Guide to the Human Genome
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Name: KIF1A Sequence: fasta or formatted (1690aa) NCBI GI: 19924175
Description:

axonal transport of synaptic vesicles

Referenced in:

Kinesins
Synapses

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9        117           2
 C cysteine            1.7         28           1
 D aspartate           5.3         90           2
 E glutamate           8.8        148           5
 F phenylalanine       3.3         56           1
 G glycine             5.1         87           2
 H histidine           2.3         39           1
 I isoleucine          4.1         70           2
 K lysine              4.9         82           5
 L leucine             9.6        162           3
 M methionine          2.3         39           2
 N asparagine          3.7         63           3
 P proline             5.7         96           2
 Q glutamine           3.8         65           2
 R arginine            7.5        127           5
 S serine              8.5        143           3
 T threonine           5.6         95           3
 V valine              6.5        110           3
 W tryptophan          1.0         17           1
 Y tyrosine            3.3         56           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   axonal transport of synaptic vesicles 
KIF1B                 0.402   kinesin family member 1B isoform b 
KIF1B                 0.318   kinesin family member 1B isoform alpha 
KIF1C                 0.287   kinesin family member 1C 
KIF13A                0.178   kinesin family member 13A isoform d 
KIF13A                0.178   kinesin family member 13A isoform c 
KIF13A                0.178   kinesin family member 13A isoform b 
KIF13A                0.178   kinesin family member 13A isoform a 
KIF13B                0.173   kinesin family member 13B 
KIF16B                0.153   kinesin-like motor protein C20orf23 
KIF14                 0.135   kinesin family member 14 
STARD9                0.093   PREDICTED: StAR-related lipid transfer (START) doma...
STARD9                0.093   PREDICTED: StAR-related lipid transfer (START) doma...
STARD9                0.093   PREDICTED: StAR-related lipid transfer (START) doma...
KIF17                 0.082   kinesin family member 17 isoform b 
KIF17                 0.082   kinesin family member 17 isoform a 
KIF3B                 0.076   kinesin family member 3B 
KIF3A                 0.076   kinesin family member 3A 
KIF4B                 0.075   kinesin family member 4B 
KIF4A                 0.073   kinesin family member 4 
KIF3C                 0.070   kinesin family member 3C 
KIF15                 0.068   kinesin family member 15 
KIF5B                 0.067   kinesin family member 5B 
KIF5C                 0.063   kinesin family member 5C 
KIF18B                0.063   kinesin family member 18B 
KIF21A                0.063   kinesin family member 21A 
KIF5A                 0.062   kinesin family member 5A 
KIF18A                0.062   kinesin family member 18A 
KIF27                 0.062   kinesin family member 27 
KIF19                 0.061   kinesin family member 19 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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