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Search of human proteins with 239747832
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747832 PREDICTED: similar to F-actin capping protein beta
subunit [Homo sapiens]
(95 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753255 PREDICTED: similar to hCG1793552 [Homo sapiens] 198 9e-52
gi|239747832 PREDICTED: similar to F-actin capping protein beta ... 198 9e-52
gi|239741698 PREDICTED: similar to hCG1793552 [Homo sapiens] 198 9e-52
gi|4826659 F-actin capping protein beta subunit [Homo sapiens] 121 1e-28
gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapi... 30 0.42
gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sap... 30 0.42
gi|218505793 protocadherin 15 isoform CD3-2 precursor [Homo sapi... 30 0.42
gi|218505791 protocadherin 15 isoform CD3-1 precursor [Homo sapi... 30 0.42
gi|218505789 protocadherin 15 isoform CD2-2 precursor [Homo sapi... 30 0.42
gi|218505787 protocadherin 15 isoform CD2-1 precursor [Homo sapi... 30 0.42
gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapi... 30 0.42
gi|218505783 protocadherin 15 isoform CD1-8 precursor [Homo sapi... 30 0.42
gi|218505781 protocadherin 15 isoform CD1-7 precursor [Homo sapi... 30 0.42
gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapi... 30 0.42
gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapi... 30 0.42
gi|218505775 protocadherin 15 isoform CD1-1 precursor [Homo sapi... 30 0.42
gi|54234040 vacuolar protein sorting 54 isoform 2 [Homo sapiens] 28 1.2
gi|54234034 vacuolar protein sorting 54 isoform 1 [Homo sapiens] 28 1.2
gi|40254834 kinesin family member 1C [Homo sapiens] 28 1.6
gi|59823631 G protein-coupled receptor 125 [Homo sapiens] 27 3.5
gi|68348709 formin binding protein 1-like isoform 1 [Homo sapiens] 27 4.6
gi|41581463 formin binding protein 1-like isoform 2 [Homo sapiens] 27 4.6
gi|224282178 GDNF family receptor alpha 1 isoform b preproprotei... 26 6.0
gi|22035692 GDNF family receptor alpha 1 isoform b preproprotein... 26 6.0
gi|4758502 hyaluronan binding protein 2 preproprotein [Homo sapi... 26 6.0
gi|21359945 chromosome condensation protein G [Homo sapiens] 26 6.0
gi|143770880 laminin, beta 4 [Homo sapiens] 26 7.8
gi|19924175 axonal transport of synaptic vesicles [Homo sapiens] 26 7.8
gi|8922911 radical S-adenosyl methionine domain containing 1 [Ho... 26 7.8
>gi|239753255 PREDICTED: similar to hCG1793552 [Homo sapiens]
Length = 95
Score = 198 bits (503), Expect = 9e-52
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MGWKITDTRMGTAAASATMSDQQLDYALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPS 60
MGWKITDTRMGTAAASATMSDQQLDYALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPS
Sbjct: 1 MGWKITDTRMGTAAASATMSDQQLDYALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPS 60
Query: 61 VNQIMKIARDKEVGKDYLLCDCNRDGDCYRSRGLL 95
VNQIMKIARDKEVGKDYLLCDCNRDGDCYRSRGLL
Sbjct: 61 VNQIMKIARDKEVGKDYLLCDCNRDGDCYRSRGLL 95
>gi|239747832 PREDICTED: similar to F-actin capping protein beta
subunit [Homo sapiens]
Length = 95
Score = 198 bits (503), Expect = 9e-52
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MGWKITDTRMGTAAASATMSDQQLDYALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPS 60
MGWKITDTRMGTAAASATMSDQQLDYALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPS
Sbjct: 1 MGWKITDTRMGTAAASATMSDQQLDYALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPS 60
Query: 61 VNQIMKIARDKEVGKDYLLCDCNRDGDCYRSRGLL 95
VNQIMKIARDKEVGKDYLLCDCNRDGDCYRSRGLL
Sbjct: 61 VNQIMKIARDKEVGKDYLLCDCNRDGDCYRSRGLL 95
>gi|239741698 PREDICTED: similar to hCG1793552 [Homo sapiens]
Length = 95
Score = 198 bits (503), Expect = 9e-52
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MGWKITDTRMGTAAASATMSDQQLDYALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPS 60
MGWKITDTRMGTAAASATMSDQQLDYALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPS
Sbjct: 1 MGWKITDTRMGTAAASATMSDQQLDYALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPS 60
Query: 61 VNQIMKIARDKEVGKDYLLCDCNRDGDCYRSRGLL 95
VNQIMKIARDKEVGKDYLLCDCNRDGDCYRSRGLL
Sbjct: 61 VNQIMKIARDKEVGKDYLLCDCNRDGDCYRSRGLL 95
>gi|4826659 F-actin capping protein beta subunit [Homo sapiens]
Length = 272
Score = 121 bits (303), Expect = 1e-28
Identities = 60/73 (82%), Positives = 64/73 (87%)
Query: 19 MSDQQLDYALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPSVNQIMKIARDKEVGKDYL 78
MSDQQLD ALDLMR LPPQQIEK LS+LIDL+P LCEDLL SV+Q +KIARDK VGKDYL
Sbjct: 1 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 60
Query: 79 LCDCNRDGDCYRS 91
LCD NRDGD YRS
Sbjct: 61 LCDYNRDGDSYRS 73
>gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapiens]
Length = 1955
Score = 30.0 bits (66), Expect = 0.42
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 23 QLDYALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPSVNQIMKIARDKEVG-----KDY 77
QLD + ++ ++PP +EKK+ +L +++ ++ +P +++ + G +DY
Sbjct: 1245 QLDMQV-IVSNVPPTLVEKKIEDLTEILDRYVQEQIPGAKVVVESIGARRHGDAFSLEDY 1303
Query: 78 LLCD 81
CD
Sbjct: 1304 TKCD 1307
>gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sapiens]
Length = 1932
Score = 30.0 bits (66), Expect = 0.42
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 23 QLDYALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPSVNQIMKIARDKEVG-----KDY 77
QLD + ++ ++PP +EKK+ +L +++ ++ +P +++ + G +DY
Sbjct: 1223 QLDMQV-IVSNVPPTLVEKKIEDLTEILDRYVQEQIPGAKVVVESIGARRHGDAFSLEDY 1281
Query: 78 LLCD 81
CD
Sbjct: 1282 TKCD 1285
>gi|218505793 protocadherin 15 isoform CD3-2 precursor [Homo sapiens]
Length = 1677
Score = 30.0 bits (66), Expect = 0.42
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 23 QLDYALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPSVNQIMKIARDKEVG-----KDY 77
QLD + ++ ++PP +EKK+ +L +++ ++ +P +++ + G +DY
Sbjct: 1245 QLDMQV-IVSNVPPTLVEKKIEDLTEILDRYVQEQIPGAKVVVESIGARRHGDAFSLEDY 1303
Query: 78 LLCD 81
CD
Sbjct: 1304 TKCD 1307
>gi|218505791 protocadherin 15 isoform CD3-1 precursor [Homo sapiens]
Length = 1682
Score = 30.0 bits (66), Expect = 0.42
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 23 QLDYALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPSVNQIMKIARDKEVG-----KDY 77
QLD + ++ ++PP +EKK+ +L +++ ++ +P +++ + G +DY
Sbjct: 1250 QLDMQV-IVSNVPPTLVEKKIEDLTEILDRYVQEQIPGAKVVVESIGARRHGDAFSLEDY 1308
Query: 78 LLCD 81
CD
Sbjct: 1309 TKCD 1312
>gi|218505789 protocadherin 15 isoform CD2-2 precursor [Homo sapiens]
Length = 1539
Score = 30.0 bits (66), Expect = 0.42
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 23 QLDYALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPSVNQIMKIARDKEVG-----KDY 77
QLD + ++ ++PP +EKK+ +L +++ ++ +P +++ + G +DY
Sbjct: 1245 QLDMQV-IVSNVPPTLVEKKIEDLTEILDRYVQEQIPGAKVVVESIGARRHGDAFSLEDY 1303
Query: 78 LLCD 81
CD
Sbjct: 1304 TKCD 1307
>gi|218505787 protocadherin 15 isoform CD2-1 precursor [Homo sapiens]
Length = 1790
Score = 30.0 bits (66), Expect = 0.42
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 23 QLDYALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPSVNQIMKIARDKEVG-----KDY 77
QLD + ++ ++PP +EKK+ +L +++ ++ +P +++ + G +DY
Sbjct: 1257 QLDMQV-IVSNVPPTLVEKKIEDLTEILDRYVQEQIPGAKVVVESIGARRHGDAFSLEDY 1315
Query: 78 LLCD 81
CD
Sbjct: 1316 TKCD 1319
>gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapiens]
Length = 1935
Score = 30.0 bits (66), Expect = 0.42
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 23 QLDYALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPSVNQIMKIARDKEVG-----KDY 77
QLD + ++ ++PP +EKK+ +L +++ ++ +P +++ + G +DY
Sbjct: 1223 QLDMQV-IVSNVPPTLVEKKIEDLTEILDRYVQEQIPGAKVVVESIGARRHGDAFSLEDY 1281
Query: 78 LLCD 81
CD
Sbjct: 1282 TKCD 1285
>gi|218505783 protocadherin 15 isoform CD1-8 precursor [Homo sapiens]
Length = 1915
Score = 30.0 bits (66), Expect = 0.42
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 23 QLDYALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPSVNQIMKIARDKEVG-----KDY 77
QLD + ++ ++PP +EKK+ +L +++ ++ +P +++ + G +DY
Sbjct: 1208 QLDMQV-IVSNVPPTLVEKKIEDLTEILDRYVQEQIPGAKVVVESIGARRHGDAFSLEDY 1266
Query: 78 LLCD 81
CD
Sbjct: 1267 TKCD 1270
>gi|218505781 protocadherin 15 isoform CD1-7 precursor [Homo sapiens]
Length = 1952
Score = 30.0 bits (66), Expect = 0.42
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 23 QLDYALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPSVNQIMKIARDKEVG-----KDY 77
QLD + ++ ++PP +EKK+ +L +++ ++ +P +++ + G +DY
Sbjct: 1245 QLDMQV-IVSNVPPTLVEKKIEDLTEILDRYVQEQIPGAKVVVESIGARRHGDAFSLEDY 1303
Query: 78 LLCD 81
CD
Sbjct: 1304 TKCD 1307
>gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapiens]
Length = 1886
Score = 30.0 bits (66), Expect = 0.42
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 23 QLDYALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPSVNQIMKIARDKEVG-----KDY 77
QLD + ++ ++PP +EKK+ +L +++ ++ +P +++ + G +DY
Sbjct: 1174 QLDMQV-IVSNVPPTLVEKKIEDLTEILDRYVQEQIPGAKVVVESIGARRHGDAFSLEDY 1232
Query: 78 LLCD 81
CD
Sbjct: 1233 TKCD 1236
>gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapiens]
Length = 1957
Score = 30.0 bits (66), Expect = 0.42
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 23 QLDYALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPSVNQIMKIARDKEVG-----KDY 77
QLD + ++ ++PP +EKK+ +L +++ ++ +P +++ + G +DY
Sbjct: 1245 QLDMQV-IVSNVPPTLVEKKIEDLTEILDRYVQEQIPGAKVVVESIGARRHGDAFSLEDY 1303
Query: 78 LLCD 81
CD
Sbjct: 1304 TKCD 1307
>gi|218505775 protocadherin 15 isoform CD1-1 precursor [Homo sapiens]
Length = 1962
Score = 30.0 bits (66), Expect = 0.42
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 23 QLDYALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPSVNQIMKIARDKEVG-----KDY 77
QLD + ++ ++PP +EKK+ +L +++ ++ +P +++ + G +DY
Sbjct: 1250 QLDMQV-IVSNVPPTLVEKKIEDLTEILDRYVQEQIPGAKVVVESIGARRHGDAFSLEDY 1308
Query: 78 LLCD 81
CD
Sbjct: 1309 TKCD 1312
>gi|54234040 vacuolar protein sorting 54 isoform 2 [Homo sapiens]
Length = 965
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 14 AASATMSDQQLDYALDLMRHLPPQQIEKKLSNLIDLIP--HLCEDLLPSVNQIMKIARDK 71
AAS+ + ++L + LD++ QI + + H +D L +Q +K+ RDK
Sbjct: 187 AASSKLLQEKLSHYLDIVEVNIAHQISLRSEAFFHAMTSQHELQDYLRKTSQAVKMLRDK 246
Query: 72 EVGKDYLLCD 81
D ++C+
Sbjct: 247 IAQIDKVMCE 256
>gi|54234034 vacuolar protein sorting 54 isoform 1 [Homo sapiens]
Length = 977
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 14 AASATMSDQQLDYALDLMRHLPPQQIEKKLSNLIDLIP--HLCEDLLPSVNQIMKIARDK 71
AAS+ + ++L + LD++ QI + + H +D L +Q +K+ RDK
Sbjct: 199 AASSKLLQEKLSHYLDIVEVNIAHQISLRSEAFFHAMTSQHELQDYLRKTSQAVKMLRDK 258
Query: 72 EVGKDYLLCD 81
D ++C+
Sbjct: 259 IAQIDKVMCE 268
>gi|40254834 kinesin family member 1C [Homo sapiens]
Length = 1103
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 49 LIPHLCEDLLPSV--NQIMKIARDKEVGKDYLLCDCNRDGDCYRSRGLL 95
++P LCEDL V NQ +++ EV + C+ RD +SRG L
Sbjct: 118 IVPQLCEDLFSRVSENQSAQLSYSVEVSYMEIYCERVRDLLNPKSRGSL 166
>gi|59823631 G protein-coupled receptor 125 [Homo sapiens]
Length = 1321
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 39 IEKKLSNLIDLIPHLCEDLLPSVNQ----IMKIARDKEVGKDYLLCDCN 83
I + L+NL+ L +L +L S++Q + R E +YLLCDCN
Sbjct: 148 IFRGLTNLVRL--NLSGNLFSSLSQGTFDYLASLRSLEFQTEYLLCDCN 194
>gi|68348709 formin binding protein 1-like isoform 1 [Homo sapiens]
Length = 551
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 27 ALDLMRHLPPQQIEKKLSNLID 48
AL+ HLPP+Q KKL ID
Sbjct: 333 ALEDFSHLPPEQRRKKLQQRID 354
>gi|41581463 formin binding protein 1-like isoform 2 [Homo sapiens]
Length = 547
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 27 ALDLMRHLPPQQIEKKLSNLID 48
AL+ HLPP+Q KKL ID
Sbjct: 333 ALEDFSHLPPEQRRKKLQQRID 354
>gi|224282178 GDNF family receptor alpha 1 isoform b preproprotein
[Homo sapiens]
Length = 460
Score = 26.2 bits (56), Expect = 6.0
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 13/65 (20%)
Query: 29 DLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPSVNQIMKIARDKEVGKDYLLCDCNRDGDC 88
DL+ P + + +LS++ ++P + + +P N + A+ CN D C
Sbjct: 114 DLLEDSPYEPVNSRLSDIFRVVPFISVEHIPKGNNCLDAAK-----------ACNLDDIC 162
Query: 89 --YRS 91
YRS
Sbjct: 163 KKYRS 167
>gi|22035692 GDNF family receptor alpha 1 isoform b preproprotein
[Homo sapiens]
Length = 460
Score = 26.2 bits (56), Expect = 6.0
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 13/65 (20%)
Query: 29 DLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPSVNQIMKIARDKEVGKDYLLCDCNRDGDC 88
DL+ P + + +LS++ ++P + + +P N + A+ CN D C
Sbjct: 114 DLLEDSPYEPVNSRLSDIFRVVPFISVEHIPKGNNCLDAAK-----------ACNLDDIC 162
Query: 89 --YRS 91
YRS
Sbjct: 163 KKYRS 167
>gi|4758502 hyaluronan binding protein 2 preproprotein [Homo
sapiens]
Length = 560
Score = 26.2 bits (56), Expect = 6.0
Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 16/88 (18%)
Query: 2 GWKITDTRMGTAAASATMSDQQLDYALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLLPSV 61
GW +T+T G S Q LD + L I L N L H+ +D +
Sbjct: 451 GWGVTETGKG--------SRQLLDAKVKL--------IANTLCNSRQLYDHMIDDSMICA 494
Query: 62 NQIMKIARDKEVGKDYLLCDCNRDGDCY 89
+ K +D G C +DG Y
Sbjct: 495 GNLQKPGQDTCQGDSGGPLTCEKDGTYY 522
>gi|21359945 chromosome condensation protein G [Homo sapiens]
Length = 1015
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 35 PPQQIEKKLSNLIDLIPHLCEDLLPSVNQIMKIARDK 71
P ++ K + ++L HL +DLL +N+I++ +D+
Sbjct: 845 PEIRVYTKALSSLELSSHLAKDLLVLLNEILEQVKDR 881
>gi|143770880 laminin, beta 4 [Homo sapiens]
Length = 1761
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 30 LMRHLPPQQIEKKLSNLIDLIPHLCEDLLPSVNQIMKIARDKEVGKDY 77
L ++PP+ IEK + ++D+ HL ++++KI + ++ +DY
Sbjct: 1490 LEENVPPEDIEKVANGVLDI--HLPIPSQNLTDELVKIQKHMQLCEDY 1535
>gi|19924175 axonal transport of synaptic vesicles [Homo sapiens]
Length = 1690
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 49 LIPHLCEDLLPSVNQIMKIARDKEVGKDYLLCDCNRDGD 87
+IP LCEDL +N V Y+ C R D
Sbjct: 118 IIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRD 156
>gi|8922911 radical S-adenosyl methionine domain containing 1 [Homo
sapiens]
Length = 442
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 27 ALDLMRHLPPQQIEKKLSNLIDLIPHLCEDLL 58
++DLM LP QQ+ L L +L+ H C+D L
Sbjct: 193 SVDLMLGLPAQQVGPWLGQLQELLHH-CDDHL 223
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,608,365
Number of Sequences: 37866
Number of extensions: 136074
Number of successful extensions: 378
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 30
length of query: 95
length of database: 18,247,518
effective HSP length: 66
effective length of query: 29
effective length of database: 15,748,362
effective search space: 456702498
effective search space used: 456702498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.