Guide to the Human Genome
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Name: LOC100287903 Sequence: fasta or formatted (140aa) NCBI GI: 239746069
Description:

PREDICTED: hypothetical protein XP_002343649

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         17           1
 C cysteine            0.0          0           0
 D aspartate           0.0          0           0
 E glutamate           6.4          9           1
 F phenylalanine       0.0          0           0
 G glycine            14.3         20           2
 H histidine           7.1         10           1
 I isoleucine          6.4          9           1
 K lysine              4.3          6           1
 L leucine             0.7          1           1
 M methionine          7.1         10           1
 N asparagine          0.0          0           0
 P proline             6.4          9           1
 Q glutamine           0.0          0           0
 R arginine            7.9         11           1
 S serine              9.3         13           1
 T threonine           0.7          1           1
 V valine             17.1         24           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343649 
LOC100287936          0.844   PREDICTED: hypothetical protein XP_002343650 
HDAC6                 0.100   histone deacetylase 6 
LOC100289898          0.064   PREDICTED: hypothetical protein XP_002346876 
LOC100289162          0.064   PREDICTED: hypothetical protein XP_002342718 
LOC391343             0.044   hypothetical protein LOC391343 
LOC100289979          0.032   PREDICTED: hypothetical protein XP_002346878 
LOC100289273          0.032   PREDICTED: hypothetical protein XP_002342720 
LOC100134663          0.020   PREDICTED: hypothetical protein, partial 
EEF1A2                0.016   eukaryotic translation elongation factor 1 alpha 2 [H...
LOC100291351          0.012   PREDICTED: hypothetical protein XP_002347312 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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