Guide to the Human Genome
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Name: LOC100290737 Sequence: fasta or formatted (202aa) NCBI GI: 239748930
Description:

PREDICTED: hypothetical protein XP_002346860

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.9         24           3
 C cysteine            1.5          3           1
 D aspartate           1.5          3           1
 E glutamate           2.5          5           1
 F phenylalanine       4.0          8           1
 G glycine             9.9         20           3
 H histidine           2.5          5           1
 I isoleucine          3.0          6           1
 K lysine              2.5          5           1
 L leucine             7.4         15           1
 M methionine          1.5          3           1
 N asparagine          1.5          3           1
 P proline            15.8         32           4
 Q glutamine           5.0         10           1
 R arginine           11.4         23           2
 S serine              9.4         19           2
 T threonine           3.0          6           1
 V valine              5.0         10           1
 W tryptophan          1.0          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346860 
LOC100293521          1.000   PREDICTED: similar to hCG2038817 
LOC100287366          1.000   PREDICTED: hypothetical protein XP_002342703 
HCN4                  0.051   hyperpolarization activated cyclic nucleotide-gated p...
GGN                   0.048   gametogenetin 
TAF4                  0.046   TBP-associated factor 4 
PRB3                  0.043   proline-rich protein BstNI subfamily 3 precursor [H...
SHANK1                0.043   SH3 and multiple ankyrin repeat domains 1 
KIAA1522              0.041   hypothetical protein LOC57648 
LOC100292124          0.041   PREDICTED: hypothetical protein XP_002346387 
WASF2                 0.038   WAS protein family, member 2 
SF3B4                 0.038   splicing factor 3b, subunit 4 
SALL3                 0.038   sal-like 3 
COL3A1                0.036   collagen type III alpha 1 preproprotein 
SYN1                  0.036   synapsin I isoform Ia 
SYN1                  0.036   synapsin I isoform Ib 
TNKS                  0.036   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
WASF3                 0.036   WAS protein family, member 3 
SAMD1                 0.036   sterile alpha motif domain containing 1 
LOC100131102          0.033   PREDICTED: hypothetical protein 
PRB4                  0.033   proline-rich protein BstNI subfamily 4 precursor [Ho...
ZBTB4                 0.033   zinc finger and BTB domain containing 4 
ZBTB4                 0.033   zinc finger and BTB domain containing 4 
RICH2                 0.033   Rho GTPase-activating protein RICH2 
BAT2                  0.031   HLA-B associated transcript-2 
FLJ22184              0.031   PREDICTED: hypothetical protein FLJ22184 
ASAP2                 0.031   ArfGAP with SH3 domain, ankyrin repeat and PH domai...
ASAP2                 0.031   ArfGAP with SH3 domain, ankyrin repeat and PH domain ...
LOC389333             0.028   hypothetical protein LOC389333 
LOC100291609          0.028   PREDICTED: hypothetical protein XP_002346061 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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