Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ZXDB Sequence: fasta or formatted (803aa) NCBI GI: 28376656
Description:

zinc finger, X-linked, duplicated B

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         72           3
 C cysteine            3.2         26           2
 D aspartate           4.5         36           3
 E glutamate           5.4         43           3
 F phenylalanine       4.5         36           2
 G glycine            10.3         83           7
 H histidine           3.9         31           1
 I isoleucine          1.7         14           1
 K lysine              4.5         36           2
 L leucine             9.8         79           4
 M methionine          1.1          9           1
 N asparagine          2.6         21           4
 P proline             9.1         73           3
 Q glutamine           4.4         35           2
 R arginine            4.4         35           3
 S serine              9.6         77           3
 T threonine           6.2         50           2
 V valine              4.5         36           2
 W tryptophan          0.6          5           1
 Y tyrosine            0.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger, X-linked, duplicated B 
ZXDA                  0.952   zinc finger, X-linked, duplicated A 
ZXDC                  0.485   ZXD family zinc finger C isoform 2 
ZXDC                  0.484   ZXD family zinc finger C isoform 1 
ZNF41                 0.091   zinc finger protein 41 
ZNF41                 0.091   zinc finger protein 41 
ZNF782                0.090   zinc finger protein 782 
ZNF629                0.090   zinc finger protein 629 
ZNF180                0.089   zinc finger protein 180 
ZNF585B               0.089   zinc finger protein 585B 
ZNF45                 0.089   zinc finger protein 45 
ZNF182                0.089   zinc finger protein 21 isoform 2 
ZNF182                0.089   zinc finger protein 21 isoform 1 
ZNF585A               0.088   zinc finger protein 585A 
ZNF585A               0.088   zinc finger protein 585A 
ZNF235                0.088   zinc finger protein 93 homolog 
ZNF615                0.087   zinc finger protein 615 
ZNF436                0.087   zinc finger protein 436 
ZNF436                0.087   zinc finger protein 436 
LOC100287429          0.086   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.086   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.086   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.086   zinc finger protein 84 
ZNF84                 0.086   zinc finger protein 84 
ZNF484                0.086   zinc finger protein 484 isoform b 
ZNF484                0.086   zinc finger protein 484 isoform a 
ZNF234                0.086   zinc finger protein 234 
ZNF234                0.086   zinc finger protein 234 
ZSCAN2                0.086   zinc finger protein 29 isoform 1 
ZNF544                0.086   zinc finger protein 544 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press