Guide to the Human Genome
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Name: VPS54 Sequence: fasta or formatted (977aa) NCBI GI: 54234034
Description:

vacuolar protein sorting 54 isoform 1

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [965aa] vacuolar protein sorting 54 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         57           2
 C cysteine            1.8         18           1
 D aspartate           6.3         62           2
 E glutamate           6.7         65           3
 F phenylalanine       4.2         41           2
 G glycine             3.4         33           2
 H histidine           3.4         33           1
 I isoleucine          6.1         60           2
 K lysine              7.2         70           2
 L leucine            12.0        117           3
 M methionine          2.5         24           2
 N asparagine          3.7         36           2
 P proline             3.8         37           2
 Q glutamine           5.3         52           2
 R arginine            4.2         41           1
 S serine              8.8         86           4
 T threonine           5.6         55           2
 V valine              6.6         64           3
 W tryptophan          0.6          6           1
 Y tyrosine            2.0         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vacuolar protein sorting 54 isoform 1 
VPS54                 0.983   vacuolar protein sorting 54 isoform 2 
CCDC132               0.010   coiled-coil domain containing 132 isoform a 
PMFBP1                0.008   polyamine modulated factor 1 binding protein 1 isof...
PTPN3                 0.007   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.007   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.007   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.006   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.006   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.006   protein tyrosine phosphatase, non-receptor type 3 i...
LOC100130716          0.005   PREDICTED: similar to mucin 11 
LOC100130716          0.005   PREDICTED: similar to Mucin-12 
MUC12                 0.005   PREDICTED: mucin 12 
MUC12                 0.005   PREDICTED: mucin 12 
LOC100133714          0.005   PREDICTED: similar to Mucin-12, partial 
NEDD1                 0.005   neural precursor cell expressed, developmentally do...
NEDD1                 0.005   neural precursor cell expressed, developmentally do...
NEDD1                 0.005   neural precursor cell expressed, developmentally dow...
NEDD1                 0.005   neural precursor cell expressed, developmentally do...
MUC17                 0.005   mucin 17 
FAM21A                0.005   hypothetical protein LOC387680 
KIF27                 0.004   kinesin family member 27 
HIP1R                 0.004   huntingtin interacting protein-1-related 
SERPING1              0.004   serpin peptidase inhibitor, clade G, member 1 precur...
SERPING1              0.004   serpin peptidase inhibitor, clade G, member 1 precur...
LOC100294412          0.004   PREDICTED: similar to KIAA0655 protein 
FAM21B                0.004   hypothetical protein LOC55747 
PMFBP1                0.004   polyamine modulated factor 1 binding protein 1 isof...
GRIPAP1               0.004   GRIP1 associated protein 1 isoform 1 
MUC12                 0.004   PREDICTED: mucin 12, cell surface associated 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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