH + +SPS W P +PG
Sbjct: 222 CEVSQGVGAFRAGGCPSSLASSREQTHSPHLYPSPSSSSPSSWEAPPANSVTPRGRPGIP 281
Query: 333 THQTKA 338
H+ A
Sbjct: 282 AHKLGA 287
Score = 32.0 bits (71), Expect = 1.5
Identities = 42/159 (26%), Positives = 60/159 (37%), Gaps = 19/159 (11%)
Query: 201 PRDQLIPMRHACGKPRDQLIPMRHACRKPRDQ-LIPMRHACGKPRDQLIPMRHECGKRRA 259
P ++++ + KP+DQ P RD L P R PR P+ E G + +
Sbjct: 2 PTERILNLYGKNYKPQDQSPPSPQ-----RDSGLTPERDRPDWPRSFKPPLSPEKGTKAS 56
Query: 260 PRSPMRYACGHHGLWKTAC------RRPPLQETGPSRGQKAQPEG-WPAPLPRRQEEGPH 312
+ GL C R P QE P+ G AQP G P P ++ PH
Sbjct: 57 GPQTSAPSPRDPGLHTPPCSPRRGRRGRPTQEVCPAPGPCAQPAGTCPPPPTGEKQPRPH 116
Query: 313 -----HRAHASPSLWG-PGPIKPGPRTHQTKAPEIHQAA 345
H + +P+L G P P Q + P + A
Sbjct: 117 GFRCSHGSKRAPALLGAPARRPPAHIPAQPRWPRLQPVA 155
>gi|239746743 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 32.7 bits (73), Expect = 0.89
Identities = 61/246 (24%), Positives = 82/246 (33%), Gaps = 59/246 (23%)
Query: 120 PRSPMRYACGKPQALCSPMHHACGKPRALCSPMHHACGKPRALLIPMHHACGKPRALLIP 179
P SP R G+P P C +P C P +PR H + ALL
Sbjct: 74 PCSPRRGRRGRPTQEVCPAPGPCAQPAGTCPPPPTGEKQPRPHGFRCSHGSKRAPALL-- 131
Query: 180 MHHACGKPQAPLIPMHHACGKPR-DQLIPMRHACGKPRDQLIP---MRHACRKPRDQLIP 235
G P P H +PR +L P+ +P +P + A R L P
Sbjct: 132 -----GAPARR--PPAHIPAQPRWPRLQPVAKRRARPVPPGLPGAPKQAALTPGRRPLTP 184
Query: 236 MRHACGKPRDQLIPMRHECGKRRAPRSPMRYACGHHGLWKTACRRPPLQETGPSR----- 290
A RDQ + T C+R ++ETGP+R
Sbjct: 185 AAFAPKASRDQQVTDS-----------------------TTICQRGLIEETGPARQISDL 221
Query: 291 -----GQKA-QPEGWPAPL--PRRQEEGPH---HRAHASPSLWGPGPI-------KPGPR 332
G A + G P+ L R Q PH + +SPS W P +PG
Sbjct: 222 CEVSQGVGAFRAGGCPSSLASSREQTHSPHLYPSPSSSSPSSWEAPPANSVTPRGRPGIP 281
Query: 333 THQTKA 338
H+ A
Sbjct: 282 AHKLGA 287
Score = 32.0 bits (71), Expect = 1.5
Identities = 42/159 (26%), Positives = 60/159 (37%), Gaps = 19/159 (11%)
Query: 201 PRDQLIPMRHACGKPRDQLIPMRHACRKPRDQ-LIPMRHACGKPRDQLIPMRHECGKRRA 259
P ++++ + KP+DQ P RD L P R PR P+ E G + +
Sbjct: 2 PTERILNLYGKNYKPQDQSPPSPQ-----RDSGLTPERDRPDWPRSFKPPLSPEKGTKAS 56
Query: 260 PRSPMRYACGHHGLWKTAC------RRPPLQETGPSRGQKAQPEG-WPAPLPRRQEEGPH 312
+ GL C R P QE P+ G AQP G P P ++ PH
Sbjct: 57 GPQTSAPSPRDPGLHTPPCSPRRGRRGRPTQEVCPAPGPCAQPAGTCPPPPTGEKQPRPH 116
Query: 313 -----HRAHASPSLWG-PGPIKPGPRTHQTKAPEIHQAA 345
H + +P+L G P P Q + P + A
Sbjct: 117 GFRCSHGSKRAPALLGAPARRPPAHIPAQPRWPRLQPVA 155
>gi|193804858 hypothetical protein LOC100128124 [Homo sapiens]
Length = 171
Score = 32.7 bits (73), Expect = 0.89
Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Query: 131 PQALCSPMHHACGKPRALCSPMHHACG--KPRALLIPMHHACGKPRALLIPMHHACGKPQ 188
P SP H G S H G P A P H P LL+P H P
Sbjct: 102 PTVFSSP--HTAGGMTPTASSSQHTAGVMTPTASSFPTHCRGNDPHCLLLPQHCRGNDPH 159
Query: 189 APLIPMHHACGK 200
L+P H G+
Sbjct: 160 CLLLPTHTLQGE 171
Score = 31.6 bits (70), Expect = 2.0
Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 126 YACGKPQALCSPMHHACG--KPRALCSPMHHACGKPRALLIPMHHACGKPRALLIPMHHA 183
+ G S H G P A P H P LL+P H P LL+P H
Sbjct: 109 HTAGGMTPTASSSQHTAGVMTPTASSFPTHCRGNDPHCLLLPQHCRGNDPHCLLLPTHTL 168
Query: 184 CGK 186
G+
Sbjct: 169 QGE 171
>gi|239755481 PREDICTED: similar to Putative uncharacterized protein
ENSP00000334305 [Homo sapiens]
Length = 771
Score = 32.3 bits (72), Expect = 1.2
Identities = 35/106 (33%), Positives = 41/106 (38%), Gaps = 21/106 (19%)
Query: 258 RAPRSPMRYACGH-HGLWKTACRRPPLQETGPSRGQKAQPEGWPAPLPRRQEEGPHH--- 313
RAP R GH H K P QE G+K Q E P R+ EG +
Sbjct: 101 RAPAVGCRQRSGHLHVRLKQRLLERPCQEP---LGKKYQLELPPLYERARKPEGSKNLPA 157
Query: 314 --------RAHASPSLWGPGPIKPGPRTHQTKAPEI-----HQAAW 346
RA A+ +W GP +PG R H APE HQ W
Sbjct: 158 DGQGLRAVRADAALPVWPGGPGRPGSRAH-LPAPEAGAEGQHQGQW 202
>gi|59938776 cAMP responsive element binding protein 5 isoform delta
[Homo sapiens]
Length = 369
Score = 32.3 bits (72), Expect = 1.2
Identities = 34/138 (24%), Positives = 49/138 (35%), Gaps = 20/138 (14%)
Query: 208 MRHACGKPRDQLIPMRHACRKPRDQLIPMRHACGKPRDQLIPMRH--ECGKRRAPRSPMR 265
+ + C P+ Q PM H+ K R + H + M H E R ++P
Sbjct: 77 LSNPCASPQVQ--PM-HSEAKMRLKAALTHHPAAMSNGNMNTMGHMMEMMGSRQDQTP-- 131
Query: 266 YACGHHGLWKTACRRPPLQETGPSRGQKAQPEGWPAPLPRRQEEGPHHRAHASPSLWGPG 325
HH + + L P Q P P P P Q+ PHH +H+
Sbjct: 132 ----HHHMHSHPHQHQTLPPHHPYPHQHQHPAHHPHPQPHHQQNHPHHHSHSH------- 180
Query: 326 PIKPGPRTHQTKA-PEIH 342
+ P HQT P +H
Sbjct: 181 -LHAHPAHHQTSPHPPLH 197
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.136 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,895,101
Number of Sequences: 37866
Number of extensions: 1595888
Number of successful extensions: 4540
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 4342
Number of HSP's gapped (non-prelim): 219
length of query: 552
length of database: 18,247,518
effective HSP length: 107
effective length of query: 445
effective length of database: 14,195,856
effective search space: 6317155920
effective search space used: 6317155920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.