Guide to the Human Genome
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Name: LOC100289444 Sequence: fasta or formatted (884aa) NCBI GI: 239749073
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {884aa} PREDICTED: hypothetical protein
alt prot {884aa} PREDICTED: hypothetical protein XP_002342754
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         74           2
 C cysteine            2.8         25           1
 D aspartate           1.8         16           1
 E glutamate           4.1         36           1
 F phenylalanine       2.6         23           2
 G glycine            11.5        102           3
 H histidine           2.3         20           2
 I isoleucine          3.2         28           1
 K lysine              3.7         33           2
 L leucine             8.5         75           2
 M methionine          1.1         10           1
 N asparagine          1.8         16           2
 P proline            11.5        102           8
 Q glutamine           4.3         38           2
 R arginine           13.3        118           5
 S serine              6.3         56           2
 T threonine           3.3         29           2
 V valine              6.2         55           3
 W tryptophan          2.3         20           2
 Y tyrosine            0.9          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289444          0.999   PREDICTED: hypothetical protein XP_002342754 
LOC100289444          0.999   PREDICTED: hypothetical protein 
LOC100293662          0.561   PREDICTED: hypothetical protein 
EMID1                 0.016   EMI domain containing 1 
WASL                  0.016   Wiskott-Aldrich syndrome gene-like protein 
ZNF341                0.015   zinc finger protein 341 
SFPQ                  0.015   splicing factor proline/glutamine rich (polypyrimidin...
PDCD7                 0.015   programmed cell death 7 
FMNL1                 0.015   formin-like 1 
WAS                   0.015   Wiskott-Aldrich syndrome protein 
PCLO                  0.015   piccolo isoform 2 
PCLO                  0.015   piccolo isoform 1 
SETD1B                0.015   SET domain containing 1B 
LMTK3                 0.015   lemur tyrosine kinase 3 
PRB1                  0.015   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB2                  0.014   proline-rich protein BstNI subfamily 2 
BAI1                  0.014   brain-specific angiogenesis inhibitor 1 precursor [...
C9orf75               0.014   hypothetical protein LOC286262 isoform 2 
C9orf75               0.014   hypothetical protein LOC286262 isoform 1 
FMNL2                 0.014   formin-like 2 
WASF2                 0.014   WAS protein family, member 2 
HCN2                  0.014   hyperpolarization activated cyclic nucleotide-gated...
MYO15A                0.014   myosin XV 
TAOK2                 0.014   TAO kinase 2 isoform 1 
ATN1                  0.013   atrophin-1 
ATN1                  0.013   atrophin-1 
MYST3                 0.013   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.013   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.013   MYST histone acetyltransferase (monocytic leukemia)...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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