Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100293694 Sequence: fasta or formatted (319aa) NCBI GI: 239754442
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         34           2
 C cysteine            3.1         10           1
 D aspartate           2.5          8           2
 E glutamate           3.4         11           1
 F phenylalanine       3.1         10           1
 G glycine             7.2         23           2
 H histidine           4.4         14           1
 I isoleucine          2.8          9           1
 K lysine              1.9          6           1
 L leucine            11.6         37           2
 M methionine          0.6          2           1
 N asparagine          1.9          6           1
 P proline            10.0         32           2
 Q glutamine           6.6         21           2
 R arginine            7.8         25           3
 S serine              7.8         25           2
 T threonine           5.6         18           1
 V valine              6.3         20           3
 W tryptophan          1.9          6           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289898          0.750   PREDICTED: hypothetical protein XP_002346876 
LOC100289162          0.750   PREDICTED: hypothetical protein XP_002342718 
AXIN2                 0.013   axin 2 
FOXD4L2               0.011   forkhead box D4-like 2 
SHF                   0.011   Src homology 2 domain containing F 
FOXD4L5               0.011   forkhead box D4-like 5 
FOXD4L6               0.011   forkhead box D4-like 6 
FOXD4L4               0.011   forkhead box D4-like 4 
NFATC3                0.011   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.011   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.011   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.011   nuclear factor of activated T-cells, cytoplasmic, cal...
LOC100292991          0.011   PREDICTED: hypothetical protein 
LOC100291148          0.011   PREDICTED: hypothetical protein XP_002346866 
TREX1                 0.011   three prime repair exonuclease 1 isoform a 
KLF2                  0.011   Kruppel-like factor 
ATXN2                 0.011   ataxin 2 
RICH2                 0.011   Rho GTPase-activating protein RICH2 
FAM189B               0.009   hypothetical protein LOC10712 isoform b 
FAM189B               0.009   hypothetical protein LOC10712 isoform a 
INPPL1                0.009   inositol polyphosphate phosphatase-like 1 
LOC643355             0.009   PREDICTED: hypothetical protein 
FLJ10357              0.009   hypothetical protein LOC55701 
DDI2                  0.009   DNA-damage inducible protein 2 
NAP5                  0.008   Nck-associated protein 5 isoform 1 
LOC100287484          0.008   PREDICTED: hypothetical protein XP_002343105 
MAP4K1                0.008   mitogen-activated protein kinase kinase kinase kina...
MAP4K1                0.008   mitogen-activated protein kinase kinase kinase kinase...
CECR2                 0.008   cat eye syndrome chromosome region, candidate 2 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press