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Search of human proteins with 239748036
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748036 PREDICTED: hypothetical protein XP_002346497 [Homo
sapiens]
(123 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748036 PREDICTED: hypothetical protein XP_002346497 [Homo ... 272 5e-74
gi|239741928 PREDICTED: hypothetical protein XP_002342354 [Homo ... 216 5e-57
gi|239741930 PREDICTED: hypothetical protein XP_002342355 [Homo ... 176 5e-45
gi|239753468 PREDICTED: hypothetical protein [Homo sapiens] 172 4e-44
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 33 0.042
gi|21704287 sialidase 4 [Homo sapiens] 32 0.12
gi|189181750 human immunodeficiency virus type I enhancer bindin... 32 0.12
gi|116089331 human immunodeficiency virus type I enhancer bindin... 32 0.12
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 32 0.12
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 31 0.21
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 31 0.21
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 31 0.21
gi|157743252 pecanex-like 3 [Homo sapiens] 31 0.27
gi|148612825 Rap GTPase interactor [Homo sapiens] 30 0.35
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 30 0.35
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 30 0.35
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 30 0.46
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 30 0.46
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 30 0.46
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 30 0.46
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 30 0.46
gi|24308227 zinc finger protein 687 [Homo sapiens] 30 0.46
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 30 0.60
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 29 0.79
gi|19718796 RAD17 homolog isoform 1 [Homo sapiens] 29 0.79
gi|19718794 RAD17 homolog isoform 1 [Homo sapiens] 29 0.79
gi|19718792 RAD17 homolog isoform 1 [Homo sapiens] 29 0.79
gi|19718790 RAD17 homolog isoform 4 [Homo sapiens] 29 0.79
gi|19718788 RAD17 homolog isoform 3 [Homo sapiens] 29 0.79
gi|19718784 RAD17 homolog isoform 1 [Homo sapiens] 29 0.79
>gi|239748036 PREDICTED: hypothetical protein XP_002346497 [Homo
sapiens]
Length = 123
Score = 272 bits (695), Expect = 5e-74
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 1 MGKNGVPGRGGGHLPKAFCSWGYCQVLEQGLGPATTKPLGPHMLRTESGKLESHNPQEWT 60
MGKNGVPGRGGGHLPKAFCSWGYCQVLEQGLGPATTKPLGPHMLRTESGKLESHNPQEWT
Sbjct: 1 MGKNGVPGRGGGHLPKAFCSWGYCQVLEQGLGPATTKPLGPHMLRTESGKLESHNPQEWT 60
Query: 61 LPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPLRKGREDQR 120
LPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPLRKGREDQR
Sbjct: 61 LPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPLRKGREDQR 120
Query: 121 TRG 123
TRG
Sbjct: 121 TRG 123
>gi|239741928 PREDICTED: hypothetical protein XP_002342354 [Homo
sapiens]
Length = 130
Score = 216 bits (549), Expect = 5e-57
Identities = 99/103 (96%), Positives = 100/103 (97%)
Query: 21 WGYCQVLEQGLGPATTKPLGPHMLRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAG 80
W +VLEQGLGPATTKPLGPHMLRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAG
Sbjct: 28 WVLSKVLEQGLGPATTKPLGPHMLRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAG 87
Query: 81 EVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPLRKGREDQRTRG 123
EVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPLRKGREDQRTRG
Sbjct: 88 EVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPLRKGREDQRTRG 130
>gi|239741930 PREDICTED: hypothetical protein XP_002342355 [Homo
sapiens]
Length = 86
Score = 176 bits (445), Expect = 5e-45
Identities = 80/80 (100%), Positives = 80/80 (100%)
Query: 44 LRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTG 103
LRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTG
Sbjct: 7 LRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTG 66
Query: 104 NPQEWTLPLRKGREDQRTRG 123
NPQEWTLPLRKGREDQRTRG
Sbjct: 67 NPQEWTLPLRKGREDQRTRG 86
>gi|239753468 PREDICTED: hypothetical protein [Homo sapiens]
Length = 86
Score = 172 bits (437), Expect = 4e-44
Identities = 79/80 (98%), Positives = 79/80 (98%)
Query: 44 LRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTG 103
LRTESGKLES NPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTG
Sbjct: 7 LRTESGKLESQNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTG 66
Query: 104 NPQEWTLPLRKGREDQRTRG 123
NPQEWTLPLRKGREDQRTRG
Sbjct: 67 NPQEWTLPLRKGREDQRTRG 86
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 33.5 bits (75), Expect = 0.042
Identities = 36/113 (31%), Positives = 42/113 (37%), Gaps = 23/113 (20%)
Query: 2 GKNGVPGRGGGH-LPKAFCSWGYCQVLEQGLGPATTKPLGPHMLRTESGKLESHNPQEWT 60
GK+G PG G + LP A G P P GP+ + E G
Sbjct: 465 GKDGSPGEPGANGLPGAAGERG---------APGFRGPAGPNGIPGEKGPAGERGAPG-- 513
Query: 61 LPLGKGGEDREPTRVDPPAGE-------VQGGPGTH-KSGPSLWGSSGRTGNP 105
P G G EP R P G GGPG+ K GP GS G +G P
Sbjct: 514 -PAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPP--GSQGESGRP 563
Score = 25.8 bits (55), Expect = 8.7
Identities = 17/52 (32%), Positives = 17/52 (32%)
Query: 64 GKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPLRKG 115
G G P PP Q GP P G SG G E P R G
Sbjct: 189 GHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPG 240
>gi|21704287 sialidase 4 [Homo sapiens]
Length = 496
Score = 32.0 bits (71), Expect = 0.12
Identities = 38/122 (31%), Positives = 51/122 (41%), Gaps = 25/122 (20%)
Query: 2 GKNGVPGRGGGHLPKAFCSWGYCQVLEQGL-GPATTKPLGPHMLRTESGKLESHNPQEWT 60
G + +P LP+ +WG CQ G PA +P R +S + +P +
Sbjct: 269 GTSFLPAERVASLPET--AWG-CQGSIVGFPAPAPNRP------RDDSWSVGPGSPLQPP 319
Query: 61 LPLGKG-GEDREPTRVDPPAGEVQGGP---------GTHKSGPSLWGSSGRTGNPQEWTL 110
L LG G E E VDP G+V GGP G + GP G +G+ WTL
Sbjct: 320 L-LGPGVHEPPEEAAVDPRGGQVPGGPFSRLQPRGDGPRQPGP----RPGVSGDVGSWTL 374
Query: 111 PL 112
L
Sbjct: 375 AL 376
>gi|189181750 human immunodeficiency virus type I enhancer binding
protein 3 b [Homo sapiens]
Length = 2405
Score = 32.0 bits (71), Expect = 0.12
Identities = 27/92 (29%), Positives = 33/92 (35%), Gaps = 14/92 (15%)
Query: 7 PGRGGGHLPKAFCSWGYCQVLEQGLGPATTKPLG------PHMLRTESGKLESHNPQEWT 60
PGRG G LP C L P T PLG H+L G + P+
Sbjct: 2017 PGRGMGALP--------CGSPRLQLSPLTLCPLGRELAPRAHVLSKLEGTTDPGLPRYSP 2068
Query: 61 LPLGKGGEDREPTRVDPPAGEVQGGPGTHKSG 92
G+ P R PP GPG+ +G
Sbjct: 2069 TRRWSPGQAESPPRSAPPGKWALAGPGSPSAG 2100
>gi|116089331 human immunodeficiency virus type I enhancer binding
protein 3 [Homo sapiens]
Length = 2406
Score = 32.0 bits (71), Expect = 0.12
Identities = 27/92 (29%), Positives = 33/92 (35%), Gaps = 14/92 (15%)
Query: 7 PGRGGGHLPKAFCSWGYCQVLEQGLGPATTKPLG------PHMLRTESGKLESHNPQEWT 60
PGRG G LP C L P T PLG H+L G + P+
Sbjct: 2017 PGRGMGALP--------CGSPRLQLSPLTLCPLGRELAPRAHVLSKLEGTTDPGLPRYSP 2068
Query: 61 LPLGKGGEDREPTRVDPPAGEVQGGPGTHKSG 92
G+ P R PP GPG+ +G
Sbjct: 2069 TRRWSPGQAESPPRSAPPGKWALAGPGSPSAG 2100
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 32.0 bits (71), Expect = 0.12
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 51 LESHNPQEWTLP--LGKGGEDREPTRVDPPAG-EVQGGPGTHKSGPS----LWGSSGRTG 103
+E N ++ T+ + +GGED E TR P G E + GT S PS G G
Sbjct: 23 IEEVNDEKLTVTSLMARGGEDEENTRSKPEYGTEAENNVGTEGSVPSDDQDREGGGGHEP 82
Query: 104 NPQEWTLPLRKGREDQ 119
Q+ PL K + Q
Sbjct: 83 EQQQEEPPLTKPEQQQ 98
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 31.2 bits (69), Expect = 0.21
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 62 PLGKGGEDREPTRVDPPAGEV-------QGGPGTHKSGPSLWGSSGRTGNPQEWT 109
P GK G+D +P PAGE + GP P L G G +G+P WT
Sbjct: 1389 PRGKPGKDGKPG-TPGPAGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSGSPATWT 1442
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 31.2 bits (69), Expect = 0.21
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 62 PLGKGGEDREPTRVDPPAGEV-------QGGPGTHKSGPSLWGSSGRTGNPQEWT 109
P GK G+D +P PAGE + GP P L G G +G+P WT
Sbjct: 1389 PRGKPGKDGKPG-TPGPAGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSGSPATWT 1442
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 31.2 bits (69), Expect = 0.21
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 62 PLGKGGEDREPTRVDPPAGEV-------QGGPGTHKSGPSLWGSSGRTGNPQEWT 109
P GK G+D +P PAGE + GP P L G G +G+P WT
Sbjct: 1389 PRGKPGKDGKPG-TPGPAGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSGSPATWT 1442
>gi|157743252 pecanex-like 3 [Homo sapiens]
Length = 2034
Score = 30.8 bits (68), Expect = 0.27
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 12/53 (22%)
Query: 32 GPATTKPLGPHMLRTE--SGKLESHNPQEWTL--PLGKGGEDREPTRVDPPAG 80
GP T++P GP +L +E SGK W+L G GG D EP P G
Sbjct: 1915 GPRTSRPPGPGLLSSEGPSGK--------WSLGGRKGLGGSDGEPASGSPKGG 1959
>gi|148612825 Rap GTPase interactor [Homo sapiens]
Length = 1075
Score = 30.4 bits (67), Expect = 0.35
Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 5 GVPGRGGGHLPKAFCSWGYCQVLEQGLGPATTKPLGPHMLRTESGKLESHNPQEWTLPLG 64
G PGR G + C G V+ G A + PL P + G E TLPL
Sbjct: 817 GSPGRPGSGASQPVCPEGMHHVVLDGHLEAPSCPLAPR----DPGPAAREVAPERTLPLR 872
Query: 65 KGGEDREPTRVDPPAGEVQGGP 86
+ P P G Q GP
Sbjct: 873 GAPWAQAPPGRQPSRGGSQAGP 894
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 30.4 bits (67), Expect = 0.35
Identities = 20/69 (28%), Positives = 28/69 (40%)
Query: 47 ESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQ 106
E G+ PQ P G G P R PP + + GPG P + G G +G
Sbjct: 344 EDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAG 403
Query: 107 EWTLPLRKG 115
+ +P +G
Sbjct: 404 KPGVPGERG 412
>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
preproprotein [Homo sapiens]
Length = 178
Score = 30.4 bits (67), Expect = 0.35
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 14/76 (18%)
Query: 29 QGLGPATTKPLGP--------HMLRTESGKLESHNPQEWTLPLGK----GGEDREPTRVD 76
QG P KP GP R+ GK + QE P G GG ++P
Sbjct: 98 QGPPPQGGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQA-- 155
Query: 77 PPAGEVQGGPGTHKSG 92
PPAG+ QG P + G
Sbjct: 156 PPAGQPQGPPRPPQGG 171
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 30.0 bits (66), Expect = 0.46
Identities = 24/78 (30%), Positives = 28/78 (35%), Gaps = 9/78 (11%)
Query: 30 GLGPATTKPLGPHMLRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTH 89
GL P + P+GP G Q P G GE +P + P GP
Sbjct: 209 GLMPGSVGPVGPR------GPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGP--- 259
Query: 90 KSGPSLWGSSGRTGNPQE 107
P G GR GNP E
Sbjct: 260 PGKPGEDGEPGRNGNPGE 277
Score = 27.3 bits (59), Expect = 3.0
Identities = 34/130 (26%), Positives = 41/130 (31%), Gaps = 36/130 (27%)
Query: 2 GKNGVPGRGGGHLPKAFCSWGYCQVLEQGLGPATTKPLGPHMLRTESGKLESHNPQEWTL 61
G NGVPG GG T P G +G++ P
Sbjct: 888 GPNGVPGLKGGR--------------------GTQGPPGATGFPGSAGRVGPPGPAGAPG 927
Query: 62 PLGKGGEDREPTRVDPPAGEVQGGPGTH-----------KSGPSLWGSSGRTGNPQEWTL 110
P G G EP + PP ++G PG+H GP G G G P
Sbjct: 928 PAGPLG---EPGKEGPPG--LRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGP 982
Query: 111 PLRKGREDQR 120
P G QR
Sbjct: 983 PGPAGTTGQR 992
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 30.0 bits (66), Expect = 0.46
Identities = 32/111 (28%), Positives = 39/111 (35%), Gaps = 9/111 (8%)
Query: 2 GKNGVPGRGGGHLPKAFCSWGYCQVLEQGLGPATTK-------PLGPHMLRTESGKLESH 54
G+ G PG G P + LG A K P G L +G+ +
Sbjct: 1459 GQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAK 1518
Query: 55 NPQEWTLPLGKGGEDREPTRVDPPA--GEVQGGPGTHKSGPSLWGSSGRTG 103
P+ P G+ GE EP R PA G GP K G G TG
Sbjct: 1519 GPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATG 1569
Score = 26.2 bits (56), Expect = 6.7
Identities = 30/113 (26%), Positives = 41/113 (36%), Gaps = 22/113 (19%)
Query: 2 GKNGVPGRGGGHLPKAFCSWGYCQVLEQGL--GPATTKPLGPHMLRTESGKLESHNPQEW 59
G G+PG+ G E+GL P P+G + + G+ +
Sbjct: 1646 GDPGLPGKAG----------------ERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGS 1689
Query: 60 TLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSG-PSLWGSSGRTGNPQEWTLP 111
+ P G GE P PP V GPG + G P G G G + LP
Sbjct: 1690 SGPKGDRGEPGPP---GPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLP 1739
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 30.0 bits (66), Expect = 0.46
Identities = 17/51 (33%), Positives = 20/51 (39%)
Query: 62 PLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 112
P+G GG P P + GPG K + G G G P E PL
Sbjct: 1368 PIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPL 1418
Score = 28.1 bits (61), Expect = 1.8
Identities = 20/66 (30%), Positives = 24/66 (36%)
Query: 40 GPHMLRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSS 99
GP + E+G + P P G G + PP G GP K P GS
Sbjct: 1076 GPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSP 1135
Query: 100 GRTGNP 105
G G P
Sbjct: 1136 GIQGEP 1141
Score = 26.9 bits (58), Expect = 3.9
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 62 PLGKGGEDREPTRVDPPAGEVQGGPGTHKSG-----PSLWGSSGRTGNPQEWTLPLRKG 115
P G GE EP ++P V+G PG P + G+ G G+P E P R G
Sbjct: 292 PRGLKGEKGEPAVLEPGM-LVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAG 349
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 30.0 bits (66), Expect = 0.46
Identities = 17/51 (33%), Positives = 20/51 (39%)
Query: 62 PLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 112
P+G GG P P + GPG K + G G G P E PL
Sbjct: 1347 PIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPL 1397
Score = 28.1 bits (61), Expect = 1.8
Identities = 20/66 (30%), Positives = 24/66 (36%)
Query: 40 GPHMLRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSS 99
GP + E+G + P P G G + PP G GP K P GS
Sbjct: 1055 GPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSP 1114
Query: 100 GRTGNP 105
G G P
Sbjct: 1115 GIQGEP 1120
Score = 26.9 bits (58), Expect = 3.9
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 62 PLGKGGEDREPTRVDPPAGEVQGGPGTHKSG-----PSLWGSSGRTGNPQEWTLPLRKG 115
P G GE EP ++P V+G PG P + G+ G G+P E P R G
Sbjct: 271 PRGLKGEKGEPAVLEPGM-LVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAG 328
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 30.0 bits (66), Expect = 0.46
Identities = 17/51 (33%), Positives = 20/51 (39%)
Query: 62 PLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 112
P+G GG P P + GPG K + G G G P E PL
Sbjct: 1454 PIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPL 1504
Score = 28.1 bits (61), Expect = 1.8
Identities = 20/66 (30%), Positives = 24/66 (36%)
Query: 40 GPHMLRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSS 99
GP + E+G + P P G G + PP G GP K P GS
Sbjct: 1162 GPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSP 1221
Query: 100 GRTGNP 105
G G P
Sbjct: 1222 GIQGEP 1227
Score = 26.9 bits (58), Expect = 3.9
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 62 PLGKGGEDREPTRVDPPAGEVQGGPGTHKSG-----PSLWGSSGRTGNPQEWTLPLRKG 115
P G GE EP ++P V+G PG P + G+ G G+P E P R G
Sbjct: 378 PRGLKGEKGEPAVLEPGM-LVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAG 435
>gi|24308227 zinc finger protein 687 [Homo sapiens]
Length = 1237
Score = 30.0 bits (66), Expect = 0.46
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 71 EPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRT 102
EP PPA +GGPG+ GP + SS T
Sbjct: 1089 EPDSTTPPAKSPRGGPGSGGHGPLRYRSSSST 1120
Score = 28.1 bits (61), Expect = 1.8
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 22 GYCQVLEQGLGPATTKPLGPHMLRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGE 81
G Q L+ GL A+ L H R S K + L LG G E+ P+R DP G+
Sbjct: 1133 GAQQCLDCGLCFASPGSLSRH--RFISHKKRRGVGKASALGLGDGEEEAPPSRSDPDGGD 1190
Query: 82 ----VQGGPGTHK 90
GGP T K
Sbjct: 1191 SPLPASGGPLTCK 1203
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 29.6 bits (65), Expect = 0.60
Identities = 33/122 (27%), Positives = 44/122 (36%), Gaps = 10/122 (8%)
Query: 2 GKNGVPGRGGGHLPKAFCSWGYCQVLEQGLGPATTKPLGPHMLRTESGKLESHNPQEWTL 61
G G PG G P+ + E GP +GP + + G P
Sbjct: 343 GTKGGPGDQGEPGPQGLPGFSGPPGKEGEPGPRGE--IGPQGIMGQKGDQGERGPVGQPG 400
Query: 62 PLGKGGEDRE--PTRVDPPAGEVQGGPGTH--KSGPSLWGSSGRTGNPQEWTLPLRKGRE 117
P G+ G E P + P QG PG K P G G+ G+P LP KG +
Sbjct: 401 PQGRQGPKGEQGPPGIPGP----QGLPGVKGDKGSPGKTGPRGKVGDPGVAGLPGEKGEK 456
Query: 118 DQ 119
+
Sbjct: 457 GE 458
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 29.3 bits (64), Expect = 0.79
Identities = 32/122 (26%), Positives = 41/122 (33%), Gaps = 21/122 (17%)
Query: 2 GKNGVPGRGGGHLPKAFCSWGYCQVLEQGLG-PATTKPLGPHMLRT-------------- 46
G G PG GG P+ S+GY + G+ P P GP L
Sbjct: 148 GPPGPPGLGGNFAPQL--SYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPP 205
Query: 47 ----ESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRT 102
E G P+ P GK G+D E + P GP + P G G
Sbjct: 206 GEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMK 265
Query: 103 GN 104
G+
Sbjct: 266 GH 267
Score = 28.5 bits (62), Expect = 1.3
Identities = 15/44 (34%), Positives = 18/44 (40%)
Query: 62 PLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNP 105
P G GE P + PP G + P GS GR G+P
Sbjct: 987 PSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSP 1030
Score = 27.3 bits (59), Expect = 3.0
Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 9/73 (12%)
Query: 33 PATTKPLGPHMLRTESGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSG 92
P + GP +GK P+ T P G+ GE V PP GP K
Sbjct: 886 PGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGE------VGPPG---PPGPAGEKGS 936
Query: 93 PSLWGSSGRTGNP 105
P G +G G P
Sbjct: 937 PGADGPAGAPGTP 949
Score = 26.2 bits (56), Expect = 6.7
Identities = 37/107 (34%), Positives = 40/107 (37%), Gaps = 19/107 (17%)
Query: 2 GKNGVPGRGGGHLPKAFCSWGYCQVLEQGLGPATTKPLGPHMLRTESGKLESHNPQEWTL 61
G+ GVPG G P Q GP P GP R E G S Q
Sbjct: 596 GERGVPGPPGAVGPAGKDGEAGAQ------GPPG--PAGPAGERGEQGPAGSPGFQGLPG 647
Query: 62 PLGKGGEDREPTRVDPPAGEVQGGPG-THKSGPSLWGSSGRTGNPQE 107
P G GE +P GE QG PG GPS G+ G G P E
Sbjct: 648 PAGPPGEAGKP-------GE-QGVPGDLGAPGPS--GARGERGFPGE 684
Score = 25.8 bits (55), Expect = 8.7
Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 48 SGKLESHNPQEWTLPLGKGGEDREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQE 107
+G S P T P G G+D P PP Q G P G++G G E
Sbjct: 541 TGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGV---MGFPGPKGAAGEPGKAGE 597
Query: 108 WTLP 111
+P
Sbjct: 598 RGVP 601
>gi|19718796 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 29.3 bits (64), Expect = 0.79
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 69 DREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 112
DRE +DP +G+ G H + SL G + P+ W+LPL
Sbjct: 592 DREHGMIDPDSGDEAQLNGGHSAEESL-GEPTQATVPETWSLPL 634
>gi|19718794 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 29.3 bits (64), Expect = 0.79
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 69 DREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 112
DRE +DP +G+ G H + SL G + P+ W+LPL
Sbjct: 592 DREHGMIDPDSGDEAQLNGGHSAEESL-GEPTQATVPETWSLPL 634
>gi|19718792 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 29.3 bits (64), Expect = 0.79
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 69 DREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 112
DRE +DP +G+ G H + SL G + P+ W+LPL
Sbjct: 592 DREHGMIDPDSGDEAQLNGGHSAEESL-GEPTQATVPETWSLPL 634
>gi|19718790 RAD17 homolog isoform 4 [Homo sapiens]
Length = 584
Score = 29.3 bits (64), Expect = 0.79
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 69 DREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 112
DRE +DP +G+ G H + SL G + P+ W+LPL
Sbjct: 506 DREHGMIDPDSGDEAQLNGGHSAEESL-GEPTQATVPETWSLPL 548
>gi|19718788 RAD17 homolog isoform 3 [Homo sapiens]
Length = 505
Score = 29.3 bits (64), Expect = 0.79
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 69 DREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 112
DRE +DP +G+ G H + SL G + P+ W+LPL
Sbjct: 427 DREHGMIDPDSGDEAQLNGGHSAEESL-GEPTQATVPETWSLPL 469
>gi|19718784 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 29.3 bits (64), Expect = 0.79
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 69 DREPTRVDPPAGEVQGGPGTHKSGPSLWGSSGRTGNPQEWTLPL 112
DRE +DP +G+ G H + SL G + P+ W+LPL
Sbjct: 592 DREHGMIDPDSGDEAQLNGGHSAEESL-GEPTQATVPETWSLPL 634
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.138 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,438,306
Number of Sequences: 37866
Number of extensions: 444720
Number of successful extensions: 1292
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 1093
Number of HSP's gapped (non-prelim): 289
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.