Guide to the Human Genome
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Name: LOC652119 Sequence: fasta or formatted (422aa) NCBI GI: 169217788
Description:

PREDICTED: similar to putative DUX4 protein

Referenced in:

Homeobox and Related Proteins

Other entries for this name:
alt prot [422aa] PREDICTED: similar to putative DUX4 protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         51           2
 C cysteine            1.4          6           1
 D aspartate           1.4          6           1
 E glutamate           8.8         37           3
 F phenylalanine       2.4         10           1
 G glycine            10.7         45           2
 H histidine           1.4          6           1
 I isoleucine          2.4         10           1
 K lysine              0.9          4           1
 L leucine             9.2         39           3
 M methionine          1.2          5           1
 N asparagine          0.9          4           1
 P proline            12.8         54           2
 Q glutamine           8.3         35           2
 R arginine            7.1         30           3
 S serine              6.4         27           2
 T threonine           4.3         18           2
 V valine              3.6         15           2
 W tryptophan          3.3         14           2
 Y tyrosine            1.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to putative DUX4 protein 
LOC652119             0.998   PREDICTED: similar to putative DUX4 protein 
LOC100289581          0.790   PREDICTED: hypothetical protein XP_002343082 
LOC440017             0.788   PREDICTED: similar to double homeobox, 4 
LOC728022             0.788   PREDICTED: similar to double homeobox, 4 
LOC399839             0.788   PREDICTED: similar to double homeobox, 4 
LOC440013             0.788   PREDICTED: similar to double homeobox, 4 
LOC440014             0.785   PREDICTED: similar to double homeobox, 4 
LOC441056             0.785   PREDICTED: double homeobox, 4-like 
LOC653548             0.782   PREDICTED: double homeobox, 4-like 
DUX4                  0.782   double homeobox, 4 
LOC728410             0.782   double homeobox, 4-like 
LOC653543             0.782   double homeobox, 4-like 
LOC653545             0.782   double homeobox, 4-like 
LOC653544             0.782   double homeobox, 4-like 
HPX-2                 0.691   PREDICTED: similar to double homeobox, 4 
HPX-2                 0.688   PREDICTED: similar to double homeobox, 4 
LOC100290397          0.541   PREDICTED: hypothetical protein XP_002348309, parti...
LOC100288801          0.408   PREDICTED: hypothetical protein XP_002342402 
LOC652586             0.321   PREDICTED: similar to facioscapulohumeral muscular ...
LOC100134409          0.316   PREDICTED: similar to facioscapulohumeral muscular ...
LOC100290743          0.303   PREDICTED: hypothetical protein XP_002346688 
DUX5                  0.246   double homeobox, 5 
DUX1                  0.246   double homeobox, 1 
DUX3                  0.243   double homeobox, 3 
LOC100292644          0.153   PREDICTED: similar to facioscapulohumeral muscular ...
DUXA                  0.084   double homeobox A 
LOC100291517          0.081   PREDICTED: hypothetical protein XP_002347726 
LOC100289629          0.081   PREDICTED: hypothetical protein XP_002344158 
PAX7                  0.047   paired box 7 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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