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Search of human proteins with 239748649
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748649 PREDICTED: hypothetical protein [Homo sapiens]
(125 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754100 PREDICTED: hypothetical protein XP_002345880 [Homo ... 258 8e-70
gi|239748649 PREDICTED: hypothetical protein [Homo sapiens] 258 8e-70
gi|239742674 PREDICTED: hypothetical protein XP_002342580 [Homo ... 254 2e-68
gi|5729858 nuclear receptor coactivator 2 [Homo sapiens] 34 0.033
gi|169214887 PREDICTED: similar to hCG2017976 [Homo sapiens] 34 0.033
gi|169215118 PREDICTED: hypothetical protein [Homo sapiens] 34 0.033
gi|169214613 PREDICTED: similar to hCG2017976 [Homo sapiens] 34 0.033
gi|197276600 microtubule-associated protein 4 isoform 4 [Homo sa... 34 0.033
gi|47519639 microtubule-associated protein 4 isoform 1 [Homo sap... 34 0.033
gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 33 0.073
gi|189181722 proteoglycan 4 isoform C [Homo sapiens] 33 0.073
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 33 0.073
gi|8923887 zinc finger protein 395 [Homo sapiens] 33 0.073
gi|67190163 proteoglycan 4 isoform A [Homo sapiens] 33 0.073
gi|114431216 tumor protein p53 inducible protein 13 [Homo sapiens] 33 0.073
gi|18104952 T-box 1 isoform C [Homo sapiens] 32 0.095
gi|28376656 zinc finger, X-linked, duplicated B [Homo sapiens] 32 0.095
gi|163965366 nascent polypeptide-associated complex alpha subuni... 32 0.12
gi|239746480 PREDICTED: hypothetical protein XP_002343771 [Homo ... 32 0.16
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 31 0.21
gi|239755362 PREDICTED: hypothetical protein [Homo sapiens] 31 0.21
gi|31543148 hypothetical protein LOC79173 [Homo sapiens] 31 0.21
gi|48762934 alpha 2 type I collagen [Homo sapiens] 31 0.28
gi|169217788 PREDICTED: similar to putative DUX4 protein [Homo s... 30 0.36
gi|89062404 PREDICTED: similar to putative DUX4 protein [Homo sa... 30 0.36
gi|199559779 coiled-coil domain containing 8 [Homo sapiens] 30 0.36
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 30 0.47
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 30 0.47
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 30 0.47
gi|27544941 myosin IF [Homo sapiens] 30 0.47
>gi|239754100 PREDICTED: hypothetical protein XP_002345880 [Homo
sapiens]
Length = 125
Score = 258 bits (659), Expect = 8e-70
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MAVAGVPAVSFTSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPC 60
MAVAGVPAVSFTSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPC
Sbjct: 1 MAVAGVPAVSFTSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPC 60
Query: 61 SRSRQTLPGAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFCTPRLLASSPRHPGV 120
SRSRQTLPGAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFCTPRLLASSPRHPGV
Sbjct: 61 SRSRQTLPGAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFCTPRLLASSPRHPGV 120
Query: 121 PSDGR 125
PSDGR
Sbjct: 121 PSDGR 125
>gi|239748649 PREDICTED: hypothetical protein [Homo sapiens]
Length = 125
Score = 258 bits (659), Expect = 8e-70
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MAVAGVPAVSFTSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPC 60
MAVAGVPAVSFTSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPC
Sbjct: 1 MAVAGVPAVSFTSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPC 60
Query: 61 SRSRQTLPGAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFCTPRLLASSPRHPGV 120
SRSRQTLPGAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFCTPRLLASSPRHPGV
Sbjct: 61 SRSRQTLPGAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFCTPRLLASSPRHPGV 120
Query: 121 PSDGR 125
PSDGR
Sbjct: 121 PSDGR 125
>gi|239742674 PREDICTED: hypothetical protein XP_002342580 [Homo
sapiens]
Length = 125
Score = 254 bits (648), Expect = 2e-68
Identities = 124/125 (99%), Positives = 124/125 (99%)
Query: 1 MAVAGVPAVSFTSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPC 60
MAVAGVPAVSFTSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPC
Sbjct: 1 MAVAGVPAVSFTSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPC 60
Query: 61 SRSRQTLPGAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFCTPRLLASSPRHPGV 120
SRSRQTLPGAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAF TPRLLASSPRHPGV
Sbjct: 61 SRSRQTLPGAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFFTPRLLASSPRHPGV 120
Query: 121 PSDGR 125
PSDGR
Sbjct: 121 PSDGR 125
>gi|5729858 nuclear receptor coactivator 2 [Homo sapiens]
Length = 1464
Score = 33.9 bits (76), Expect = 0.033
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 17 PAPALSRSQTSRGPAQPSK-GGPGVLGSKSSLGRGPTGTLVGLPCSRSRQTLPGAEWRCE 75
P P + S QP G G++G++ +LG TG + S SR T+P EW +
Sbjct: 901 PFPPIRNSSPYSVIPQPGMMGNQGMIGNQGNLGNSSTGMIGN---SASRPTMPSGEWAPQ 957
Query: 76 AAEAR 80
++ R
Sbjct: 958 SSAVR 962
>gi|169214887 PREDICTED: similar to hCG2017976 [Homo sapiens]
Length = 271
Score = 33.9 bits (76), Expect = 0.033
Identities = 39/111 (35%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 21 LSRSQTSRGPAQPSKGGPGVLGS-KSSLGRGPTGTLVGLPCSRSRQ----TLPGAEWRCE 75
L + S G QP++G PGV K + G L+G PCS + LP R
Sbjct: 35 LLKEDPSSGSLQPAEGQPGVKSEWKGAKVGADIGYLIG-PCSSAADILPPILPAGTPRPG 93
Query: 76 AAEAREGLTRKSRLPVVPYATLWVRG-VEA---FCTPRLLASSPRHPGVPS 122
AA R R SR P+ A + RG EA P L A PR PG S
Sbjct: 94 AASCRPFCPRGSRGPMPYPAARFARGEAEARRRILPPVLPAGKPR-PGAVS 143
>gi|169215118 PREDICTED: hypothetical protein [Homo sapiens]
Length = 271
Score = 33.9 bits (76), Expect = 0.033
Identities = 39/111 (35%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 21 LSRSQTSRGPAQPSKGGPGVLGS-KSSLGRGPTGTLVGLPCSRSRQ----TLPGAEWRCE 75
L + S G QP++G PGV K + G L+G PCS + LP R
Sbjct: 35 LLKEDPSSGSLQPAEGQPGVKSEWKGAKVGADIGYLIG-PCSSAADILPPILPAGTPRPG 93
Query: 76 AAEAREGLTRKSRLPVVPYATLWVRG-VEA---FCTPRLLASSPRHPGVPS 122
AA R R SR P+ A + RG EA P L A PR PG S
Sbjct: 94 AASCRPFCPRGSRGPMPYPAARFARGEAEARRRILPPVLPAGKPR-PGAVS 143
>gi|169214613 PREDICTED: similar to hCG2017976 [Homo sapiens]
Length = 289
Score = 33.9 bits (76), Expect = 0.033
Identities = 39/111 (35%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 21 LSRSQTSRGPAQPSKGGPGVLGS-KSSLGRGPTGTLVGLPCSRSRQ----TLPGAEWRCE 75
L + S G QP++G PGV K + G L+G PCS + LP R
Sbjct: 53 LLKEDPSSGSLQPAEGQPGVKSEWKGAKVGADIGYLIG-PCSSAADILPPILPAGTPRPG 111
Query: 76 AAEAREGLTRKSRLPVVPYATLWVRG-VEA---FCTPRLLASSPRHPGVPS 122
AA R R SR P+ A + RG EA P L A PR PG S
Sbjct: 112 AASCRPFCPRGSRGPMPYPAARFARGEAEARRRILPPVLPAGKPR-PGAVS 161
>gi|197276600 microtubule-associated protein 4 isoform 4 [Homo
sapiens]
Length = 1135
Score = 33.9 bits (76), Expect = 0.033
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 14 PCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPCSRSRQTLPGAEWR 73
PC P+ S+TS G A+P +G P V G+ + + P LP S ++T P A +
Sbjct: 653 PCNSQPSELSSETS-GIARPEEGRPVVSGTGNDITTPPNKE---LPPSPEKKTKPLATTQ 708
Query: 74 CEAAEAREGLTRKSRLPVVPYATLWVRGVE----AFCTPRLLASSPRHPGVPS 122
+ T+ + LP P T + G+ + + + A+ P+ P V S
Sbjct: 709 PAKTSTSKAKTQPTSLPKQPAPTT-IGGLNKKPMSLASGLVPAAPPKRPAVAS 760
>gi|47519639 microtubule-associated protein 4 isoform 1 [Homo
sapiens]
Length = 1152
Score = 33.9 bits (76), Expect = 0.033
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 14 PCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPCSRSRQTLPGAEWR 73
PC P+ S+TS G A+P +G P V G+ + + P LP S ++T P A +
Sbjct: 653 PCNSQPSELSSETS-GIARPEEGRPVVSGTGNDITTPPNKE---LPPSPEKKTKPLATTQ 708
Query: 74 CEAAEAREGLTRKSRLPVVPYATLWVRGVE----AFCTPRLLASSPRHPGVPS 122
+ T+ + LP P T + G+ + + + A+ P+ P V S
Sbjct: 709 PAKTSTSKAKTQPTSLPKQPAPTT-IGGLNKKPMSLASGLVPAAPPKRPAVAS 760
>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
Length = 1270
Score = 32.7 bits (73), Expect = 0.073
Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 8/114 (7%)
Query: 12 TSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLG---RGPTGTLVGLPCSRSRQTLP 68
T+P +PAP T++GP + P K + + P T P + +T P
Sbjct: 658 TTPKKPAPKELAPTTTKGPTSTTSDKPAPTTPKETAPTTPKEPAPTTPKKPAPTTPETPP 717
Query: 69 GAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFCTPRLLASSPRHPGVPS 122
+E T K + + A TP+ L +SP+ PGVP+
Sbjct: 718 PT-----TSEVSTPTTTKEPTTIHKSPDESTPELSAEPTPKALENSPKEPGVPT 766
>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
Length = 1311
Score = 32.7 bits (73), Expect = 0.073
Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 8/114 (7%)
Query: 12 TSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLG---RGPTGTLVGLPCSRSRQTLP 68
T+P +PAP T++GP + P K + + P T P + +T P
Sbjct: 699 TTPKKPAPKELAPTTTKGPTSTTSDKPAPTTPKETAPTTPKEPAPTTPKKPAPTTPETPP 758
Query: 69 GAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFCTPRLLASSPRHPGVPS 122
+E T K + + A TP+ L +SP+ PGVP+
Sbjct: 759 PT-----TSEVSTPTTTKEPTTIHKSPDESTPELSAEPTPKALENSPKEPGVPT 807
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 32.7 bits (73), Expect = 0.073
Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 8/114 (7%)
Query: 12 TSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLG---RGPTGTLVGLPCSRSRQTLP 68
T+P +PAP T++GP + P K + + P T P + +T P
Sbjct: 751 TTPKKPAPKELAPTTTKGPTSTTSDKPAPTTPKETAPTTPKEPAPTTPKKPAPTTPETPP 810
Query: 69 GAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFCTPRLLASSPRHPGVPS 122
+E T K + + A TP+ L +SP+ PGVP+
Sbjct: 811 PT-----TSEVSTPTTTKEPTTIHKSPDESTPELSAEPTPKALENSPKEPGVPT 859
>gi|8923887 zinc finger protein 395 [Homo sapiens]
Length = 513
Score = 32.7 bits (73), Expect = 0.073
Identities = 31/109 (28%), Positives = 42/109 (38%), Gaps = 11/109 (10%)
Query: 2 AVAGVPAVSFTSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPCS 61
A AG P V T EPAP S + P P L S G G LP
Sbjct: 339 AAAGTP-VPGTPTSEPAPTPSMT------GLPLSALPPPLHKAQSSGPEHPGPESSLPSG 391
Query: 62 RSRQTLPGAEWRCEAAEAREGLTRKSRLPVVPY---ATLWVRGVEAFCT 107
++ PG+ W +A A + L ++PV P+ + W A C+
Sbjct: 392 ALSKSAPGSFWHIQADHAYQALP-SFQIPVSPHIYTSVSWAAAPSAACS 439
>gi|67190163 proteoglycan 4 isoform A [Homo sapiens]
Length = 1404
Score = 32.7 bits (73), Expect = 0.073
Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 8/114 (7%)
Query: 12 TSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLG---RGPTGTLVGLPCSRSRQTLP 68
T+P +PAP T++GP + P K + + P T P + +T P
Sbjct: 792 TTPKKPAPKELAPTTTKGPTSTTSDKPAPTTPKETAPTTPKEPAPTTPKKPAPTTPETPP 851
Query: 69 GAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFCTPRLLASSPRHPGVPS 122
+E T K + + A TP+ L +SP+ PGVP+
Sbjct: 852 PT-----TSEVSTPTTTKEPTTIHKSPDESTPELSAEPTPKALENSPKEPGVPT 900
>gi|114431216 tumor protein p53 inducible protein 13 [Homo sapiens]
Length = 393
Score = 32.7 bits (73), Expect = 0.073
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 26 TSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPCSRSRQTLPGAEWRCEAAEAREGLT- 84
TS+GP QPS G +++LG PT + + P + PG+ +A ++ G+
Sbjct: 190 TSQGPRQPSSSGAKRRRLRAALGPQPTRSALRFPSAS-----PGS---LKAKQSMAGIPG 241
Query: 85 RKSRLPVVPYATLWVRGVEAFCTPRLLASSPRHPGVP 121
R+S P VP +L + R A P G P
Sbjct: 242 RESNAPSVPTVSLLPGAPGGNASSRTEAQVPNGQGSP 278
>gi|18104952 T-box 1 isoform C [Homo sapiens]
Length = 495
Score = 32.3 bits (72), Expect = 0.095
Identities = 29/85 (34%), Positives = 34/85 (40%), Gaps = 14/85 (16%)
Query: 13 SPCEPAPALSRSQTSRGPAQPSKGGPGVLG-------------SKSSLGRGPTGTLVGLP 59
SP +P+ + +R Q GGP VLG S S G G G LV LP
Sbjct: 327 SPTQPSGTEKDAAEARREFQRDAGGPAVLGDPAHPPQLLARVLSPSLPGAGGAGGLVPLP 386
Query: 60 -CSRSRQTLPGAEWRCEAAEAREGL 83
R + P E R EA A E L
Sbjct: 387 GAPGGRPSPPNPELRLEAPGASEPL 411
>gi|28376656 zinc finger, X-linked, duplicated B [Homo sapiens]
Length = 803
Score = 32.3 bits (72), Expect = 0.095
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 7 PAVSFTSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPCSRSRQT 66
P + P EPAPA + + + GPA LG + LG GP L P ++ QT
Sbjct: 229 PDLLLAEPAEPAPAPAPEEEAEGPA-------AALGPRGPLGSGPGVVLYLCPEAQCGQT 281
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 32.0 bits (71), Expect = 0.12
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 10/116 (8%)
Query: 7 PAVSFTSPCEPA-PALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPCSRSRQ 65
PA +P P P+ + T R P P P L P+ LV P + Q
Sbjct: 480 PAALVMAPVAPKEPSTQVATTLRIPVSPPLPDP------EDLKNLPSSVLVKFPTQKDLQ 533
Query: 66 TLPGAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFCTPRLLASSPRHPGVP 121
T+P + + A+ GLT K V+P + +F + +SSP P P
Sbjct: 534 TVPASLEGAPFSPAQAGLTTKKDPTVLPLVQAAPKNSPSF---QSTSSSPEIPLSP 586
>gi|239746480 PREDICTED: hypothetical protein XP_002343771 [Homo
sapiens]
Length = 130
Score = 31.6 bits (70), Expect = 0.16
Identities = 29/90 (32%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
Query: 27 SRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPCSRSRQTLPGAEWRCEAAEAREGLTRK 86
S PA + P G S++ GP G P S S LPGA A+ARE L +
Sbjct: 35 SASPAAATTAAPSAWGLSSNIPSGPAGCAPRPPTSFS---LPGALPTTTCAKARENLQLR 91
Query: 87 SRLPVVPYATLWVRGVEAFCTPRLLASSPR 116
L + F P LLA PR
Sbjct: 92 DVLSSTVCLRFSPQKKSVF-PPELLAVPPR 120
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 31.2 bits (69), Expect = 0.21
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 13/54 (24%)
Query: 28 RGPAQPSKGGPGVLGSKSSLGR-------GPTGT-----LVGLPCSRSRQTLPG 69
RGPA P GGPG G G+ GP GT +VG+P R + +PG
Sbjct: 956 RGPAGPP-GGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPG 1008
Score = 27.7 bits (60), Expect = 2.3
Identities = 34/128 (26%), Positives = 45/128 (35%), Gaps = 18/128 (14%)
Query: 14 PCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGR-GPTGTL--------VGLPCSRSR 64
P EP +R T Q +G G LG+ GR GP G++ +GLP +
Sbjct: 563 PGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGS 622
Query: 65 QTLPGAEWRC--------EAAEAREGLTRKSRLPVVPYATLWVRGVEAFCTPRLLASSPR 116
PG A ++G S PV P RG + P P
Sbjct: 623 SGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSG-PVGPPGLAGERGEQGPPGPTGFQGLPG 681
Query: 117 HPGVPSDG 124
PG P +G
Sbjct: 682 PPGPPGEG 689
>gi|239755362 PREDICTED: hypothetical protein [Homo sapiens]
Length = 112
Score = 31.2 bits (69), Expect = 0.21
Identities = 37/118 (31%), Positives = 47/118 (39%), Gaps = 22/118 (18%)
Query: 17 PAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTL-------VGLPCSRSRQTLPG 69
P+PAL S A GPGVL +++L R T G+ C RS G
Sbjct: 6 PSPALHASTPQLFSAFGRLMGPGVLEQRAALVRDSTAVQEPRRRGGSGMACCRSPALPHG 65
Query: 70 AEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFCTPRLLAS--SPRHPGVPSDGR 125
E AEAR+ R+ P V + P+LLA SP PG S G+
Sbjct: 66 -----EVAEARQKFQREVSGPAVV--------GDPAPPPQLLAQVLSPSLPGASSAGQ 110
>gi|31543148 hypothetical protein LOC79173 [Homo sapiens]
Length = 637
Score = 31.2 bits (69), Expect = 0.21
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 5 GVPAVSFTSPCE-PAPALSRSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPCS 61
GVP ++P PAP L + P ++G P + S +GR GT L CS
Sbjct: 275 GVPCTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCS 332
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 30.8 bits (68), Expect = 0.28
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 27 SRGPAQP-----SKGGPGVLGSKSSLGRGPTGTLVGLPCSRSRQTLPGAE 71
SRGP+ P +KG PGV+G+ + GP+G GLP R +PG +
Sbjct: 608 SRGPSGPPGPDGNKGEPGVVGAVGT--AGPSGP-SGLPGERGAAGIPGGK 654
Score = 26.6 bits (57), Expect = 5.2
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 15/49 (30%)
Query: 36 GGPGVLGSKSSLGR----GPTGT-----------LVGLPCSRSRQTLPG 69
G PG G K G GP GT ++GLP SR + LPG
Sbjct: 838 GPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPG 886
>gi|169217788 PREDICTED: similar to putative DUX4 protein [Homo
sapiens]
Length = 422
Score = 30.4 bits (67), Expect = 0.36
Identities = 32/134 (23%), Positives = 46/134 (34%), Gaps = 28/134 (20%)
Query: 11 FTSPCEPAPALSRSQTSRGPAQPSKG------------GPGVLGSKSSLGRGPTGT-LVG 57
+ +P P ALS Q R PA P K GP +G P G ++
Sbjct: 241 YATPTPPEGALSHPQAPRWPAHPGKSREDRELQLDGLPGPCTVGQPGPAQARPQGQGVLA 300
Query: 58 LPCSRSR--------QTLPGAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFCTPR 109
+P S+ + A W +A A R P P A+ W ++ P
Sbjct: 301 IPASQGSPWWGWGQGPQVARAAWEPQAGAA------PPRQPAPPEASAWQGQMQGIPVPT 354
Query: 110 LLASSP-RHPGVPS 122
+ P R +PS
Sbjct: 355 EVLQEPGRSSALPS 368
>gi|89062404 PREDICTED: similar to putative DUX4 protein [Homo
sapiens]
Length = 422
Score = 30.4 bits (67), Expect = 0.36
Identities = 32/134 (23%), Positives = 46/134 (34%), Gaps = 28/134 (20%)
Query: 11 FTSPCEPAPALSRSQTSRGPAQPSKG------------GPGVLGSKSSLGRGPTGT-LVG 57
+ +P P ALS Q R PA P K GP +G P G ++
Sbjct: 241 YATPTPPEGALSHPQAPRWPAHPGKSREDRELQLDGLPGPCTVGQPGPAQARPQGQGVLA 300
Query: 58 LPCSRSR--------QTLPGAEWRCEAAEAREGLTRKSRLPVVPYATLWVRGVEAFCTPR 109
+P S+ + A W +A A R P P A+ W ++ P
Sbjct: 301 IPASQGSPWWGWGRGPQVARAAWEPQAGAA------PPRQPAPPEASAWQGQMQGIPVPT 354
Query: 110 LLASSP-RHPGVPS 122
+ P R +PS
Sbjct: 355 EVLQEPGRSSALPS 368
>gi|199559779 coiled-coil domain containing 8 [Homo sapiens]
Length = 538
Score = 30.4 bits (67), Expect = 0.36
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 18/93 (19%)
Query: 16 EPAPALSRSQTSRGPAQPSK----------GGPGVLGSKSSLGRGPTGTLVGLPCSRSRQ 65
E APA+ + R A+ + G PG+ ++ S +G TGT G + +
Sbjct: 417 ERAPAVQGADNQRAQARAGQRAEAAHNQRAGAPGIQEAEVSAAQGTTGTAPGARARKQVK 476
Query: 66 TL----PGA-EWRCEAAEAREGLTRKSRLPVVP 93
T+ PG W C + R RLP +P
Sbjct: 477 TVRFQTPGRFSWFC---KRRRAFWHTPRLPTLP 506
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 30.0 bits (66), Expect = 0.47
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 19 PALSRSQTSRGPAQPSKGGPGVLGSKSSLG----RGPTGT-----LVGLPCSRSRQTLPG 69
PA S R + +KG PG +G+ G GP G L GLP S +Q PG
Sbjct: 1236 PAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPG 1295
Query: 70 A 70
A
Sbjct: 1296 A 1296
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 30.0 bits (66), Expect = 0.47
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 19 PALSRSQTSRGPAQPSKGGPGVLGSKSSLG----RGPTGT-----LVGLPCSRSRQTLPG 69
PA S R + +KG PG +G+ G GP G L GLP S +Q PG
Sbjct: 1215 PAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPG 1274
Query: 70 A 70
A
Sbjct: 1275 A 1275
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 30.0 bits (66), Expect = 0.47
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 19 PALSRSQTSRGPAQPSKGGPGVLGSKSSLG----RGPTGT-----LVGLPCSRSRQTLPG 69
PA S R + +KG PG +G+ G GP G L GLP S +Q PG
Sbjct: 1322 PAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPG 1381
Query: 70 A 70
A
Sbjct: 1382 A 1382
>gi|27544941 myosin IF [Homo sapiens]
Length = 1098
Score = 30.0 bits (66), Expect = 0.47
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 5 GVPAVSFTSPCEPAPALSRSQTSRGPAQPSKGGPGVLGSKSSLG-----RGPTGTLVGLP 59
G P S +P APA R G ++GGP L S G RGP T +G
Sbjct: 933 GKPRRSSQAPTRAAPAPPRGMDRNGVPPSARGGPLPLEIMSGGGTHRPPRGPPSTSLG-- 990
Query: 60 CSRSRQTLPGAEWRCE 75
SR + P +E E
Sbjct: 991 ASRRPRARPPSEHNTE 1006
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,275,420
Number of Sequences: 37866
Number of extensions: 325074
Number of successful extensions: 1758
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 184
Number of HSP's that attempted gapping in prelim test: 1472
Number of HSP's gapped (non-prelim): 463
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.