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Search of human proteins with 239747844
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747844 PREDICTED: hypothetical protein XP_002346445 [Homo
sapiens]
(263 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747844 PREDICTED: hypothetical protein XP_002346445 [Homo ... 538 e-153
gi|239753274 PREDICTED: hypothetical protein [Homo sapiens] 536 e-153
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 44 2e-04
gi|13994287 BTE-binding protein 4 [Homo sapiens] 43 2e-04
gi|169167405 PREDICTED: hypothetical protein [Homo sapiens] 42 5e-04
gi|48762934 alpha 2 type I collagen [Homo sapiens] 40 0.002
gi|42821110 hypothetical protein LOC340602 [Homo sapiens] 40 0.002
gi|4758392 forkhead box D1 [Homo sapiens] 40 0.002
gi|169164474 PREDICTED: hypothetical protein [Homo sapiens] 39 0.005
gi|239747958 PREDICTED: hypothetical protein isoform 4 [Homo sap... 39 0.005
gi|239741853 PREDICTED: hypothetical protein isoform 2 [Homo sap... 39 0.005
gi|239755739 PREDICTED: hypothetical protein [Homo sapiens] 39 0.006
gi|113423529 PREDICTED: hypothetical protein [Homo sapiens] 39 0.006
gi|239748099 PREDICTED: hypothetical protein [Homo sapiens] 38 0.008
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 38 0.008
gi|239756517 PREDICTED: hypothetical protein [Homo sapiens] 38 0.010
gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo ... 38 0.010
gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo ... 38 0.010
gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo ... 37 0.013
gi|239755142 PREDICTED: hypothetical protein [Homo sapiens] 37 0.013
gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo ... 37 0.013
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 37 0.013
gi|39812496 Sp8 transcription factor isoform 1 [Homo sapiens] 37 0.018
gi|39812501 Sp8 transcription factor isoform 2 [Homo sapiens] 37 0.018
gi|239753353 PREDICTED: hypothetical protein [Homo sapiens] 37 0.018
gi|239747921 PREDICTED: hypothetical protein XP_002346480 [Homo ... 37 0.018
gi|239741815 PREDICTED: hypothetical protein XP_002342320 [Homo ... 37 0.018
gi|239754911 PREDICTED: hypothetical protein [Homo sapiens] 37 0.023
gi|239749451 PREDICTED: hypothetical protein [Homo sapiens] 37 0.023
gi|239743581 PREDICTED: hypothetical protein [Homo sapiens] 37 0.023
>gi|239747844 PREDICTED: hypothetical protein XP_002346445 [Homo
sapiens]
Length = 263
Score = 538 bits (1386), Expect = e-153
Identities = 263/263 (100%), Positives = 263/263 (100%)
Query: 1 MLGLWRCEVAHRPACVAGTGQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGF 60
MLGLWRCEVAHRPACVAGTGQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGF
Sbjct: 1 MLGLWRCEVAHRPACVAGTGQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGF 60
Query: 61 CAASGGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPP 120
CAASGGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPP
Sbjct: 61 CAASGGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPP 120
Query: 121 EDSAGPFLFLSREHVRGGARGGHGHCGAQGRRRRACRTSLRLGASRRLAWSPRTSPGLRG 180
EDSAGPFLFLSREHVRGGARGGHGHCGAQGRRRRACRTSLRLGASRRLAWSPRTSPGLRG
Sbjct: 121 EDSAGPFLFLSREHVRGGARGGHGHCGAQGRRRRACRTSLRLGASRRLAWSPRTSPGLRG 180
Query: 181 TSPAQAWPCLLQASESFSAFREPQRGTFPANAAAKESLGGVILTAFLASAGEQLGDTADA 240
TSPAQAWPCLLQASESFSAFREPQRGTFPANAAAKESLGGVILTAFLASAGEQLGDTADA
Sbjct: 181 TSPAQAWPCLLQASESFSAFREPQRGTFPANAAAKESLGGVILTAFLASAGEQLGDTADA 240
Query: 241 RASSPTTPRSAPSSDSFPRSAQK 263
RASSPTTPRSAPSSDSFPRSAQK
Sbjct: 241 RASSPTTPRSAPSSDSFPRSAQK 263
>gi|239753274 PREDICTED: hypothetical protein [Homo sapiens]
Length = 263
Score = 536 bits (1382), Expect = e-153
Identities = 262/263 (99%), Positives = 262/263 (99%)
Query: 1 MLGLWRCEVAHRPACVAGTGQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGF 60
MLGLWRCEVAHRPACVAGTGQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGF
Sbjct: 1 MLGLWRCEVAHRPACVAGTGQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGF 60
Query: 61 CAASGGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPP 120
CAASGGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPP
Sbjct: 61 CAASGGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPP 120
Query: 121 EDSAGPFLFLSREHVRGGARGGHGHCGAQGRRRRACRTSLRLGASRRLAWSPRTSPGLRG 180
EDSAGPFLFL REHVRGGARGGHGHCGAQGRRRRACRTSLRLGASRRLAWSPRTSPGLRG
Sbjct: 121 EDSAGPFLFLGREHVRGGARGGHGHCGAQGRRRRACRTSLRLGASRRLAWSPRTSPGLRG 180
Query: 181 TSPAQAWPCLLQASESFSAFREPQRGTFPANAAAKESLGGVILTAFLASAGEQLGDTADA 240
TSPAQAWPCLLQASESFSAFREPQRGTFPANAAAKESLGGVILTAFLASAGEQLGDTADA
Sbjct: 181 TSPAQAWPCLLQASESFSAFREPQRGTFPANAAAKESLGGVILTAFLASAGEQLGDTADA 240
Query: 241 RASSPTTPRSAPSSDSFPRSAQK 263
RASSPTTPRSAPSSDSFPRSAQK
Sbjct: 241 RASSPTTPRSAPSSDSFPRSAQK 263
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 43.5 bits (101), Expect = 2e-04
Identities = 45/141 (31%), Positives = 56/141 (39%), Gaps = 23/141 (16%)
Query: 20 GQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCAASGGSRLGDQRQEVRAA 79
GQP PP P +A G ++ + P G PG NG + G R G+ + A
Sbjct: 330 GQPGPPGPPGTAGFPGSPGAKGEVGPAGSPG------SNG----APGQR-GEPGPQGHAG 378
Query: 80 AGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSAGPFLFLSREHVRGGA 139
A PG G S PA P APGL+ +R PP GP +RGGA
Sbjct: 379 AQGPPGPPG---INGSPGGKGEMGPAGIPGAPGLMGARGPP----GPAGANGAPGLRGGA 431
Query: 140 -----RGGHGHCGAQGRRRRA 155
G G G +G R A
Sbjct: 432 GEPGKNGAKGEPGPRGERGEA 452
Score = 42.0 bits (97), Expect = 5e-04
Identities = 55/194 (28%), Positives = 63/194 (32%), Gaps = 22/194 (11%)
Query: 13 PACVAGTGQPSPPSPERSACGCGLHLSRRKSAPRGGPGVL--PGTKLNGFCAASGGSRLG 70
P G G P P S G S PRG PGV+ PG K N G R G
Sbjct: 539 PGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGG 598
Query: 71 DQRQEVRAAAGQ--VPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSAGPFL 128
+ G+ G G T P P GL + PP ++ P
Sbjct: 599 PGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKP-- 656
Query: 129 FLSREHVRG-----GARGGHGHCGAQGRR---RRACRTSLRLGA------SRRLAWSPRT 174
+G GA GG G GA G R A LR GA + A P
Sbjct: 657 --GEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPG 714
Query: 175 SPGLRGTSPAQAWP 188
PG GT Q P
Sbjct: 715 PPGAAGTPGLQGMP 728
Score = 32.0 bits (71), Expect = 0.57
Identities = 40/152 (26%), Positives = 46/152 (30%), Gaps = 29/152 (19%)
Query: 13 PACVAGTGQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCAASGGSRLGDQ 72
P G P PP P A G R +S P GP PG + G R
Sbjct: 1040 PGAPGAPGHPGPPGPVGPAGKSG---DRGESGP-AGPAGAPGPAGSRGAPGPQGPRGDKG 1095
Query: 73 RQEVRAAAG--------------QVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRC 118
R AAG PG AG + A S A P P PG +
Sbjct: 1096 ETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSG 1155
Query: 119 PPEDSAGPFLFLSREHVRGGARGGHGHCGAQG 150
P P G RG G G++G
Sbjct: 1156 HPGPIGPP-----------GPRGNRGERGSEG 1176
Score = 29.3 bits (64), Expect = 3.7
Identities = 37/142 (26%), Positives = 48/142 (33%), Gaps = 17/142 (11%)
Query: 13 PACVAGTGQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCAASGGSRLGDQ 72
P G G PP P +A GL + RGG G PG K + G+
Sbjct: 701 PGPEGGKGAAGPPGPPGAAGTPGL---QGMPGERGGLG-SPGPKGDKGEPGGPGADGVPG 756
Query: 73 RQEVRAAAGQV--PGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSAGPFLFL 130
+ R G + PG AG + A P +PG PP + P
Sbjct: 757 KDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFP---- 812
Query: 131 SREHVRGGARGGHGHCGAQGRR 152
GA G +G G +G R
Sbjct: 813 -------GAPGQNGEPGGKGER 827
Score = 28.1 bits (61), Expect = 8.2
Identities = 30/106 (28%), Positives = 37/106 (34%), Gaps = 5/106 (4%)
Query: 47 GGPGVLPGTKLNGFCAASGGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAA 106
G PG+ L G A G +G + +PG AGAR + + P
Sbjct: 279 GAPGLKGENGLPGENGAPGP--MGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPG 336
Query: 107 PPCAPGLLASRCPPEDSAGPFLFLSREHVRG--GARGGHGHCGAQG 150
PP G S + GP G G G GH GAQG
Sbjct: 337 PPGTAGFPGSP-GAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQG 381
>gi|13994287 BTE-binding protein 4 [Homo sapiens]
Length = 252
Score = 43.1 bits (100), Expect = 2e-04
Identities = 59/220 (26%), Positives = 81/220 (36%), Gaps = 43/220 (19%)
Query: 25 PSPERS--ACGCGLHLSRRKSAPRGGPGVLP----GTKLNGFCAASGGSRLGDQRQEVRA 78
P PE + A G + +RR++A G PG P + AA+ ++R
Sbjct: 30 PGPEGAGPAAGLDVRAARREAASPGTPGPPPPPPAASGPGPGAAAAPHLLAASILADLRG 89
Query: 79 AAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLAS--RCPPEDSAGPFLFLS--REH 134
G PG GA A SS+ +S ++ AP AP A RCP D A + S + H
Sbjct: 90 GPGAAPG--GASPASSSSAASSPSSGRAPGAAPSAAAKSHRCPFPDCAKAYYKSSHLKSH 147
Query: 135 VRGGARGGHGHCGAQGRRRRACRT---------------------SLRLGASRRLAWSPR 173
+R C QG ++ R+ S R S LA R
Sbjct: 148 LRTHTGERPFACDWQGCDKKFARSDELARHHRTHTGEKRFSCPLCSKRFTRSDHLAKHAR 207
Query: 174 TSPGL----------RGTSPAQAWPCLLQASESFSAFREP 203
PG R TSP+ + PC L S + S P
Sbjct: 208 RHPGFHPDLLRRPGARSTSPSDSLPCSLAGSPAPSPAPSP 247
>gi|169167405 PREDICTED: hypothetical protein [Homo sapiens]
Length = 141
Score = 42.0 bits (97), Expect = 5e-04
Identities = 46/145 (31%), Positives = 61/145 (42%), Gaps = 26/145 (17%)
Query: 17 AGTGQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCAASGGSRLGDQR--Q 74
AG + P P +A +H RR SAPRGG PG G GG+R QR +
Sbjct: 4 AGRAREETPGPASTASRTRVHQQRRGSAPRGGESPDPGA---GAGDRRGGARQRPQRLSE 60
Query: 75 EVRAAAGQVPGEAGAR------RARSSAQLASRTAPAA------PPCAPGLLASRCPPED 122
+ A VPG A R S+ + R +PAA P C+ LA+R P+
Sbjct: 61 PRQPQAVPVPGAASYRLGLPPTLTSLSSSVPGRASPAARLRNRRPGCS---LATRLRPDG 117
Query: 123 ---SAGPFLFLSREHVRGGARGGHG 144
++GP R R G + G G
Sbjct: 118 VWATSGPAPLTPR---RAGDQEGRG 139
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 40.4 bits (93), Expect = 0.002
Identities = 45/152 (29%), Positives = 58/152 (38%), Gaps = 20/152 (13%)
Query: 16 VAGTGQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCAASGGS-------- 67
+ G PP P+ + G+ + + P GP LPG + G GG
Sbjct: 606 IGSRGPSGPPGPDGNKGEPGVVGAVGTAGP-SGPSGLPGER--GAAGIPGGKGEKGEPGL 662
Query: 68 --RLGDQ-RQEVRAAAGQV--PGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCP--P 120
+G+ R R A G V PG AGA R A A PA P +PG P P
Sbjct: 663 RGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGP 722
Query: 121 EDSAGPFLFLSREHVRG--GARGGHGHCGAQG 150
AGP + +G GA+G G G G
Sbjct: 723 NGFAGPAGAAGQPGAKGERGAKGPKGENGVVG 754
Score = 29.3 bits (64), Expect = 3.7
Identities = 40/136 (29%), Positives = 44/136 (32%), Gaps = 27/136 (19%)
Query: 20 GQPSPPSPERSACGCGLHLSRRKSAPRGGPG----VLPGTKLNGFCAASGGSRLGDQRQE 75
G P P G + PRG PG V P NGF +G
Sbjct: 682 GAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGP-NGFAGPAG---------- 730
Query: 76 VRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSAGPFLFLSREHV 135
AAGQ PG G R A+ P P A G PP GP +
Sbjct: 731 ---AAGQ-PGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPP----GP----AGSRG 778
Query: 136 RGGARGGHGHCGAQGR 151
GG G G GA GR
Sbjct: 779 DGGPPGMTGFPGAAGR 794
>gi|42821110 hypothetical protein LOC340602 [Homo sapiens]
Length = 503
Score = 40.0 bits (92), Expect = 0.002
Identities = 46/150 (30%), Positives = 58/150 (38%), Gaps = 26/150 (17%)
Query: 19 TGQPSPPSPERSACGCGLHLSRRKSAPRGGPGV-------LPGTKLNGFCAASGGSRLGD 71
T QP P P R+ HL + +P PG +PG G +A G +R G
Sbjct: 239 TAQPGPAFPHRAT-----HLDPARLSPESAPGPARRGRASVPGPARRGCDSAPGPARRGR 293
Query: 72 QRQEVRAAAGQVPGEAGARRARSSA---QLASRTAPA-----APPCAPGL-LASRCPPED 122
V A G+ ARR R SA L RTA + + PG L SR +
Sbjct: 294 DSAPVSAPRGRDSAPGSARRGRDSAPGPALRVRTARSDAGHRSTSTTPGTGLRSRSTQQR 353
Query: 123 SAGPFLFLSREHVRGGARGGHGHCGAQGRR 152
SA LSR + G A + CG R
Sbjct: 354 SA----LLSRRSLSGSA-DENPSCGTGSER 378
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 40.0 bits (92), Expect = 0.002
Identities = 33/124 (26%), Positives = 47/124 (37%), Gaps = 8/124 (6%)
Query: 22 PSPPSPERSACGCGLHLSRRKSAPRGG--PGVLPGTKLNGFCAASGGSRLGDQRQEVRA- 78
P PP P +A + P G PG LP + G S L + +
Sbjct: 310 PPPPPPHGAAAELARTAFGYRPHPLGAALPGPLPASAAKA--GGPGASALARSPFSIESI 367
Query: 79 ---AAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSAGPFLFLSREHV 135
+ G A A +A ++AQ + +P A P APG C + + GP L+R V
Sbjct: 368 IGGSLGPAAAAAAAAQAAAAAQASPSPSPVAAPPAPGSSGGGCAAQAAVGPAAALTRSLV 427
Query: 136 RGGA 139
A
Sbjct: 428 AAAA 431
>gi|169164474 PREDICTED: hypothetical protein [Homo sapiens]
Length = 259
Score = 38.9 bits (89), Expect = 0.005
Identities = 36/108 (33%), Positives = 43/108 (39%), Gaps = 9/108 (8%)
Query: 27 PERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCA-ASGGSRLG---DQRQEVRAAAGQ 82
P RS CG G S R GG T+ G CA A+ G LG A AG
Sbjct: 63 PARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGGDLGWAVALPHRPSALAGP 122
Query: 83 VPGEAGARRARSSA-QLASRTAPAAPPCAPGLLASR----CPPEDSAG 125
+P + R+AR +L +A A P PG R C P D G
Sbjct: 123 LPSQTAERQARPLVRELGRGSAAAGCPSLPGATTPRPRRCCVPRDLWG 170
>gi|239747958 PREDICTED: hypothetical protein isoform 4 [Homo
sapiens]
Length = 259
Score = 38.9 bits (89), Expect = 0.005
Identities = 36/108 (33%), Positives = 43/108 (39%), Gaps = 9/108 (8%)
Query: 27 PERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCA-ASGGSRLG---DQRQEVRAAAGQ 82
P RS CG G S R GG T+ G CA A+ G LG A AG
Sbjct: 63 PARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGGDLGWAVALPHRPSALAGP 122
Query: 83 VPGEAGARRARSSA-QLASRTAPAAPPCAPGLLASR----CPPEDSAG 125
+P + R+AR +L +A A P PG R C P D G
Sbjct: 123 LPSQTAERQARPLVRELGRGSAAAGCPSLPGATTPRPRRCCVPRDLWG 170
>gi|239741853 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 259
Score = 38.9 bits (89), Expect = 0.005
Identities = 36/108 (33%), Positives = 43/108 (39%), Gaps = 9/108 (8%)
Query: 27 PERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCA-ASGGSRLG---DQRQEVRAAAGQ 82
P RS CG G S R GG T+ G CA A+ G LG A AG
Sbjct: 63 PARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGGDLGWAVALPHRPSALAGP 122
Query: 83 VPGEAGARRARSSA-QLASRTAPAAPPCAPGLLASR----CPPEDSAG 125
+P + R+AR +L +A A P PG R C P D G
Sbjct: 123 LPSQTAERQARPLVRELGRGSAAAGCPSLPGATTPRPRRCCVPRDLWG 170
>gi|239755739 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 38.5 bits (88), Expect = 0.006
Identities = 53/171 (30%), Positives = 66/171 (38%), Gaps = 29/171 (16%)
Query: 12 RPACVAGTGQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCAASGGSRLGD 71
R AG GQ PP P R + ++ ++ GG P G AA GG+R G
Sbjct: 35 RAGLAAGKGQ-RPPGPGR------VRAAQARARRGGGARERPAEGARGPRAARGGARAGP 87
Query: 72 QRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRC--PPEDSAGPFLF 129
Q +RAA R R+ AQ AA CA +C P PF
Sbjct: 88 DAQ-LRAA----------RTHRARAQTPQLRREAA--CAGSFFFRKCRQSPRSHGQPFPQ 134
Query: 130 LSREHVRGGARGGHGHCGAQGRRRRACRTSLRLGASRRLAWSPRTSPGLRG 180
L R H + +G G GRR S R A+ RT+PGLRG
Sbjct: 135 L-RSHWQAPRQGWPAQEGG-GRR-----PSRREEAAALAGGGKRTAPGLRG 178
>gi|113423529 PREDICTED: hypothetical protein [Homo sapiens]
Length = 276
Score = 38.5 bits (88), Expect = 0.006
Identities = 40/132 (30%), Positives = 50/132 (37%), Gaps = 38/132 (28%)
Query: 65 GGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSA 124
GG R G+ R+E G G R++R A A R P PG A
Sbjct: 46 GGRRGGEGRREA--------GGGGGRKSREGAACARRLIRCPSPAPPG----------GA 87
Query: 125 GPFLFLSREHVRGGARGGHGHCGAQGRRRRACRTSLRLGASRRLAWSPRTSP-------- 176
G + G + G G G G RR CR RL +SR WS + +P
Sbjct: 88 G--------GLGEGRQDGGGEVGRAG--RRCCRRHRRLRSSR--LWSFKLTPPGRSCAGA 135
Query: 177 GLRGTSPAQAWP 188
G RG S + WP
Sbjct: 136 GSRGESKSFPWP 147
>gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 38.1 bits (87), Expect = 0.008
Identities = 55/181 (30%), Positives = 67/181 (37%), Gaps = 33/181 (18%)
Query: 76 VRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSAGPFLFLSREHV 135
V +AG GE G R + A+RT PA G+L GP +
Sbjct: 72 VGKSAGAAAGEEGGARLQ-----ATRTWPA------GIL--------EGGP-----QVAA 107
Query: 136 RGGARGGHGHCGAQGRRRRACRTSLRLGASRRLAWSPRTSPGLRGTSPAQAWPCLLQASE 195
RGG RG G G G RR A + R GASR LA P R W +A E
Sbjct: 108 RGGGRGWEG--GGLGARR-AVTAARRGGASRPLAGEPWREAARRRPQQCPQWG---RARE 161
Query: 196 SFSAFREPQRGTFPANAAAKESLGGVILTAFLASAGEQLGDTADARASSPTTPRSAPSSD 255
S SA R + A + G L A +G + ARA P P P+
Sbjct: 162 SRSAALASPRVSNAPTTPASRNPG---LRAQERQSGRRAAGGGGARAEPPRVPPCRPAGC 218
Query: 256 S 256
S
Sbjct: 219 S 219
Score = 29.6 bits (65), Expect = 2.8
Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 7/108 (6%)
Query: 5 WRCEVAHRPACVAGTGQPSPPSPERSACGCGLHLSRRKSAPRG-GPGVLPGTKLNGFCAA 63
WR RP G+ RSA +S + P PG+ + +G AA
Sbjct: 142 WREAARRRPQQCPQWGRARE---SRSAALASPRVSNAPTTPASRNPGLRAQERQSGRRAA 198
Query: 64 SGGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAP 111
GG G + + R + G +G R+R +A RT PP P
Sbjct: 199 GGG---GARAEPPRVPPCRPAGCSGGNRSRRAAGAGPRTTRRKPPPRP 243
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 38.1 bits (87), Expect = 0.008
Identities = 59/247 (23%), Positives = 85/247 (34%), Gaps = 48/247 (19%)
Query: 20 GQPSPPSPERSACGCGLHLSR----------RKSAPRGGPGVLPGTKLNGFCAASGGSRL 69
G+P+P P + GL L R R+ +P P P AA+ G
Sbjct: 464 GEPAPAPPAADSRWGGLDLRRKILTQRRERYRQRSPSPAPAPAP--------AAAAGPPT 515
Query: 70 GDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAP-PCAPGLLASRCPPEDSAGPFL 128
+ + R +G+ A+ +A +S T PA P P +P + G
Sbjct: 516 RKKSRRERKRSGE---------AKEAASSSSGTQPAPPAPASPWDSKKHRSRDRKPG--- 563
Query: 129 FLSREHVRGGARG-GHGHCGAQGRRRRACRTSLRLGASRRLAWSPRTSPGLRGTSPAQAW 187
H AR ++ RRR+ T R G SRR + R SP A
Sbjct: 564 ----SHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSRRSRSREKRRRRRRSASPPPA- 618
Query: 188 PCLLQASESFSAFREPQRGTFPANAAAKESLGGVILTAFLASAGEQLGDTADARASSPTT 247
S S S+ RE RG +K+ S GE+ +A +P
Sbjct: 619 -----TSSSSSSRRERHRGKHRDGGGSKKK------KKRSRSRGEKRSGDGSEKAPAPAP 667
Query: 248 PRSAPSS 254
P S +S
Sbjct: 668 PPSGSTS 674
>gi|239756517 PREDICTED: hypothetical protein [Homo sapiens]
Length = 316
Score = 37.7 bits (86), Expect = 0.010
Identities = 54/170 (31%), Positives = 62/170 (36%), Gaps = 23/170 (13%)
Query: 98 LASRTAPAAPPCAPGLLASRCPPEDSAGPFLFLSREHVRGGARGGHGHCGAQGRRRRACR 157
L+S + P +L + AGP R RGGA GG G C +GR R C
Sbjct: 56 LSSPSLGGGPAAGSAILRAGSRSPRGAGPGAAGPRAAGRGGAGGG-GRCCTRGRGRFPCA 114
Query: 158 TSLRLGASRRLAWSP---RTS-------PGLRG-TSPAQAWPCLLQASESFSAFREPQRG 206
S GA R SP R+S P LRG + +A P LL R
Sbjct: 115 GSGGRGARSRGCHSPSCCRSSSCAWHRWPQLRGREADPRASPALL------ICIAPRPRP 168
Query: 207 TFPA----NAAAKESLGGVILTAFLASAGEQLGDTADARASSPTTPRSAP 252
PA A A L L SAG RAS PT PR P
Sbjct: 169 ALPAALHIGARATAGLAAKRAQPQLCSAGTAARGRR-TRASPPTPPRPRP 217
>gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo
sapiens]
Length = 304
Score = 37.7 bits (86), Expect = 0.010
Identities = 54/170 (31%), Positives = 62/170 (36%), Gaps = 23/170 (13%)
Query: 98 LASRTAPAAPPCAPGLLASRCPPEDSAGPFLFLSREHVRGGARGGHGHCGAQGRRRRACR 157
L+S + P +L + AGP R RGGA GG G C +GR R C
Sbjct: 56 LSSPSLGGGPAAGSAILRAGSRSPRGAGPGAAGPRAAGRGGAGGG-GRCCTRGRGRFPCA 114
Query: 158 TSLRLGASRRLAWSP---RTS-------PGLRG-TSPAQAWPCLLQASESFSAFREPQRG 206
S GA R SP R+S P LRG + +A P LL R
Sbjct: 115 GSGGRGARSRGCHSPSCCRSSSCAWHRWPQLRGREAEPRASPALL------ICIAPRPRP 168
Query: 207 TFPA----NAAAKESLGGVILTAFLASAGEQLGDTADARASSPTTPRSAP 252
PA A A L L SAG RAS PT PR P
Sbjct: 169 ALPAALHIGARATAGLAAKRAQPQLCSAGTAARGRR-TRASPPTPPRPRP 217
>gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo
sapiens]
Length = 304
Score = 37.7 bits (86), Expect = 0.010
Identities = 54/170 (31%), Positives = 62/170 (36%), Gaps = 23/170 (13%)
Query: 98 LASRTAPAAPPCAPGLLASRCPPEDSAGPFLFLSREHVRGGARGGHGHCGAQGRRRRACR 157
L+S + P +L + AGP R RGGA GG G C +GR R C
Sbjct: 56 LSSPSLGGGPAAGSAILRAGSRSPRGAGPGAAGPRAAGRGGAGGG-GRCCTRGRGRFPCA 114
Query: 158 TSLRLGASRRLAWSP---RTS-------PGLRG-TSPAQAWPCLLQASESFSAFREPQRG 206
S GA R SP R+S P LRG + +A P LL R
Sbjct: 115 GSGGRGARSRGCHSPSCCRSSSCAWHRWPQLRGREAEPRASPALL------ICIAPRPRP 168
Query: 207 TFPA----NAAAKESLGGVILTAFLASAGEQLGDTADARASSPTTPRSAP 252
PA A A L L SAG RAS PT PR P
Sbjct: 169 ALPAALHIGARATAGLAAKRAQPQLCSAGTAARGRR-TRASPPTPPRPRP 217
>gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo
sapiens]
Length = 459
Score = 37.4 bits (85), Expect = 0.013
Identities = 53/196 (27%), Positives = 75/196 (38%), Gaps = 44/196 (22%)
Query: 77 RAAAGQVPGEAGARRARSSAQLASRTAPA----------APPCAPGLLASRCPPEDSAGP 126
R AA PG + AR +A R P PP APG ++ PP P
Sbjct: 61 RKAAQLQPGRGKSCGARRAALPLLRYPPEPGVFPFLVLWTPPFAPGRIS---PP----AP 113
Query: 127 FLFLSREHVRGGARGGHGHCGAQGRR--RRACRTSLRLGASRRLAWSPRTSPGLRGTSPA 184
FL++ + GG G A+G+R R A R G +RR+ +P ++ G SP+
Sbjct: 114 QAFLAQRSPARASPGG-GFTSAEGKRKTRPAGRGG---GRTRRVVAAPESAAAAPGRSPS 169
Query: 185 QAWPCLLQASESFSAFREPQRGTFPANAAAKESLGGVILTAFLASAGEQLGDTADARASS 244
A P ++ R R AA ++ G A +R++S
Sbjct: 170 PADPGSTSSATRVPRARRSSRRALQPRHAAPDAPG------------------APSRSTS 211
Query: 245 PTTPRSAPSSDSFPRS 260
TP AP FP S
Sbjct: 212 QATPPPAP---RFPAS 224
>gi|239755142 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 37.4 bits (85), Expect = 0.013
Identities = 38/131 (29%), Positives = 52/131 (39%), Gaps = 21/131 (16%)
Query: 3 GLWRCEVAHRPACVAGTGQPSPPSPERSACGCGLHLSRRKSAPR-----GGPGVLPGTKL 57
G W + P A P+ R +C L +RR SA R GG G L
Sbjct: 75 GGWSAALGSLPPPPAAACTALKPATRRGSCSAPLGPARRCSARRPRLHQGGAGRL----- 129
Query: 58 NGFCAASGGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASR 117
A+GG+ G++R R A + + AR +A R+A PP G+ A R
Sbjct: 130 -----AAGGAEAGERRSPNRGATSSL-----SPIARGAADTGVRSAAEDPPRRDGIAADR 179
Query: 118 CPPEDSAGPFL 128
P + S G L
Sbjct: 180 -PWQGSWGRLL 189
>gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo
sapiens]
Length = 459
Score = 37.4 bits (85), Expect = 0.013
Identities = 53/196 (27%), Positives = 75/196 (38%), Gaps = 44/196 (22%)
Query: 77 RAAAGQVPGEAGARRARSSAQLASRTAPA----------APPCAPGLLASRCPPEDSAGP 126
R AA PG + AR +A R P PP APG ++ PP P
Sbjct: 61 RKAAQLQPGRGKSCGARRAALPLLRYPPEPGVFPFLVLWTPPFAPGRIS---PP----AP 113
Query: 127 FLFLSREHVRGGARGGHGHCGAQGRR--RRACRTSLRLGASRRLAWSPRTSPGLRGTSPA 184
FL++ + GG G A+G+R R A R G +RR+ +P ++ G SP+
Sbjct: 114 QAFLAQRSPARASPGG-GFTSAEGKRKTRPAGRGG---GRTRRVVAAPESAAAAPGRSPS 169
Query: 185 QAWPCLLQASESFSAFREPQRGTFPANAAAKESLGGVILTAFLASAGEQLGDTADARASS 244
A P ++ R R AA ++ G A +R++S
Sbjct: 170 PADPGSTSSATRVPRARRSSRRALQPRHAAPDAPG------------------APSRSTS 211
Query: 245 PTTPRSAPSSDSFPRS 260
TP AP FP S
Sbjct: 212 QATPPPAP---RFPAS 224
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 37.4 bits (85), Expect = 0.013
Identities = 72/257 (28%), Positives = 87/257 (33%), Gaps = 56/257 (21%)
Query: 24 PPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCAASGGSRLGD---QRQEVRAAA 80
P SP + CG S S R GP ++ G A+ LGD EV A
Sbjct: 127 PDSPPSTFCGDS-GFSGSSSYGRLGP-----SEPRGIYASERPKSLGDASPSAPEVVGAR 180
Query: 81 GQVP----------GEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSAGPFLFL 130
VP G + A SSA+ +R P P +A R P P
Sbjct: 181 AAVPRSFSAPYPTAGGSAGPEACSSAERRARAGPFLTPSPLHAVAMRSPRPCGRPP---T 237
Query: 131 SREHVRGGARGGHGHCGAQGRRRRACRTSLRLGASRRLAWSPRTSPG------LRGTSPA 184
G R G+ A RRRR RR A PRTSPG R S
Sbjct: 238 DSPDAGGAGRPLDGYISALLRRRR-----------RRGAGQPRTSPGGADGGPRRQNSVR 286
Query: 185 QAWPCLLQASESFSAFREP---QRGTFPANAAAKESLGGVILTAFLASAGEQLGDTADAR 241
Q P + S REP + G P + AA L+ AS+ E
Sbjct: 287 QRPPDASPSPGSARPAREPSLERVGGHPTSPAA--------LSRAWASSWE------SEA 332
Query: 242 ASSPTTPRSAPSSDSFP 258
A P P +APS P
Sbjct: 333 APEPAAPPAAPSPPDSP 349
>gi|39812496 Sp8 transcription factor isoform 1 [Homo sapiens]
Length = 508
Score = 37.0 bits (84), Expect = 0.018
Identities = 40/141 (28%), Positives = 52/141 (36%), Gaps = 16/141 (11%)
Query: 18 GTGQPSPPS--PERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCAASGGSRLGDQRQE 75
G+ PSP S S+ G G H +R S+ + G+ L+ F SG SR G
Sbjct: 28 GSPSPSPSSLSDSSSSFGKGFHPWKRSSSSSSASCNVVGSSLSSF-GVSGASRNGGSSSA 86
Query: 76 VRAAAGQVPGEA---------GARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSAGP 126
AAA A G S+ L S +A AA A A+ A
Sbjct: 87 AAAAAAAAAAAAALVSDSFSCGGSPGSSAFSLTSSSAAAAAAAA----AAAASSSPFAND 142
Query: 127 FLFLSREHVRGGARGGHGHCG 147
+ V GG+ GG G G
Sbjct: 143 YSVFQAPGVSGGSGGGGGGGG 163
>gi|39812501 Sp8 transcription factor isoform 2 [Homo sapiens]
Length = 490
Score = 37.0 bits (84), Expect = 0.018
Identities = 40/141 (28%), Positives = 52/141 (36%), Gaps = 16/141 (11%)
Query: 18 GTGQPSPPS--PERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCAASGGSRLGDQRQE 75
G+ PSP S S+ G G H +R S+ + G+ L+ F SG SR G
Sbjct: 10 GSPSPSPSSLSDSSSSFGKGFHPWKRSSSSSSASCNVVGSSLSSF-GVSGASRNGGSSSA 68
Query: 76 VRAAAGQVPGEA---------GARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSAGP 126
AAA A G S+ L S +A AA A A+ A
Sbjct: 69 AAAAAAAAAAAAALVSDSFSCGGSPGSSAFSLTSSSAAAAAAAA----AAAASSSPFAND 124
Query: 127 FLFLSREHVRGGARGGHGHCG 147
+ V GG+ GG G G
Sbjct: 125 YSVFQAPGVSGGSGGGGGGGG 145
>gi|239753353 PREDICTED: hypothetical protein [Homo sapiens]
Length = 448
Score = 37.0 bits (84), Expect = 0.018
Identities = 45/167 (26%), Positives = 62/167 (37%), Gaps = 18/167 (10%)
Query: 65 GGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAA----PPCAPGLLASRCPP 120
GG R G + + AA+ PGE R+ SA+ ASR A+ P +PG +
Sbjct: 25 GGGRAGGTGRSITAASELSPGERARRKKPQSAREASRAWEASISRDPALSPGRGRRQTGS 84
Query: 121 EDSAGPFLFLSREHVRGGARGGHG-HCGAQGRRRRACRTSLRLGASRRLAWSPRTSPGLR 179
G VRGGAR ++ R R L G+ R A S S GL
Sbjct: 85 PGGEG-------RQVRGGARNSRDPGLRSEMRPFREAFAKLLSGSPERGALSGEFSLGLE 137
Query: 180 GT------SPAQAWPCLLQASESFSAFREPQRGTFPANAAAKESLGG 220
+PA ++ S ++ +RG P A L G
Sbjct: 138 NRPRAHRGAPAAVMVVVVMRLRGLSGVQQRRRGLQPELPAPLPPLPG 184
>gi|239747921 PREDICTED: hypothetical protein XP_002346480 [Homo
sapiens]
Length = 448
Score = 37.0 bits (84), Expect = 0.018
Identities = 45/167 (26%), Positives = 62/167 (37%), Gaps = 18/167 (10%)
Query: 65 GGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAA----PPCAPGLLASRCPP 120
GG R G + + AA+ PGE R+ SA+ ASR A+ P +PG +
Sbjct: 25 GGGRAGGTGRSITAASELSPGERARRKKPQSAREASRAWEASISRDPALSPGRGRRQTGS 84
Query: 121 EDSAGPFLFLSREHVRGGARGGHG-HCGAQGRRRRACRTSLRLGASRRLAWSPRTSPGLR 179
G VRGGAR ++ R R L G+ R A S S GL
Sbjct: 85 PGGEG-------RQVRGGARNSRDPGLRSEMRPFREAFAKLLSGSPERGALSGEFSLGLE 137
Query: 180 GT------SPAQAWPCLLQASESFSAFREPQRGTFPANAAAKESLGG 220
+PA ++ S ++ +RG P A L G
Sbjct: 138 NRPRAHRGAPAAVMVVVVMRLRGLSGVQQRRRGLQPELPAPLPPLPG 184
>gi|239741815 PREDICTED: hypothetical protein XP_002342320 [Homo
sapiens]
Length = 448
Score = 37.0 bits (84), Expect = 0.018
Identities = 45/167 (26%), Positives = 62/167 (37%), Gaps = 18/167 (10%)
Query: 65 GGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAA----PPCAPGLLASRCPP 120
GG R G + + AA+ PGE R+ SA+ ASR A+ P +PG +
Sbjct: 25 GGGRAGGTGRSITAASELSPGERARRKKPQSAREASRAWEASISRDPALSPGRGRRQTGS 84
Query: 121 EDSAGPFLFLSREHVRGGARGGHG-HCGAQGRRRRACRTSLRLGASRRLAWSPRTSPGLR 179
G VRGGAR ++ R R L G+ R A S S GL
Sbjct: 85 PGGEG-------RQVRGGARNSRDPGLRSEMRPFREAFAKLLSGSPERGALSGEFSLGLE 137
Query: 180 GT------SPAQAWPCLLQASESFSAFREPQRGTFPANAAAKESLGG 220
+PA ++ S ++ +RG P A L G
Sbjct: 138 NRPRAHRGAPAAVMVVVVMRLRGLSGVQQRRRGLQPELPAPLPPLPG 184
>gi|239754911 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 36.6 bits (83), Expect = 0.023
Identities = 48/164 (29%), Positives = 60/164 (36%), Gaps = 25/164 (15%)
Query: 25 PSPERSACGCGL---HLSRRKSAP--RGGPGVLPGTKLNGFCAASGGSRLGDQRQEVRAA 79
P P +A C L L +SAP R GP LP + C R +
Sbjct: 121 PQPHGAASSCSLPRCRLCPERSAPPRRRGPPPLPTS-----C------------HWARRS 163
Query: 80 AGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSAGPFL--FLSREHVRG 137
G A + R A+ AP+ P +P SRCPP A FL SR
Sbjct: 164 CALRRGGAASWRRGPGTPAAAPEAPSPPDHSPSPWTSRCPPCPHASSFLPPGQSRCLRLP 223
Query: 138 GARGGHGHCGAQGR-RRRACRTSLRLGASRRLAWSPRTSPGLRG 180
GG G QGR + +A + +R R P PG RG
Sbjct: 224 LPGGGGGQRALQGRLKTQAGKRGVRKRGGWRERERPSADPGERG 267
>gi|239749451 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 36.6 bits (83), Expect = 0.023
Identities = 48/164 (29%), Positives = 60/164 (36%), Gaps = 25/164 (15%)
Query: 25 PSPERSACGCGL---HLSRRKSAP--RGGPGVLPGTKLNGFCAASGGSRLGDQRQEVRAA 79
P P +A C L L +SAP R GP LP + C R +
Sbjct: 121 PQPHGAASSCSLPRCRLCPERSAPPRRRGPPPLPTS-----C------------HWARRS 163
Query: 80 AGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSAGPFL--FLSREHVRG 137
G A + R A+ AP+ P +P SRCPP A FL SR
Sbjct: 164 CALRRGGAASWRRGPGTPAAAPEAPSPPDHSPSPWTSRCPPCPHASSFLPPGQSRCLRLP 223
Query: 138 GARGGHGHCGAQGR-RRRACRTSLRLGASRRLAWSPRTSPGLRG 180
GG G QGR + +A + +R R P PG RG
Sbjct: 224 LPGGGGGQRALQGRLKTQAGKRGVRKRGGWRERERPSADPGERG 267
>gi|239743581 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 36.6 bits (83), Expect = 0.023
Identities = 48/164 (29%), Positives = 60/164 (36%), Gaps = 25/164 (15%)
Query: 25 PSPERSACGCGL---HLSRRKSAP--RGGPGVLPGTKLNGFCAASGGSRLGDQRQEVRAA 79
P P +A C L L +SAP R GP LP + C R +
Sbjct: 121 PQPHGAASSCSLPRCRLCPERSAPPRRRGPPPLPTS-----C------------HWARRS 163
Query: 80 AGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSAGPFL--FLSREHVRG 137
G A + R A+ AP+ P +P SRCPP A FL SR
Sbjct: 164 CALRRGGAASWRRGPGTPAAAPEAPSPPDHSPSPWTSRCPPCPHASSFLPPGQSRCLRLP 223
Query: 138 GARGGHGHCGAQGR-RRRACRTSLRLGASRRLAWSPRTSPGLRG 180
GG G QGR + +A + +R R P PG RG
Sbjct: 224 LPGGGGGQRALQGRLKTQAGKRGVRKRGGWRERERPSADPGERG 267
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,845,582
Number of Sequences: 37866
Number of extensions: 717531
Number of successful extensions: 4884
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 369
Number of HSP's that attempted gapping in prelim test: 4366
Number of HSP's gapped (non-prelim): 850
length of query: 263
length of database: 18,247,518
effective HSP length: 100
effective length of query: 163
effective length of database: 14,460,918
effective search space: 2357129634
effective search space used: 2357129634
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.