Guide to the Human Genome
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Name: FNBP1L Sequence: fasta or formatted (551aa) NCBI GI: 68348709
Description:

formin binding protein 1-like isoform 1

Referenced in:

Cytoskeleton

Other entries for this name:
alt prot [547aa] formin binding protein 1-like isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         32           2
 C cysteine            1.3          7           1
 D aspartate           7.6         42           3
 E glutamate          10.3         57           2
 F phenylalanine       3.4         19           2
 G glycine             6.4         35           2
 H histidine           3.1         17           2
 I isoleucine          4.4         24           2
 K lysine              9.3         51           3
 L leucine             6.5         36           1
 M methionine          2.9         16           1
 N asparagine          4.5         25           2
 P proline             3.8         21           2
 Q glutamine           6.2         34           2
 R arginine            6.4         35           2
 S serine              5.3         29           2
 T threonine           3.8         21           2
 V valine              4.0         22           2
 W tryptophan          1.3          7           1
 Y tyrosine            3.8         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   formin binding protein 1-like isoform 1 
FNBP1L                0.992   formin binding protein 1-like isoform 2 
FNBP1                 0.526   formin binding protein 1 
TRIP10                0.518   thyroid hormone receptor interactor 10 
FCHSD2                0.050   FCH and double SH3 domains 2 
SRGAP2                0.030   SLIT-ROBO Rho GTPase activating protein 2 isoform a...
SRGAP2                0.030   SLIT-ROBO Rho GTPase activating protein 2 isoform b...
PSTPIP1               0.029   proline-serine-threonine phosphatase interacting pro...
FCHSD1                0.028   FCH and double SH3 domains 1 
FER                   0.026   fer (fps/fes related) tyrosine kinase 
SRGAP1                0.023   SLIT-ROBO Rho GTPase activating protein 1 
NPHP1                 0.023   nephrocystin 1 isoform 3 
NPHP1                 0.023   nephrocystin 1 isoform 2 
NPHP1                 0.023   nephrocystin 1 isoform 1 
PACSIN1               0.023   protein kinase C and casein kinase substrate in neur...
SRGAP3                0.023   SLIT-ROBO Rho GTPase activating protein 3 isoform b ...
SRGAP3                0.023   SLIT-ROBO Rho GTPase activating protein 3 isoform a ...
PACSIN2               0.023   protein kinase C and casein kinase substrate in neu...
ITSN2                 0.023   intersectin 2 isoform 3 
CD2AP                 0.020   CD2-associated protein 
NPHP1                 0.019   nephrocystin 1 isoform 4 
PSTPIP2               0.018   proline-serine-threonine phosphatase interacting pr...
TPR                   0.018   nuclear pore complex-associated protein TPR 
ARHGAP4               0.018   Rho GTPase activating protein 4 
SNX9                  0.018   sorting nexin 9 
SRC                   0.018   proto-oncogene tyrosine-protein kinase SRC 
SRC                   0.018   proto-oncogene tyrosine-protein kinase SRC 
MYO1E                 0.018   myosin IE 
BTK                   0.017   Bruton agammaglobulinemia tyrosine kinase 
NCK1                  0.017   NCK adaptor protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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