Guide to the Human Genome
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Name: RAD17 Sequence: fasta or formatted (584aa) NCBI GI: 19718790
Description:

RAD17 homolog isoform 4

Referenced in:

DNases, Recombination, and DNA Repair
Replication Proteins

Other entries for this name:
alt prot [670aa] RAD17 homolog isoform 1
alt prot [681aa] RAD17 homolog isoform 2
alt prot [505aa] RAD17 homolog isoform 3
alt prot [670aa] RAD17 homolog isoform 1
alt prot [670aa] RAD17 homolog isoform 1
alt prot [670aa] RAD17 homolog isoform 1
alt prot [670aa] RAD17 homolog isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         29           2
 C cysteine            1.7         10           1
 D aspartate           5.5         32           2
 E glutamate           7.2         42           2
 F phenylalanine       4.8         28           2
 G glycine             6.0         35           3
 H histidine           2.6         15           1
 I isoleucine          6.5         38           3
 K lysine              6.7         39           3
 L leucine            11.5         67           2
 M methionine          2.6         15           2
 N asparagine          4.5         26           2
 P proline             5.5         32           2
 Q glutamine           5.3         31           1
 R arginine            5.3         31           2
 S serine              8.4         49           3
 T threonine           4.3         25           3
 V valine              3.8         22           2
 W tryptophan          0.9          5           1
 Y tyrosine            2.2         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAD17 homolog isoform 4 
RAD17                 0.996   RAD17 homolog isoform 1 
RAD17                 0.996   RAD17 homolog isoform 1 
RAD17                 0.996   RAD17 homolog isoform 1 
RAD17                 0.996   RAD17 homolog isoform 1 
RAD17                 0.996   RAD17 homolog isoform 1 
RAD17                 0.996   RAD17 homolog isoform 2 
RAD17                 0.858   RAD17 homolog isoform 3 
WRNIP1                0.011   Werner helicase interacting protein isoform 2 
ATAD1                 0.007   ATPase family, AAA domain containing 1 
WRNIP1                0.007   Werner helicase interacting protein isoform 1 
CHTF18                0.007   CTF18, chromosome transmission fidelity factor 18 ho...
AKD1                  0.007   adenylate kinase domain containing 1 isoform 1 [Hom...
NVL                   0.007   nuclear VCP-like isoform 2 
NVL                   0.007   nuclear VCP-like isoform 1 
SPATA5                0.006   spermatogenesis associated 5 
PEX6                  0.006   peroxisomal biogenesis factor 6 
ABCD2                 0.006   ATP-binding cassette, sub-family D, member 2 
ASH1L                 0.006   absent, small, or homeotic 1-like 
RFC1                  0.005   replication factor C large subunit 
RUVBL1                0.005   RuvB-like 1 
GUK1                  0.005   guanylate kinase 1 isoform a 
RAD51L1               0.005   RAD51-like 1 isoform 3 
RAD51L1               0.005   RAD51-like 1 isoform 2 
RAD51L1               0.005   RAD51-like 1 isoform 1 
CDC6                  0.005   cell division cycle 6 protein 
ORC1L                 0.005   origin recognition complex, subunit 1 
HELB                  0.005   helicase (DNA) B 
ABCD1                 0.004   ATP-binding cassette, sub-family D (ALD), member 1 [H...
SPG7                  0.004   spastic paraplegia 7 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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