Guide to the Human Genome
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Name: LOC644265 Sequence: fasta or formatted (95aa) NCBI GI: 239753255
Description:

PREDICTED: similar to hCG1793552

Not currently referenced in the text

Other entries for this name:
alt mRNA {95aa} PREDICTED: similar to hCG1793552
alt mRNA {95aa} PREDICTED: similar to F-actin capping protein beta subunit
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3          6           3
 C cysteine            4.2          4           1
 D aspartate          11.6         11           1
 E glutamate           3.2          3           1
 F phenylalanine       0.0          0           0
 G glycine             5.3          5           1
 H histidine           2.1          2           1
 I isoleucine          6.3          6           1
 K lysine              6.3          6           2
 L leucine            14.7         14           2
 M methionine          5.3          5           1
 N asparagine          3.2          3           1
 P proline             4.2          4           2
 Q glutamine           5.3          5           2
 R arginine            6.3          6           1
 S serine              5.3          5           1
 T threonine           4.2          4           1
 V valine              2.1          2           1
 W tryptophan          1.1          1           1
 Y tyrosine            3.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1793552 
LOC644265             1.000   PREDICTED: similar to F-actin capping protein beta ...
LOC644265             1.000   PREDICTED: similar to hCG1793552 
CAPZB                 0.555   F-actin capping protein beta subunit 
PCDH15                0.029   protocadherin 15 isoform CD1-4 precursor 
PCDH15                0.029   protocadherin 15 isoform CD1-10 precursor 
PCDH15                0.029   protocadherin 15 isoform CD3-2 precursor 
PCDH15                0.029   protocadherin 15 isoform CD3-1 precursor 
PCDH15                0.029   protocadherin 15 isoform CD2-2 precursor 
PCDH15                0.029   protocadherin 15 isoform CD2-1 precursor 
PCDH15                0.029   protocadherin 15 isoform CD1-9 precursor 
PCDH15                0.029   protocadherin 15 isoform CD1-8 precursor 
PCDH15                0.029   protocadherin 15 isoform CD1-7 precursor 
PCDH15                0.029   protocadherin 15 isoform CD1-6 precursor 
PCDH15                0.029   protocadherin 15 isoform CD1-2 precursor 
PCDH15                0.029   protocadherin 15 isoform CD1-1 precursor 
VPS54                 0.017   vacuolar protein sorting 54 isoform 2 
VPS54                 0.017   vacuolar protein sorting 54 isoform 1 
KIF1C                 0.017   kinesin family member 1C 
GPR125                0.012   G protein-coupled receptor 125 
FNBP1L                0.012   formin binding protein 1-like isoform 1 
FNBP1L                0.012   formin binding protein 1-like isoform 2 
GFRA1                 0.006   GDNF family receptor alpha 1 isoform b preproprotei...
GFRA1                 0.006   GDNF family receptor alpha 1 isoform b preproprotein...
HABP2                 0.006   hyaluronan binding protein 2 preproprotein 
NCAPG                 0.006   chromosome condensation protein G 
LAMB4                 0.006   laminin, beta 4 
KIF1A                 0.006   axonal transport of synaptic vesicles 
RSAD1                 0.006   radical S-adenosyl methionine domain containing 1 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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