Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RAD17 Sequence: fasta or formatted (505aa) NCBI GI: 19718788
Description:

RAD17 homolog isoform 3

Referenced in:

DNases, Recombination, and DNA Repair
Replication Proteins

Other entries for this name:
alt prot [670aa] RAD17 homolog isoform 1
alt prot [681aa] RAD17 homolog isoform 2
alt prot [584aa] RAD17 homolog isoform 4
alt prot [670aa] RAD17 homolog isoform 1
alt prot [670aa] RAD17 homolog isoform 1
alt prot [670aa] RAD17 homolog isoform 1
alt prot [670aa] RAD17 homolog isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         27           2
 C cysteine            1.8          9           1
 D aspartate           5.7         29           2
 E glutamate           6.9         35           2
 F phenylalanine       5.1         26           2
 G glycine             5.5         28           3
 H histidine           2.4         12           1
 I isoleucine          6.3         32           3
 K lysine              5.7         29           2
 L leucine            11.7         59           2
 M methionine          2.8         14           2
 N asparagine          4.8         24           2
 P proline             5.3         27           1
 Q glutamine           4.8         24           1
 R arginine            5.9         30           2
 S serine              9.3         47           3
 T threonine           4.0         20           1
 V valine              3.4         17           2
 W tryptophan          0.6          3           1
 Y tyrosine            2.6         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAD17 homolog isoform 3 
RAD17                 1.000   RAD17 homolog isoform 1 
RAD17                 1.000   RAD17 homolog isoform 1 
RAD17                 1.000   RAD17 homolog isoform 1 
RAD17                 1.000   RAD17 homolog isoform 4 
RAD17                 1.000   RAD17 homolog isoform 1 
RAD17                 1.000   RAD17 homolog isoform 1 
RAD17                 1.000   RAD17 homolog isoform 2 
CHTF18                0.008   CTF18, chromosome transmission fidelity factor 18 ho...
POGK                  0.005   pogo transposable element with KRAB domain 
HSPD1                 0.005   chaperonin 
HSPD1                 0.005   chaperonin 
LOC100292479          0.004   PREDICTED: hypothetical protein 
LOC100290786          0.004   PREDICTED: hypothetical protein XP_002346497 
LOC100289094          0.004   PREDICTED: hypothetical protein XP_002342355 
LOC100289063          0.004   PREDICTED: hypothetical protein XP_002342354 
CD180                 0.004   CD180 molecule 
TRIM29                0.004   tripartite motif protein TRIM29 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press