Guide to the Human Genome
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Name: LOC100292591 Sequence: fasta or formatted (219aa) NCBI GI: 239755142
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.6         32           3
 C cysteine            1.4          3           1
 D aspartate           2.3          5           1
 E glutamate           6.4         14           1
 F phenylalanine       1.8          4           1
 G glycine            14.2         31           3
 H histidine           1.8          4           1
 I isoleucine          1.8          4           1
 K lysine              1.8          4           1
 L leucine             7.8         17           2
 M methionine          1.4          3           1
 N asparagine          1.8          4           1
 P proline            10.5         23           4
 Q glutamine           1.4          3           1
 R arginine           16.4         36           2
 S serine              9.1         20           2
 T threonine           2.3          5           1
 V valine              1.4          3           1
 W tryptophan          1.4          3           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287994          0.707   PREDICTED: hypothetical protein 
LOC100287994          0.707   PREDICTED: hypothetical protein XP_002342988 
LOC729570             0.040   PREDICTED: hypothetical protein 
LOC729570             0.040   PREDICTED: hypothetical protein 
LOC729570             0.040   PREDICTED: hypothetical protein 
SRRM2                 0.040   splicing coactivator subunit SRm300 
LOC100127891          0.038   PREDICTED: hypothetical protein 
LOC100288796          0.038   PREDICTED: hypothetical protein 
LOC100288796          0.038   PREDICTED: hypothetical protein XP_002343710 
ZNRF2                 0.038   zinc finger/RING finger 2 
LOC100132369          0.035   PREDICTED: hypothetical protein 
LOC100132369          0.035   PREDICTED: hypothetical protein 
LOC100132369          0.035   PREDICTED: hypothetical protein 
LOC100287063          0.035   PREDICTED: hypothetical protein 
BBC3                  0.035   BCL2 binding component 3 isoform 1 
ZCCHC3                0.035   zinc finger, CCHC domain containing 3 
LOC338758             0.035   PREDICTED: hypothetical protein 
LOC338758             0.035   PREDICTED: hypothetical protein 
LOC100293081          0.033   PREDICTED: hypothetical protein 
FLJ37078              0.033   hypothetical protein LOC222183 
LOC338758             0.033   PREDICTED: hypothetical protein 
LOC100292035          0.033   PREDICTED: hypothetical protein XP_002345623 
GRIN2D                0.033   N-methyl-D-aspartate receptor subunit 2D precursor ...
PRR12                 0.033   proline rich 12 
MTX1                  0.031   metaxin 1 isoform 1 
MTX1                  0.031   metaxin 1 isoform 2 
DACT3                 0.031   thymus expressed gene 3-like 
LOC100130360          0.031   PREDICTED: hypothetical protein 
WIPF1                 0.031   WAS/WASL interacting protein family, member 1 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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